Wall clock time and date at job start Fri Apr 10 2020 22:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 119.99503 * 2 1 4 4 N 1.34773 * 119.99832 * 180.02562 * 2 1 3 5 5 C 1.46930 * 120.63359 * 359.97438 * 4 2 1 6 6 C 1.53188 * 108.77432 * 233.58671 * 5 4 2 7 7 C 1.53043 * 109.31360 * 305.36214 * 6 5 4 8 8 C 1.53039 * 109.53449 * 61.37012 * 7 6 5 9 9 H 1.08989 * 109.50400 * 58.58793 * 8 7 6 10 10 C 1.50701 * 109.49496 * 178.68661 * 8 7 6 11 11 O 1.21282 * 120.00374 * 16.00660 * 10 8 7 12 12 N 1.34780 * 119.99856 * 196.01370 * 10 8 7 13 13 C 1.46501 * 119.99973 * 182.65876 * 12 10 8 14 14 C 1.50704 * 109.46916 * 90.00063 * 13 12 10 15 15 H 1.07993 * 119.99772 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99698 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99986 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00344 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46846 * 90.00368 * 18 16 14 20 20 H 1.48500 * 109.47561 * 210.00289 * 18 16 14 21 21 H 1.48493 * 109.47414 * 330.00615 * 18 16 14 22 22 C 1.46502 * 119.99977 * 2.66395 * 12 10 8 23 23 C 1.52999 * 109.47226 * 83.22707 * 22 12 10 24 24 C 1.53000 * 109.47287 * 64.99931 * 23 22 12 25 25 C 1.52997 * 109.46853 * 185.00049 * 23 22 12 26 26 C 1.46930 * 120.62744 * 179.71698 * 4 2 1 27 27 H 1.09004 * 109.46681 * 239.99766 * 1 2 3 28 28 H 1.08998 * 109.47198 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47420 * 119.99886 * 1 2 3 30 30 H 1.08998 * 109.58459 * 353.37313 * 5 4 2 31 31 H 1.08994 * 109.58661 * 113.65432 * 5 4 2 32 32 H 1.08995 * 109.49679 * 65.31674 * 6 5 4 33 33 H 1.09000 * 109.49875 * 185.38096 * 6 5 4 34 34 H 1.09006 * 109.45902 * 181.38594 * 7 6 5 35 35 H 1.08999 * 109.46180 * 301.34589 * 7 6 5 36 36 H 1.08997 * 109.47121 * 210.00021 * 13 12 10 37 37 H 1.09004 * 109.47377 * 330.00243 * 13 12 10 38 38 H 0.96988 * 119.99866 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46597 * 203.22805 * 22 12 10 40 40 H 1.09001 * 109.46653 * 323.22410 * 22 12 10 41 41 H 1.09000 * 109.46891 * 305.00123 * 23 22 12 42 42 H 1.09005 * 109.46658 * 59.99625 * 24 23 22 43 43 H 1.09000 * 109.47584 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.46844 * 300.00166 * 24 23 22 45 45 H 1.08993 * 109.47176 * 59.99985 * 25 23 22 46 46 H 1.09000 * 109.46792 * 180.02562 * 25 23 22 47 47 H 1.09004 * 109.47081 * 299.99407 * 25 23 22 48 48 H 1.09001 * 109.58600 * 246.19775 * 26 4 2 49 49 H 1.08996 * 109.58829 * 6.62832 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4603 -2.4477 -0.0005 6 6 1.9693 -3.2998 1.1663 7 6 3.4906 -3.4348 1.0687 8 6 4.1344 -2.0497 1.1653 9 1 3.8512 -1.5818 2.1080 10 6 5.6339 -2.1866 1.1014 11 8 6.1323 -3.2186 0.7046 12 7 6.4210 -1.1621 1.4855 13 6 7.8771 -1.2735 1.3688 14 6 8.3125 -0.7706 0.0165 15 1 7.5781 -0.4043 -0.6855 16 6 9.6484 -0.7781 -0.3244 17 7 10.0285 -0.3388 -1.5044 18 14 10.9187 -1.4110 0.8901 19 1 11.1142 -2.8690 0.6871 20 1 12.2065 -0.7040 0.6730 21 1 10.4455 -1.1632 2.2756 22 6 5.8204 0.0627 2.0198 23 6 5.5209 -0.1236 3.5086 24 6 6.8335 -0.2985 4.2750 25 6 4.7813 1.1068 4.0378 26 6 3.6501 -1.1833 -0.0068 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 0.3922 -2.2658 0.1184 31 1 1.6398 -2.9679 -0.9413 32 1 1.7063 -2.8200 2.1090 33 1 1.5123 -4.2884 1.1213 34 1 3.8527 -4.0612 1.8840 35 1 3.7542 -3.8921 0.1150 36 1 8.3507 -0.6766 2.1481 37 1 8.1719 -2.3169 1.4805 38 1 10.9683 -0.3438 -1.7440 39 1 6.5137 0.8938 1.8898 40 1 4.8939 0.2755 1.4865 41 1 4.8992 -1.0083 3.6461 42 1 7.4552 0.5862 4.1373 43 1 6.6201 -0.4307 5.3357 44 1 7.3604 -1.1751 3.8979 45 1 3.8463 1.2313 3.4918 46 1 4.5683 0.9742 5.0985 47 1 5.4031 1.9915 3.9002 48 1 4.0069 -1.6037 -0.9471 49 1 4.0272 -0.1671 0.1081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701318305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:38 Heat of formation + Delta-G solvation = -108.077062 kcal Electronic energy + Delta-G solvation = -27999.275110 eV Core-core repulsion = 24345.846089 eV Total energy + Delta-G solvation = -3653.429021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75231 -40.55798 -38.27001 -37.78893 -35.45464 -34.28046 -34.10129 -32.65507 -30.72695 -29.90254 -28.03597 -27.08118 -26.25349 -25.48075 -23.87711 -22.21756 -21.42331 -20.09626 -19.76035 -19.14979 -18.13981 -17.87312 -17.31719 -17.07409 -16.50063 -16.23118 -15.87731 -15.83005 -15.30473 -15.02674 -14.84394 -14.50091 -14.44484 -14.23981 -14.15321 -13.88996 -13.66165 -13.56914 -13.28402 -13.09124 -13.03308 -12.97854 -12.71503 -12.57950 -12.49555 -12.26237 -12.01711 -11.97339 -11.88957 -11.79393 -11.72140 -11.65058 -11.48363 -10.96894 -10.85431 -10.61195 -9.74029 -9.42393 -8.36880 -6.42180 1.28898 1.32734 1.41538 1.51892 1.67170 2.03336 2.26533 2.28178 2.97057 3.47405 3.51505 3.73990 3.81808 3.88300 3.95929 4.02275 4.08800 4.11658 4.21737 4.38950 4.50153 4.53860 4.59647 4.61126 4.67142 4.70273 4.73292 4.76442 4.82940 4.87113 4.91875 4.92983 4.99650 5.00978 5.04094 5.12160 5.18710 5.20292 5.36369 5.38943 5.39414 5.42869 5.46567 5.62159 6.20541 6.43407 6.58878 6.63304 7.15549 7.17167 7.34171 8.80420 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.004563 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.225577 B = 6134.474941 C = 6534.919590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.500 3.500 3 O -0.600 6.600 4 N -0.608 5.608 5 C 0.098 3.902 6 C -0.123 4.123 7 C -0.101 4.101 8 C -0.104 4.104 9 H 0.112 0.888 10 C 0.505 3.495 11 O -0.586 6.586 12 N -0.592 5.592 13 C 0.228 3.772 14 C -0.538 4.538 15 H 0.025 0.975 16 C 0.013 3.987 17 N -0.945 5.945 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.239 1.239 22 C 0.108 3.892 23 C -0.105 4.105 24 C -0.147 4.147 25 C -0.136 4.136 26 C 0.125 3.875 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.019 0.981 38 H 0.269 0.731 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.405 -3.170 12.094 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.292 3.708 3 O -0.482 6.482 4 N -0.341 5.341 5 C -0.023 4.023 6 C -0.160 4.160 7 C -0.139 4.139 8 C -0.126 4.126 9 H 0.130 0.870 10 C 0.293 3.707 11 O -0.467 6.467 12 N -0.321 5.321 13 C 0.106 3.894 14 C -0.576 4.576 15 H 0.043 0.957 16 C -0.185 4.185 17 N -0.585 5.585 18 Si 0.769 3.231 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.162 1.162 22 C -0.015 4.015 23 C -0.124 4.124 24 C -0.204 4.204 25 C -0.194 4.194 26 C 0.001 3.999 27 H 0.138 0.862 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.688 -3.104 11.778 25.751 hybrid contribution 1.672 -0.048 -0.549 1.760 sum -21.017 -3.152 11.229 24.036 Atomic orbital electron populations 1.21973 0.87085 1.06263 1.06696 1.21898 0.92742 0.82050 0.74135 1.90723 1.72215 1.32988 1.52235 1.48285 1.05092 1.07853 1.72859 1.22189 0.98390 0.82169 0.99565 1.21930 0.92800 1.02097 0.99209 1.21386 0.96735 0.93075 1.02729 1.21740 0.89520 1.00216 1.01156 0.86998 1.21087 0.90198 0.82797 0.76592 1.90617 1.77122 1.30545 1.48409 1.47963 1.07105 1.15759 1.61291 1.19347 0.78167 0.96472 0.95432 1.21567 0.93082 1.42293 1.00675 0.95704 1.25843 1.00724 0.94723 0.97256 1.70056 1.17420 1.48403 1.22635 0.85737 0.78214 0.78693 0.80494 1.19903 1.19842 1.16193 1.21907 0.98584 0.86296 0.94696 1.21540 0.97678 1.00107 0.93098 1.21864 0.96790 1.01237 1.00488 1.21714 0.99711 0.96250 1.01710 1.21285 0.81837 1.00139 0.96626 0.86150 0.89267 0.86877 0.85098 0.90808 0.89999 0.87266 0.91435 0.92666 0.93285 0.96297 0.92237 0.91171 0.90527 0.90721 0.92812 0.90613 0.94551 0.92518 0.90461 0.92559 0.93195 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.67 71.24 0.62 -1.08 16 2 C 0.50 11.64 7.81 87.66 0.68 12.33 16 3 O -0.60 -20.77 16.50 -3.04 -0.05 -20.82 16 4 N -0.61 -13.49 2.97 -818.13 -2.43 -15.92 16 5 C 0.10 1.24 6.34 86.36 0.55 1.78 16 6 C -0.12 -1.59 6.08 30.67 0.19 -1.41 16 7 C -0.10 -2.44 4.56 30.62 0.14 -2.30 16 8 C -0.10 -3.12 1.85 -11.33 -0.02 -3.14 16 9 H 0.11 2.91 5.83 -2.39 -0.01 2.89 16 10 C 0.51 21.25 6.82 87.66 0.60 21.84 16 11 O -0.59 -29.73 15.59 -3.04 -0.05 -29.77 16 12 N -0.59 -25.44 2.17 -826.12 -1.79 -27.24 16 13 C 0.23 11.55 3.34 85.63 0.29 11.84 16 14 C -0.54 -32.91 9.94 25.60 0.25 -32.65 16 15 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 16 C 0.01 0.76 5.47 84.65 0.46 1.23 16 17 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 18 Si 0.95 45.71 27.47 68.60 1.88 47.59 16 19 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.24 -10.41 6.54 99.48 0.65 -9.75 16 22 C 0.11 3.75 4.48 86.38 0.39 4.13 16 23 C -0.10 -2.75 2.84 -10.79 -0.03 -2.78 16 24 C -0.15 -3.97 8.37 71.98 0.60 -3.36 16 25 C -0.14 -2.84 9.19 71.98 0.66 -2.18 16 26 C 0.13 3.95 5.49 86.50 0.48 4.42 16 27 H 0.12 0.52 7.69 -2.39 -0.02 0.50 16 28 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 29 H 0.11 0.66 7.94 -2.39 -0.02 0.64 16 30 H 0.13 0.56 5.93 -2.39 -0.01 0.55 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.05 1.57 7.97 -2.39 -0.02 1.55 16 36 H 0.05 2.32 5.82 -2.39 -0.01 2.30 16 37 H 0.02 1.02 6.81 -2.38 -0.02 1.01 16 38 H 0.27 16.19 8.31 -92.72 -0.77 15.42 16 39 H 0.07 2.64 8.02 -2.38 -0.02 2.62 16 40 H 0.08 2.61 4.77 -2.39 -0.01 2.60 16 41 H 0.07 1.85 6.71 -2.39 -0.02 1.83 16 42 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.04 1.16 6.42 -2.39 -0.02 1.14 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 49 H 0.08 2.81 4.82 -2.39 -0.01 2.80 16 Total: -1.00 -86.04 375.32 4.59 -81.46 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.87 Total: 17.19 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.85 Total: 8.68 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -3.92 Total: -104.32 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.10 Total: -50.59 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.59 kcal Total: -86.04 4.59 -81.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.620 kcal (2) G-P(sol) polarization free energy of solvation -86.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds