Wall clock time and date at job start Fri Apr 10 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47099 * 2 1 4 4 C 1.53000 * 109.47208 * 120.00311 * 2 1 3 5 5 N 1.46504 * 109.46913 * 64.99476 * 4 2 1 6 6 C 1.46496 * 120.00275 * 269.99798 * 5 4 2 7 7 C 1.50703 * 109.47458 * 270.00554 * 6 5 4 8 8 H 1.07997 * 119.99364 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99878 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00456 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99863 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47024 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47385 * 119.99723 * 11 9 7 14 14 H 1.48499 * 109.47239 * 240.00152 * 11 9 7 15 15 C 1.34777 * 119.99858 * 90.00448 * 5 4 2 16 16 O 1.21279 * 120.00166 * 180.02562 * 15 5 4 17 17 C 1.50706 * 120.00142 * 359.97438 * 15 5 4 18 18 C 1.52999 * 109.46957 * 180.02562 * 17 15 5 19 19 C 1.53006 * 109.46626 * 180.02562 * 18 17 15 20 20 N 1.46500 * 109.46998 * 179.97438 * 19 18 17 21 21 C 1.34769 * 120.00241 * 180.02562 * 20 19 18 22 22 O 1.21282 * 119.99850 * 359.97438 * 21 20 19 23 23 C 1.50702 * 120.00466 * 179.97438 * 21 20 19 24 24 C 1.52993 * 117.50134 * 248.62077 * 23 21 20 25 25 C 1.52992 * 60.00113 * 252.50748 * 24 23 21 26 26 H 1.08991 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46596 * 299.99813 * 1 2 3 28 28 H 1.09004 * 109.46902 * 59.99520 * 1 2 3 29 29 H 1.09001 * 109.46596 * 240.00187 * 2 1 3 30 30 H 1.09006 * 109.46872 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47225 * 299.99720 * 3 2 1 32 32 H 1.09001 * 109.47244 * 60.00584 * 3 2 1 33 33 H 1.08994 * 109.47070 * 304.99891 * 4 2 1 34 34 H 1.08996 * 109.47306 * 184.99635 * 4 2 1 35 35 H 1.09002 * 109.47055 * 30.00737 * 6 5 4 36 36 H 1.09004 * 109.47419 * 150.00116 * 6 5 4 37 37 H 0.96999 * 120.00041 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.46700 * 59.99973 * 17 15 5 39 39 H 1.09000 * 109.46974 * 300.00347 * 17 15 5 40 40 H 1.08993 * 109.47839 * 60.00178 * 18 17 15 41 41 H 1.09000 * 109.47160 * 299.99740 * 18 17 15 42 42 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 43 43 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 44 44 H 0.97010 * 119.99910 * 359.97438 * 20 19 18 45 45 H 1.09006 * 115.54572 * 34.32703 * 23 21 20 46 46 H 1.09004 * 117.50164 * 359.97438 * 24 23 21 47 47 H 1.09006 * 117.50291 * 145.01542 * 24 23 21 48 48 H 1.08997 * 117.49927 * 252.51226 * 25 24 23 49 49 H 1.09002 * 117.51900 * 107.47687 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7612 7 6 0.5716 -2.9409 3.2075 8 1 1.5509 -2.8646 3.6564 9 6 -0.4980 -3.3822 3.9571 10 7 -1.6902 -3.4765 3.4099 11 14 -0.2536 -3.8476 5.7496 12 1 1.1713 -3.6554 6.1211 13 1 -1.1092 -2.9872 6.6055 14 1 -0.6284 -5.2709 5.9470 15 6 2.4714 -3.0331 0.6114 16 8 2.1503 -4.2016 0.5624 17 6 3.7858 -2.5876 0.0239 18 6 4.5161 -3.7955 -0.5664 19 6 5.8508 -3.3432 -1.1623 20 7 6.5504 -4.4999 -1.7270 21 6 7.7553 -4.3404 -2.3093 22 8 8.2601 -3.2391 -2.3664 23 6 8.4753 -5.5303 -2.8897 24 6 9.7514 -5.9960 -2.1861 25 6 9.8393 -5.2838 -3.5372 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6055 -0.2619 2.1369 34 1 3.1264 -0.6445 1.2951 35 1 -0.3484 -1.7532 1.6918 36 1 0.0041 -3.4298 1.2091 37 1 -2.4428 -3.7867 3.9375 38 1 4.3989 -2.1378 0.8048 39 1 3.6027 -1.8546 -0.7617 40 1 3.9029 -4.2450 -1.3473 41 1 4.6992 -4.5289 0.2190 42 1 5.6681 -2.6097 -1.9476 43 1 6.4639 -2.8941 -0.3810 44 1 6.1467 -5.3808 -1.6810 45 1 7.8377 -6.2945 -3.3344 46 1 10.0706 -5.4416 -1.3035 47 1 9.9538 -7.0670 -2.1674 48 1 10.0994 -5.8861 -4.4076 49 1 10.2159 -4.2609 -3.5438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745382448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:43 Heat of formation + Delta-G solvation = -73.760344 kcal Electronic energy + Delta-G solvation = -25728.796078 eV Core-core repulsion = 22076.855142 eV Total energy + Delta-G solvation = -3651.940936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12590 -39.28722 -36.78887 -36.37511 -35.44273 -33.59587 -32.64455 -32.19856 -28.46837 -26.94602 -26.80694 -25.41530 -24.27442 -22.79617 -22.64626 -21.51348 -20.28924 -20.08535 -18.29612 -17.66449 -16.61797 -16.46981 -15.99986 -15.84525 -15.47109 -15.32380 -14.75146 -14.51221 -14.40014 -14.06319 -13.87974 -13.30302 -13.03254 -12.81364 -12.46251 -12.28624 -12.15794 -12.05516 -11.91873 -11.84626 -11.63788 -11.38364 -11.24972 -10.99602 -10.96299 -10.93829 -10.89218 -10.82129 -10.66552 -10.41502 -10.26632 -10.12681 -10.04852 -9.56902 -9.23646 -8.89596 -8.42971 -7.62265 -6.04650 -4.08827 2.28909 2.91954 3.28684 3.36003 3.38954 3.44952 3.54508 3.94492 4.38680 4.44109 4.48105 4.54860 4.76080 4.84344 5.00087 5.07793 5.11369 5.17387 5.24956 5.27438 5.29938 5.40509 5.47141 5.54863 5.59533 5.63299 5.67725 5.77951 5.78631 5.85459 5.89239 6.10700 6.13606 6.17312 6.19193 6.20703 6.31442 6.33067 6.56762 6.69442 7.10784 7.31696 7.44846 7.56932 7.92243 8.03717 8.24753 8.44252 8.90698 9.10651 9.56208 11.03260 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.002770 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.554995 B =10104.506066 C =11586.547965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.115 3.885 5 N -0.595 5.595 6 C 0.242 3.758 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.505 3.495 16 O -0.545 6.545 17 C -0.138 4.138 18 C -0.115 4.115 19 C 0.118 3.882 20 N -0.724 5.724 21 C 0.541 3.459 22 O -0.544 6.544 23 C -0.196 4.196 24 C -0.153 4.153 25 C -0.149 4.149 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.404 0.596 45 H 0.124 0.876 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.488 1.837 -11.999 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.010 4.010 5 N -0.325 5.325 6 C 0.123 3.877 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.291 3.709 16 O -0.423 6.423 17 C -0.178 4.178 18 C -0.153 4.153 19 C -0.005 4.005 20 N -0.375 5.375 21 C 0.327 3.673 22 O -0.422 6.422 23 C -0.217 4.217 24 C -0.190 4.190 25 C -0.186 4.186 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.238 0.762 45 H 0.142 0.858 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.443 1.978 -11.993 20.448 hybrid contribution -0.348 -0.631 1.118 1.330 sum 16.095 1.347 -10.874 19.471 Atomic orbital electron populations 1.21931 0.94652 1.03054 1.00960 1.21583 0.97076 0.95808 0.98855 1.21785 1.00585 0.96020 1.01777 1.21550 0.99091 0.82375 0.97946 1.48207 1.21790 1.06334 1.56213 1.19397 0.78788 0.96338 0.93224 1.21486 0.95033 1.44182 0.95589 0.92539 1.24925 0.95084 0.95484 0.98653 1.69936 0.99828 1.47162 1.36491 0.86472 0.78140 0.78224 0.84756 1.19842 1.20995 1.20927 1.20269 0.85539 0.86128 0.78940 1.90661 1.75281 1.17536 1.58798 1.21607 0.95788 0.98983 1.01459 1.21508 0.94025 0.98318 1.01457 1.21441 0.92904 0.88065 0.98084 1.45957 1.19898 1.12187 1.59449 1.19665 0.80903 0.89288 0.77458 1.90694 1.66678 1.26591 1.58234 1.22214 0.92074 1.00043 1.07405 1.22943 0.97622 1.01367 0.97107 1.22947 0.96307 1.02994 0.96356 0.91282 0.92520 0.93658 0.91607 0.92868 0.92861 0.92495 0.90008 0.91626 0.94181 0.94149 0.92820 0.89286 0.89380 0.90530 0.90410 0.91397 0.91412 0.76176 0.85782 0.88221 0.87725 0.87931 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.18 37.16 0.30 -1.93 16 2 C -0.11 -1.52 3.12 -90.62 -0.28 -1.80 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C 0.11 1.80 4.70 -4.04 -0.02 1.78 16 5 N -0.59 -12.05 2.28 -175.06 -0.40 -12.45 16 6 C 0.24 6.13 4.23 -5.19 -0.02 6.11 16 7 C -0.52 -14.66 9.39 -34.44 -0.32 -14.98 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 11 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.50 9.97 7.67 -10.98 -0.08 9.88 16 16 O -0.54 -13.15 15.56 5.56 0.09 -13.06 16 17 C -0.14 -1.88 4.25 -27.88 -0.12 -1.99 16 18 C -0.11 -1.42 4.62 -26.73 -0.12 -1.54 16 19 C 0.12 1.30 5.67 -4.04 -0.02 1.27 16 20 N -0.72 -7.30 5.56 -60.29 -0.33 -7.64 16 21 C 0.54 6.16 7.61 -10.99 -0.08 6.08 16 22 O -0.54 -8.24 16.26 5.56 0.09 -8.15 16 23 C -0.20 -1.59 6.19 -91.78 -0.57 -2.16 16 24 C -0.15 -1.06 10.23 -26.74 -0.27 -1.34 16 25 C -0.15 -1.11 10.04 -26.74 -0.27 -1.38 16 26 H 0.07 1.24 5.89 -51.93 -0.31 0.93 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.87 7.30 -51.93 -0.38 0.49 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 35 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 36 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 39 H 0.09 1.03 7.26 -51.93 -0.38 0.65 16 40 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.40 3.21 8.47 -40.82 -0.35 2.86 16 45 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -34.53 398.16 -9.16 -43.69 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.68 Total: 2.07 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.64 Total: -1.58 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.00 Total: -45.71 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.53 -9.16 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.074 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds