Wall clock time and date at job start Fri Apr 10 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 119.99832 * 2 1 4 4 N 1.34770 * 120.00107 * 180.02562 * 2 1 3 5 5 C 1.46931 * 120.63324 * 175.36142 * 4 2 1 6 6 C 1.53188 * 108.77529 * 126.41248 * 5 4 2 7 7 C 1.53043 * 109.33731 * 54.62282 * 6 5 4 8 8 C 1.53041 * 109.53614 * 298.67906 * 7 6 5 9 9 H 1.08999 * 109.49590 * 301.34861 * 8 7 6 10 10 C 1.50700 * 109.49190 * 181.28691 * 8 7 6 11 11 O 1.21282 * 120.00450 * 345.71901 * 10 8 7 12 12 N 1.34779 * 120.00013 * 165.72747 * 10 8 7 13 13 C 1.46495 * 120.00503 * 184.68667 * 12 10 8 14 14 C 1.50698 * 109.46836 * 269.99772 * 13 12 10 15 15 H 1.07997 * 120.00292 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00147 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00051 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99851 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46713 * 270.00048 * 18 16 14 20 20 H 1.48497 * 109.47079 * 29.99721 * 18 16 14 21 21 H 1.48499 * 109.46887 * 150.00168 * 18 16 14 22 22 C 1.46501 * 119.99690 * 4.67587 * 12 10 8 23 23 C 1.52995 * 109.47533 * 267.69363 * 22 12 10 24 24 C 1.53000 * 109.47146 * 174.99778 * 23 22 12 25 25 C 1.53002 * 109.47244 * 295.00228 * 23 22 12 26 26 C 1.46924 * 120.63005 * 355.38443 * 4 2 1 27 27 H 1.09001 * 109.47180 * 273.93934 * 1 2 3 28 28 H 1.09006 * 109.47364 * 33.93523 * 1 2 3 29 29 H 1.08996 * 109.47388 * 153.93986 * 1 2 3 30 30 H 1.08998 * 109.58431 * 246.20353 * 5 4 2 31 31 H 1.09000 * 109.58355 * 6.48415 * 5 4 2 32 32 H 1.09001 * 109.49657 * 174.58633 * 6 5 4 33 33 H 1.08995 * 109.49937 * 294.65426 * 6 5 4 34 34 H 1.09004 * 109.48198 * 178.64812 * 7 6 5 35 35 H 1.09004 * 109.43478 * 58.68894 * 7 6 5 36 36 H 1.08996 * 109.47469 * 149.99478 * 13 12 10 37 37 H 1.09005 * 109.47138 * 29.99139 * 13 12 10 38 38 H 0.97003 * 119.99953 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46895 * 27.69852 * 22 12 10 40 40 H 1.09007 * 109.47096 * 147.68971 * 22 12 10 41 41 H 1.09002 * 109.46820 * 55.00001 * 23 22 12 42 42 H 1.09002 * 109.47079 * 60.00382 * 24 23 22 43 43 H 1.09004 * 109.47136 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47405 * 300.00320 * 24 23 22 45 45 H 1.08994 * 109.46980 * 179.97438 * 25 23 22 46 46 H 1.09002 * 109.47027 * 299.99647 * 25 23 22 47 47 H 1.08998 * 109.46962 * 59.99439 * 25 23 22 48 48 H 1.09007 * 109.58512 * 113.80089 * 26 4 2 49 49 H 1.09001 * 109.70680 * 353.44881 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6465 -1.1854 -0.1028 6 6 4.2118 -2.0050 1.0614 7 6 3.5648 -3.3919 1.0660 8 6 2.0536 -3.2511 1.2625 9 1 1.8555 -2.7339 2.2014 10 6 1.4216 -4.6186 1.2985 11 8 2.0496 -5.5870 0.9260 12 7 0.1582 -4.7656 1.7444 13 6 -0.4209 -6.1048 1.8765 14 6 -1.0996 -6.4878 0.5867 15 1 -1.1000 -5.8022 -0.2478 16 6 -1.7203 -7.7137 0.4718 17 7 -2.3130 -8.0478 -0.6536 18 14 -1.7191 -8.8999 1.9148 19 1 -0.5229 -9.7763 1.8341 20 1 -1.6860 -8.1330 3.1860 21 1 -2.9473 -9.7335 1.8712 22 6 -0.6358 -3.5861 2.0974 23 6 -0.4699 -3.2871 3.5886 24 6 -1.1974 -1.9857 3.9319 25 6 -1.0636 -4.4348 4.4081 26 6 1.4638 -2.4455 0.1006 27 1 -0.3633 0.0706 1.0252 28 1 -0.3634 0.8527 -0.5737 29 1 -0.3634 -0.9231 -0.4514 30 1 3.9411 -1.6415 -1.0479 31 1 4.0288 -0.1658 -0.0542 32 1 5.2906 -2.1072 0.9442 33 1 3.9943 -1.4990 2.0020 34 1 3.9830 -3.9855 1.8790 35 1 3.7628 -3.8876 0.1156 36 1 -1.1510 -6.1068 2.6858 37 1 0.3693 -6.8221 2.0981 38 1 -2.7493 -8.9104 -0.7345 39 1 -0.2940 -2.7305 1.5150 40 1 -1.6867 -3.7772 1.8798 41 1 0.5897 -3.1837 3.8227 42 1 -2.2570 -2.0891 3.6978 43 1 -1.0788 -1.7724 4.9943 44 1 -0.7745 -1.1681 3.3481 45 1 -0.9449 -4.2219 5.4704 46 1 -2.1231 -4.5382 4.1740 47 1 -0.5453 -5.3619 4.1635 48 1 1.5806 -3.0045 -0.8279 49 1 0.4056 -2.2599 0.2847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701318301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:36 Heat of formation + Delta-G solvation = -99.336395 kcal Electronic energy + Delta-G solvation = -28094.811989 eV Core-core repulsion = 24441.761992 eV Total energy + Delta-G solvation = -3653.049997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78420 -40.56357 -38.25484 -37.78514 -35.31109 -34.22272 -34.09312 -32.92209 -30.51132 -29.97944 -27.96903 -27.06236 -26.24757 -25.54103 -23.78569 -22.16583 -21.35606 -20.09046 -19.81322 -19.09307 -18.19948 -17.89926 -17.25600 -17.05807 -16.51432 -16.26367 -15.86042 -15.71726 -15.26176 -14.99801 -14.80980 -14.53874 -14.43254 -14.27229 -14.20897 -13.92880 -13.66046 -13.57478 -13.13048 -13.01135 -12.94766 -12.90652 -12.67049 -12.58193 -12.47491 -12.21100 -12.00969 -11.96426 -11.86569 -11.74581 -11.72269 -11.50810 -11.43600 -10.86283 -10.78646 -10.62323 -9.76715 -9.34457 -8.30862 -6.33966 1.32723 1.36438 1.43887 1.50961 1.69023 1.99483 2.30287 2.32328 3.04107 3.42083 3.49381 3.72567 3.76486 3.91819 3.98052 4.03112 4.12794 4.16443 4.23423 4.35085 4.42340 4.49354 4.58195 4.65522 4.68761 4.75001 4.77555 4.83828 4.86182 4.92954 4.94111 4.98067 4.98924 5.05503 5.09145 5.12380 5.15235 5.31299 5.34709 5.42787 5.46595 5.47352 5.56097 5.70622 6.27298 6.31380 6.67216 6.71095 7.08927 7.25182 7.41981 8.85818 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.004592 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.358665 B = 6096.701430 C = 6597.059992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.590 6.590 4 N -0.607 5.607 5 C 0.103 3.897 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.108 4.108 9 H 0.119 0.881 10 C 0.506 3.494 11 O -0.586 6.586 12 N -0.591 5.591 13 C 0.223 3.777 14 C -0.528 4.528 15 H 0.034 0.966 16 C 0.014 3.986 17 N -0.945 5.945 18 Si 0.937 3.063 19 H -0.279 1.279 20 H -0.237 1.237 21 H -0.277 1.277 22 C 0.100 3.900 23 C -0.108 4.108 24 C -0.139 4.139 25 C -0.154 4.154 26 C 0.116 3.884 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 16.340 9.333 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.304 3.696 3 O -0.471 6.471 4 N -0.339 5.339 5 C -0.019 4.019 6 C -0.156 4.156 7 C -0.137 4.137 8 C -0.130 4.130 9 H 0.137 0.863 10 C 0.294 3.706 11 O -0.466 6.466 12 N -0.321 5.321 13 C 0.101 3.899 14 C -0.567 4.567 15 H 0.052 0.948 16 C -0.184 4.184 17 N -0.585 5.585 18 Si 0.761 3.239 19 H -0.205 1.205 20 H -0.160 1.160 21 H -0.203 1.203 22 C -0.022 4.022 23 C -0.128 4.128 24 C -0.197 4.197 25 C -0.212 4.212 26 C -0.007 4.007 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.889 16.252 9.057 19.515 hybrid contribution -0.168 -1.474 -0.142 1.490 sum 5.721 14.778 8.915 18.183 Atomic orbital electron populations 1.22104 0.89008 1.05899 1.06844 1.21415 0.92014 0.82150 0.74023 1.90677 1.71827 1.32143 1.52414 1.48200 1.07749 1.05644 1.72336 1.21740 0.79055 1.01971 0.99169 1.21841 1.01252 0.93823 0.98722 1.21331 0.91911 0.97715 1.02768 1.21672 0.97513 0.91939 1.01899 0.86334 1.21002 0.81603 0.91323 0.76690 1.90658 1.63753 1.43300 1.48925 1.47952 1.12689 1.08071 1.63347 1.19456 0.93197 0.81287 0.95974 1.21571 1.33793 1.02093 0.99215 0.94811 1.25749 0.94509 0.99613 0.98568 1.70039 1.37806 1.22967 1.27723 0.85867 0.77729 0.79417 0.80903 1.20537 1.16004 1.20265 1.22135 0.96799 0.87093 0.96191 1.21549 1.00802 0.96562 0.93848 1.21759 1.00575 0.95091 1.02290 1.21988 1.00850 0.98075 1.00238 1.21836 0.97633 0.83677 0.97529 0.86235 0.88009 0.88907 0.91004 0.89230 0.88411 0.90780 0.91516 0.92411 0.92469 0.97081 0.92463 0.88370 0.90458 0.90993 0.92055 0.91588 0.91102 0.91396 0.92663 0.94407 0.91769 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 9.47 71.24 0.67 -1.94 16 2 C 0.51 11.47 7.80 87.66 0.68 12.16 16 3 O -0.59 -17.60 16.51 -3.04 -0.05 -17.65 16 4 N -0.61 -12.95 2.97 -818.92 -2.43 -15.39 16 5 C 0.10 2.06 6.44 86.36 0.56 2.62 16 6 C -0.12 -2.11 6.08 30.67 0.19 -1.92 16 7 C -0.10 -2.39 4.54 30.62 0.14 -2.25 16 8 C -0.11 -2.73 1.85 -11.46 -0.02 -2.75 16 9 H 0.12 2.44 6.58 -2.39 -0.02 2.42 16 10 C 0.51 18.69 6.91 87.66 0.61 19.29 16 11 O -0.59 -27.87 15.65 -3.04 -0.05 -27.92 16 12 N -0.59 -21.63 2.32 -826.16 -1.92 -23.55 16 13 C 0.22 10.22 3.28 85.63 0.28 10.50 16 14 C -0.53 -29.67 9.94 25.60 0.25 -29.42 16 15 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 16 C 0.01 0.78 5.47 84.66 0.46 1.24 16 17 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 18 Si 0.94 43.39 27.47 68.60 1.88 45.27 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 C 0.10 2.57 4.55 86.38 0.39 2.96 16 23 C -0.11 -2.21 3.00 -10.79 -0.03 -2.24 16 24 C -0.14 -1.96 9.19 71.98 0.66 -1.30 16 25 C -0.15 -3.68 8.14 71.98 0.59 -3.10 16 26 C 0.12 2.64 5.14 86.36 0.44 3.09 16 27 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.09 1.22 6.19 -2.39 -0.01 1.21 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.91 7.00 -2.39 -0.02 1.89 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.61 7.99 -2.39 -0.02 1.60 16 36 H 0.06 2.42 4.77 -2.39 -0.01 2.41 16 37 H 0.01 0.56 6.92 -2.38 -0.02 0.54 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.10 1.95 4.05 -2.39 -0.01 1.94 16 40 H 0.08 2.18 8.09 -2.38 -0.02 2.16 16 41 H 0.07 1.44 7.14 -2.39 -0.02 1.42 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 46 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 47 H 0.04 1.11 5.71 -2.39 -0.01 1.09 16 48 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 49 H 0.12 2.23 2.89 -2.39 -0.01 2.22 16 Total: -1.00 -77.62 372.83 4.49 -73.13 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.88 Total: 17.32 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 5.88 Total: 6.93 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -4.05 Total: -97.08 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.10 Total: -45.57 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -77.62 4.49 -73.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.203 kcal (2) G-P(sol) polarization free energy of solvation -77.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds