Wall clock time and date at job start Fri Apr 10 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 119.99987 * 2 1 4 4 N 1.34781 * 120.00229 * 179.72360 * 2 1 3 5 5 C 1.46925 * 120.62709 * 359.97438 * 4 2 1 6 6 C 1.53622 * 108.54259 * 126.36840 * 5 4 2 7 7 C 1.53039 * 109.24000 * 54.85759 * 6 5 4 8 8 C 1.50703 * 109.45965 * 178.49246 * 7 6 5 9 9 O 1.21283 * 120.00180 * 88.07709 * 8 7 6 10 10 N 1.34779 * 119.99780 * 268.07757 * 8 7 6 11 11 C 1.46502 * 119.99717 * 4.23273 * 10 8 7 12 12 C 1.50697 * 109.47372 * 84.55505 * 11 10 8 13 13 H 1.08002 * 119.99919 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99919 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99745 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47318 * 60.00129 * 16 14 12 18 18 H 1.48505 * 109.46870 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47046 * 299.99636 * 16 14 12 20 20 C 1.46501 * 120.00116 * 184.22633 * 10 8 7 21 21 C 1.52997 * 109.46808 * 86.67859 * 20 10 8 22 22 C 1.52999 * 109.47077 * 63.82210 * 21 20 10 23 23 C 1.53000 * 109.47311 * 183.81899 * 21 20 10 24 24 C 1.53047 * 109.53815 * 298.50857 * 7 6 5 25 25 C 1.46921 * 120.63128 * 180.27939 * 4 2 1 26 26 H 1.08998 * 109.46837 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46712 * 119.99846 * 1 2 3 28 28 H 1.08997 * 109.46968 * 240.00119 * 1 2 3 29 29 H 1.08996 * 109.58670 * 246.20024 * 5 4 2 30 30 H 1.09004 * 109.58871 * 6.62654 * 5 4 2 31 31 H 1.08997 * 109.63447 * 294.86589 * 6 5 4 32 32 H 1.09005 * 109.43043 * 174.72250 * 6 5 4 33 33 H 1.08994 * 109.45197 * 58.52488 * 7 6 5 34 34 H 1.09009 * 109.46494 * 204.55412 * 11 10 8 35 35 H 1.08999 * 109.47230 * 324.55117 * 11 10 8 36 36 H 0.96998 * 120.00236 * 180.02562 * 15 14 12 37 37 H 1.08990 * 109.47291 * 206.68180 * 20 10 8 38 38 H 1.09004 * 109.47136 * 326.68646 * 20 10 8 39 39 H 1.08999 * 109.47673 * 303.82257 * 21 20 10 40 40 H 1.09004 * 109.47505 * 59.99727 * 22 21 20 41 41 H 1.09005 * 109.47276 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47145 * 299.99749 * 22 21 20 43 43 H 1.09006 * 109.46806 * 59.99919 * 23 21 20 44 44 H 1.08993 * 109.47143 * 180.02562 * 23 21 20 45 45 H 1.08999 * 109.47044 * 300.00742 * 23 21 20 46 46 H 1.09003 * 109.49786 * 301.41700 * 24 7 6 47 47 H 1.09001 * 109.52715 * 181.33432 * 24 7 6 48 48 H 1.09004 * 109.58730 * 353.36783 * 25 4 2 49 49 H 1.09001 * 109.58881 * 113.65769 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 1.4603 -2.4476 0.0124 6 6 1.9729 -3.3028 -1.1563 7 6 3.4939 -3.4375 -1.0536 8 6 3.9980 -4.3064 -2.1769 9 8 4.2840 -3.8102 -3.2460 10 7 4.1310 -5.6350 -1.9935 11 6 3.6987 -6.2476 -0.7349 12 6 2.2220 -6.5408 -0.8000 13 1 1.6614 -6.2950 -1.6898 14 6 1.5866 -7.1228 0.2763 15 7 2.2693 -7.4225 1.3596 16 14 -0.2441 -7.4855 0.1958 17 1 -0.5151 -8.4178 -0.9278 18 1 -0.6820 -8.1077 1.4712 19 1 -0.9905 -6.2200 -0.0200 20 6 4.7077 -6.4666 -3.0528 21 6 6.2317 -6.4806 -2.9174 22 6 6.6199 -7.1409 -1.5929 23 6 6.8397 -7.2702 -4.0783 24 6 4.1381 -2.0527 -1.1517 25 6 3.6500 -1.1833 0.0119 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3632 -0.5138 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 1.6426 -2.9645 0.9545 30 1 0.3921 -2.2663 -0.1066 31 1 1.7129 -2.8255 -2.1011 32 1 1.5162 -4.2915 -1.1098 33 1 3.7543 -3.8922 -0.0978 34 1 4.2469 -7.1763 -0.5758 35 1 3.8972 -5.5627 0.0895 36 1 1.8224 -7.8323 2.1167 37 1 4.3258 -7.4836 -2.9649 38 1 4.4332 -6.0582 -4.0254 39 1 6.6077 -5.4577 -2.9373 40 1 6.2439 -8.1638 -1.5729 41 1 7.7056 -7.1512 -1.4966 42 1 6.1868 -6.5784 -0.7659 43 1 6.5630 -6.7998 -5.0219 44 1 7.9252 -7.2805 -3.9816 45 1 6.4636 -8.2931 -4.0584 46 1 3.8577 -1.5871 -2.0966 47 1 5.2226 -2.1510 -1.1023 48 1 4.0271 -0.1676 -0.1076 49 1 4.0070 -1.5971 0.9550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706285007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:40 Heat of formation + Delta-G solvation = -109.526012 kcal Electronic energy + Delta-G solvation = -27771.700541 eV Core-core repulsion = 24118.208689 eV Total energy + Delta-G solvation = -3653.491852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55032 -40.61139 -38.26664 -37.41694 -35.69388 -34.19116 -33.90114 -32.37490 -30.31665 -29.43150 -28.00308 -27.85634 -25.97378 -24.74449 -24.17491 -22.50480 -21.24518 -20.14419 -19.65244 -18.51599 -18.12259 -17.79123 -17.12098 -16.82616 -16.42563 -16.34306 -16.02036 -15.68098 -15.10516 -14.99705 -14.61397 -14.52755 -14.27642 -14.08142 -13.98635 -13.62214 -13.55538 -13.36032 -13.10213 -13.03909 -13.01261 -12.92857 -12.79147 -12.66099 -12.54068 -12.23719 -12.09435 -12.02075 -11.88459 -11.65769 -11.59640 -11.47910 -11.44261 -10.88601 -10.61927 -10.40142 -9.68269 -9.36733 -8.12087 -6.24525 1.47330 1.51225 1.56310 1.60785 1.79352 2.05219 2.34410 2.51012 3.18551 3.58206 3.69983 3.79897 3.93554 3.97822 4.04439 4.11054 4.19559 4.25642 4.34050 4.44418 4.53117 4.57834 4.62783 4.66796 4.72220 4.75464 4.79610 4.80912 4.84477 4.91285 4.97416 4.99237 5.02355 5.06571 5.11577 5.20163 5.25391 5.26981 5.39163 5.41475 5.45400 5.55756 5.73516 5.93907 6.15714 6.42626 6.62921 6.89299 7.14058 7.36850 7.49019 8.92799 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.005680 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.338811 B = 4928.675286 C = 7024.148517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.505 3.495 3 O -0.601 6.601 4 N -0.610 5.610 5 C 0.116 3.884 6 C -0.121 4.121 7 C -0.094 4.094 8 C 0.517 3.483 9 O -0.600 6.600 10 N -0.594 5.594 11 C 0.252 3.748 12 C -0.535 4.535 13 H 0.054 0.946 14 C 0.032 3.968 15 N -0.916 5.916 16 Si 0.942 3.058 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.257 1.257 20 C 0.121 3.879 21 C -0.104 4.104 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.104 4.104 25 C 0.115 3.885 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 4.301 -1.668 4.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.296 3.704 3 O -0.483 6.483 4 N -0.343 5.343 5 C -0.006 4.006 6 C -0.160 4.160 7 C -0.115 4.115 8 C 0.306 3.694 9 O -0.483 6.483 10 N -0.322 5.322 11 C 0.132 3.868 12 C -0.574 4.574 13 H 0.072 0.928 14 C -0.169 4.169 15 N -0.555 5.555 16 Si 0.768 3.232 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.182 1.182 20 C -0.002 4.002 21 C -0.123 4.123 22 C -0.196 4.196 23 C -0.193 4.193 24 C -0.143 4.143 25 C -0.007 4.007 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.443 4.968 -2.015 5.380 hybrid contribution -0.714 -0.636 0.058 0.957 sum -0.270 4.333 -1.958 4.762 Atomic orbital electron populations 1.21981 0.88486 1.06156 1.06125 1.21587 0.92370 0.82235 0.74220 1.90658 1.72107 1.32569 1.52995 1.48343 1.07061 1.06721 1.72169 1.21958 0.97810 0.82198 0.98662 1.21949 0.93124 1.02216 0.98679 1.21175 0.97664 0.94849 0.97830 1.20847 0.76661 0.82902 0.88957 1.90562 1.54221 1.74610 1.28887 1.48245 1.59221 1.06583 1.18188 1.19210 0.94147 0.93330 0.80158 1.21535 0.94370 1.40887 1.00588 0.92801 1.25470 1.01572 0.95014 0.94834 1.69990 1.37658 1.42582 1.05315 0.85854 0.81307 0.79188 0.76889 1.20765 1.21390 1.18163 1.21470 0.93223 0.94974 0.90574 1.21403 0.94588 0.99474 0.96864 1.21812 1.01217 1.00279 0.96310 1.21707 1.01051 0.99963 0.96615 1.21659 1.00339 0.93546 0.98717 1.21554 0.79979 1.00836 0.98370 0.88725 0.87636 0.87070 0.90208 0.86567 0.92498 0.88861 0.88813 0.95450 0.95381 0.92483 0.90711 0.92161 0.93028 0.92704 0.91570 0.94081 0.92698 0.91244 0.91816 0.92500 0.90607 0.89745 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.67 71.24 0.62 -2.36 16 2 C 0.50 14.00 7.81 87.66 0.68 14.69 16 3 O -0.60 -21.61 16.50 -3.07 -0.05 -21.66 16 4 N -0.61 -16.61 2.97 -817.99 -2.43 -19.03 16 5 C 0.12 2.92 6.37 86.51 0.55 3.47 16 6 C -0.12 -3.85 5.35 30.82 0.16 -3.69 16 7 C -0.09 -3.23 1.90 -11.51 -0.02 -3.25 16 8 C 0.52 20.68 6.64 87.66 0.58 21.26 16 9 O -0.60 -26.71 15.85 -3.04 -0.05 -26.76 16 10 N -0.59 -23.54 2.21 -826.15 -1.83 -25.37 16 11 C 0.25 10.94 3.84 85.63 0.33 11.27 16 12 C -0.54 -24.87 7.40 25.60 0.19 -24.68 16 13 H 0.05 2.56 7.36 -2.91 -0.02 2.54 16 14 C 0.03 1.52 5.46 84.65 0.46 1.98 16 15 N -0.92 -46.31 13.29 21.45 0.28 -46.02 16 16 Si 0.94 37.75 29.54 68.60 2.03 39.78 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 20 C 0.12 4.30 4.85 86.38 0.42 4.72 16 21 C -0.10 -3.15 3.12 -10.79 -0.03 -3.18 16 22 C -0.14 -4.11 8.22 71.98 0.59 -3.52 16 23 C -0.14 -3.23 9.19 71.98 0.66 -2.57 16 24 C -0.10 -3.24 4.96 30.69 0.15 -3.09 16 25 C 0.12 3.24 6.43 86.38 0.56 3.80 16 26 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 27 H 0.11 1.54 7.71 -2.39 -0.02 1.52 16 28 H 0.11 1.48 7.93 -2.39 -0.02 1.46 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.12 2.23 5.94 -2.38 -0.01 2.21 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 3.37 5.49 -2.38 -0.01 3.36 16 33 H 0.09 3.34 5.91 -2.39 -0.01 3.33 16 34 H 0.03 1.27 6.63 -2.38 -0.02 1.25 16 35 H 0.03 1.28 5.93 -2.39 -0.01 1.26 16 36 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 37 H 0.07 2.65 8.05 -2.39 -0.02 2.63 16 38 H 0.06 2.24 7.47 -2.39 -0.02 2.22 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.04 1.38 6.26 -2.39 -0.01 1.37 16 43 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.97 7.90 -2.39 -0.02 1.95 16 47 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.08 2.51 7.01 -2.39 -0.02 2.49 16 49 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -61.05 379.28 4.78 -56.27 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.92 Total: 27.93 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.90 Total: 14.86 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -3.97 Total: -90.42 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.10 Total: -48.42 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -61.05 4.78 -56.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706285007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.252 kcal (2) G-P(sol) polarization free energy of solvation -61.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds