Wall clock time and date at job start Fri Apr 10 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 119.99987 * 2 1 4 4 N 1.34781 * 120.00229 * 179.72360 * 2 1 3 5 5 C 1.46925 * 120.62709 * 359.97438 * 4 2 1 6 6 C 1.53622 * 108.54259 * 126.36840 * 5 4 2 7 7 C 1.53039 * 109.24000 * 54.85759 * 6 5 4 8 8 C 1.50703 * 109.45965 * 178.49246 * 7 6 5 9 9 O 1.21283 * 120.00180 * 88.07709 * 8 7 6 10 10 N 1.34779 * 119.99780 * 268.07757 * 8 7 6 11 11 C 1.46502 * 119.99717 * 4.23273 * 10 8 7 12 12 C 1.50697 * 109.47372 * 84.55505 * 11 10 8 13 13 H 1.08002 * 119.99919 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99919 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99745 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47318 * 60.00129 * 16 14 12 18 18 H 1.48505 * 109.46870 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47046 * 299.99636 * 16 14 12 20 20 C 1.46501 * 120.00116 * 184.22633 * 10 8 7 21 21 C 1.52997 * 109.46808 * 86.67859 * 20 10 8 22 22 C 1.52999 * 109.47077 * 63.82210 * 21 20 10 23 23 C 1.53000 * 109.47311 * 183.81899 * 21 20 10 24 24 C 1.53047 * 109.53815 * 298.50857 * 7 6 5 25 25 C 1.46921 * 120.63128 * 180.27939 * 4 2 1 26 26 H 1.08998 * 109.46837 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46712 * 119.99846 * 1 2 3 28 28 H 1.08997 * 109.46968 * 240.00119 * 1 2 3 29 29 H 1.08996 * 109.58670 * 246.20024 * 5 4 2 30 30 H 1.09004 * 109.58871 * 6.62654 * 5 4 2 31 31 H 1.08997 * 109.63447 * 294.86589 * 6 5 4 32 32 H 1.09005 * 109.43043 * 174.72250 * 6 5 4 33 33 H 1.08994 * 109.45197 * 58.52488 * 7 6 5 34 34 H 1.09009 * 109.46494 * 204.55412 * 11 10 8 35 35 H 1.08999 * 109.47230 * 324.55117 * 11 10 8 36 36 H 0.96998 * 120.00236 * 180.02562 * 15 14 12 37 37 H 1.08990 * 109.47291 * 206.68180 * 20 10 8 38 38 H 1.09004 * 109.47136 * 326.68646 * 20 10 8 39 39 H 1.08999 * 109.47673 * 303.82257 * 21 20 10 40 40 H 1.09004 * 109.47505 * 59.99727 * 22 21 20 41 41 H 1.09005 * 109.47276 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47145 * 299.99749 * 22 21 20 43 43 H 1.09006 * 109.46806 * 59.99919 * 23 21 20 44 44 H 1.08993 * 109.47143 * 180.02562 * 23 21 20 45 45 H 1.08999 * 109.47044 * 300.00742 * 23 21 20 46 46 H 1.09003 * 109.49786 * 301.41700 * 24 7 6 47 47 H 1.09001 * 109.52715 * 181.33432 * 24 7 6 48 48 H 1.09004 * 109.58730 * 353.36783 * 25 4 2 49 49 H 1.09001 * 109.58881 * 113.65769 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 1.4603 -2.4476 0.0124 6 6 1.9729 -3.3028 -1.1563 7 6 3.4939 -3.4375 -1.0536 8 6 3.9980 -4.3064 -2.1769 9 8 4.2840 -3.8102 -3.2460 10 7 4.1310 -5.6350 -1.9935 11 6 3.6987 -6.2476 -0.7349 12 6 2.2220 -6.5408 -0.8000 13 1 1.6614 -6.2950 -1.6898 14 6 1.5866 -7.1228 0.2763 15 7 2.2693 -7.4225 1.3596 16 14 -0.2441 -7.4855 0.1958 17 1 -0.5151 -8.4178 -0.9278 18 1 -0.6820 -8.1077 1.4712 19 1 -0.9905 -6.2200 -0.0200 20 6 4.7077 -6.4666 -3.0528 21 6 6.2317 -6.4806 -2.9174 22 6 6.6199 -7.1409 -1.5929 23 6 6.8397 -7.2702 -4.0783 24 6 4.1381 -2.0527 -1.1517 25 6 3.6500 -1.1833 0.0119 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3632 -0.5138 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 1.6426 -2.9645 0.9545 30 1 0.3921 -2.2663 -0.1066 31 1 1.7129 -2.8255 -2.1011 32 1 1.5162 -4.2915 -1.1098 33 1 3.7543 -3.8922 -0.0978 34 1 4.2469 -7.1763 -0.5758 35 1 3.8972 -5.5627 0.0895 36 1 1.8224 -7.8323 2.1167 37 1 4.3258 -7.4836 -2.9649 38 1 4.4332 -6.0582 -4.0254 39 1 6.6077 -5.4577 -2.9373 40 1 6.2439 -8.1638 -1.5729 41 1 7.7056 -7.1512 -1.4966 42 1 6.1868 -6.5784 -0.7659 43 1 6.5630 -6.7998 -5.0219 44 1 7.9252 -7.2805 -3.9816 45 1 6.4636 -8.2931 -4.0584 46 1 3.8577 -1.5871 -2.0966 47 1 5.2226 -2.1510 -1.1023 48 1 4.0271 -0.1676 -0.1076 49 1 4.0070 -1.5971 0.9550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706285007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:41 Heat of formation + Delta-G solvation = -94.897410 kcal Electronic energy + Delta-G solvation = -27771.066198 eV Core-core repulsion = 24118.208689 eV Total energy + Delta-G solvation = -3652.857508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20328 -39.21697 -36.96072 -35.94333 -34.12027 -32.73050 -32.34026 -31.17586 -29.31179 -27.73287 -26.83979 -26.42528 -24.62437 -23.12913 -22.81491 -21.21035 -19.96352 -18.90200 -18.16014 -16.95675 -16.64142 -16.24772 -15.71478 -15.57948 -15.26842 -14.65828 -14.55113 -14.28639 -13.81838 -13.74622 -13.37280 -13.13737 -13.02992 -12.73467 -12.55512 -12.33970 -12.26790 -12.06358 -12.01899 -11.86233 -11.60752 -11.52551 -11.43961 -11.06619 -11.00438 -10.97850 -10.73313 -10.60998 -10.37188 -10.32786 -10.12223 -10.04406 -9.75361 -9.68012 -9.00426 -8.61632 -8.44373 -7.71930 -6.27025 -4.33937 2.73139 3.14415 3.16431 3.22052 3.23536 3.38628 3.89863 4.24383 4.67537 4.97728 5.05166 5.12142 5.18272 5.22849 5.26597 5.28646 5.35658 5.37630 5.44366 5.52879 5.57714 5.75272 5.80079 5.85324 5.90588 5.94271 5.99357 6.04250 6.07097 6.13365 6.14693 6.24609 6.31498 6.34883 6.40931 6.54702 6.56226 6.63326 6.70673 6.79807 6.83407 7.13979 7.50800 7.54794 7.68696 7.98799 8.27370 8.31166 8.71361 9.01471 9.33028 10.79054 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.005680 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.338811 B = 4928.675286 C = 7024.148517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.559 6.559 4 N -0.609 5.609 5 C 0.109 3.891 6 C -0.127 4.127 7 C -0.098 4.098 8 C 0.522 3.478 9 O -0.575 6.575 10 N -0.593 5.593 11 C 0.235 3.765 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.125 3.875 21 C -0.110 4.110 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.115 4.115 25 C 0.113 3.887 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 4.409 -1.808 4.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.439 6.439 4 N -0.343 5.343 5 C -0.013 4.013 6 C -0.165 4.165 7 C -0.119 4.119 8 C 0.310 3.690 9 O -0.456 6.456 10 N -0.322 5.322 11 C 0.115 3.885 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.001 3.999 21 C -0.130 4.130 22 C -0.202 4.202 23 C -0.199 4.199 24 C -0.154 4.154 25 C -0.010 4.010 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.454 5.092 -2.146 5.714 hybrid contribution -1.078 -0.634 0.149 1.260 sum 0.375 4.457 -1.997 4.899 Atomic orbital electron populations 1.21936 0.92149 1.04992 1.04289 1.20772 0.90597 0.83077 0.75494 1.90676 1.70878 1.31219 1.51083 1.48253 1.07152 1.06332 1.72540 1.21944 0.96297 0.83067 1.00023 1.22042 0.94128 1.02750 0.97561 1.21178 0.96753 0.94658 0.99341 1.20396 0.77157 0.82773 0.88634 1.90581 1.53048 1.74280 1.27734 1.48226 1.59313 1.06288 1.18397 1.19529 0.95076 0.94197 0.79659 1.21432 0.93689 1.41341 1.01007 0.92064 1.24902 0.98283 0.95152 0.95175 1.69899 1.36284 1.41659 1.04744 0.86677 0.85133 0.78949 0.77477 1.20188 1.21163 1.19902 1.21336 0.91491 0.95517 0.91570 1.21482 0.96415 0.99758 0.95355 1.21878 0.99976 1.00878 0.97465 1.21750 1.00128 1.00073 0.97991 1.21776 1.00147 0.94484 0.98981 1.21611 0.79392 1.01498 0.98475 0.89345 0.89331 0.89382 0.90305 0.89673 0.92056 0.86958 0.88268 0.94088 0.94581 0.92414 0.90615 0.91323 0.91456 0.92702 0.93704 0.91820 0.92863 0.93003 0.92716 0.90785 0.91003 0.89175 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 8.67 36.00 0.31 -1.49 16 2 C 0.51 7.51 7.81 -10.98 -0.09 7.43 16 3 O -0.56 -10.21 16.50 5.55 0.09 -10.12 16 4 N -0.61 -8.73 2.97 -172.48 -0.51 -9.24 16 5 C 0.11 1.49 6.37 -3.49 -0.02 1.47 16 6 C -0.13 -2.06 5.35 -26.39 -0.14 -2.20 16 7 C -0.10 -1.68 1.90 -91.73 -0.17 -1.85 16 8 C 0.52 10.29 6.64 -10.98 -0.07 10.22 16 9 O -0.58 -12.61 15.85 5.56 0.09 -12.52 16 10 N -0.59 -11.57 2.21 -175.06 -0.39 -11.96 16 11 C 0.24 5.04 3.84 -5.19 -0.02 5.02 16 12 C -0.54 -12.48 7.40 -34.44 -0.25 -12.73 16 13 H 0.06 1.46 7.36 -52.49 -0.39 1.08 16 14 C 0.07 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -22.53 13.29 55.43 0.74 -21.79 16 16 Si 0.89 18.86 29.54 -169.99 -5.02 13.84 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C 0.12 2.20 4.85 -4.04 -0.02 2.18 16 21 C -0.11 -1.70 3.12 -90.62 -0.28 -1.98 16 22 C -0.14 -2.18 8.22 37.16 0.31 -1.88 16 23 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 24 C -0.12 -1.79 4.96 -26.59 -0.13 -1.92 16 25 C 0.11 1.62 6.43 -3.69 -0.02 1.59 16 26 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 27 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 28 H 0.09 0.76 7.93 -51.93 -0.41 0.35 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 0.97 5.94 -51.93 -0.31 0.66 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 2.06 5.49 -51.93 -0.29 1.78 16 33 H 0.10 1.76 5.91 -51.93 -0.31 1.45 16 34 H 0.04 0.93 6.63 -51.92 -0.34 0.59 16 35 H 0.04 0.80 5.93 -51.93 -0.31 0.50 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.08 1.33 8.05 -51.93 -0.42 0.92 16 38 H 0.07 1.26 7.47 -51.93 -0.39 0.87 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.07 6.26 -51.93 -0.33 0.74 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.27 7.90 -51.93 -0.41 0.86 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 49 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -28.43 379.28 -8.09 -36.52 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.44 Total: 5.63 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.37 Total: 3.93 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.16 Total: -43.00 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.18 Total: -22.64 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.43 -8.09 -36.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706285007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.376 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds