Wall clock time and date at job start Fri Apr 10 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47099 * 2 1 4 4 C 1.53000 * 109.47208 * 120.00311 * 2 1 3 5 5 N 1.46504 * 109.46913 * 64.99476 * 4 2 1 6 6 C 1.46496 * 120.00275 * 269.99798 * 5 4 2 7 7 C 1.50703 * 109.47458 * 270.00554 * 6 5 4 8 8 H 1.07997 * 119.99364 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99878 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00456 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99863 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47024 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47385 * 119.99723 * 11 9 7 14 14 H 1.48499 * 109.47239 * 240.00152 * 11 9 7 15 15 C 1.34777 * 119.99858 * 90.00448 * 5 4 2 16 16 O 1.21279 * 120.00166 * 180.02562 * 15 5 4 17 17 C 1.50706 * 120.00142 * 359.97438 * 15 5 4 18 18 C 1.52999 * 109.46957 * 180.02562 * 17 15 5 19 19 C 1.53006 * 109.46626 * 180.02562 * 18 17 15 20 20 N 1.46500 * 109.46998 * 179.97438 * 19 18 17 21 21 C 1.34769 * 120.00241 * 180.02562 * 20 19 18 22 22 O 1.21282 * 119.99850 * 359.97438 * 21 20 19 23 23 C 1.50702 * 120.00466 * 179.97438 * 21 20 19 24 24 C 1.52993 * 117.50134 * 248.62077 * 23 21 20 25 25 C 1.52992 * 60.00113 * 252.50748 * 24 23 21 26 26 H 1.08991 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46596 * 299.99813 * 1 2 3 28 28 H 1.09004 * 109.46902 * 59.99520 * 1 2 3 29 29 H 1.09001 * 109.46596 * 240.00187 * 2 1 3 30 30 H 1.09006 * 109.46872 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47225 * 299.99720 * 3 2 1 32 32 H 1.09001 * 109.47244 * 60.00584 * 3 2 1 33 33 H 1.08994 * 109.47070 * 304.99891 * 4 2 1 34 34 H 1.08996 * 109.47306 * 184.99635 * 4 2 1 35 35 H 1.09002 * 109.47055 * 30.00737 * 6 5 4 36 36 H 1.09004 * 109.47419 * 150.00116 * 6 5 4 37 37 H 0.96999 * 120.00041 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.46700 * 59.99973 * 17 15 5 39 39 H 1.09000 * 109.46974 * 300.00347 * 17 15 5 40 40 H 1.08993 * 109.47839 * 60.00178 * 18 17 15 41 41 H 1.09000 * 109.47160 * 299.99740 * 18 17 15 42 42 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 43 43 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 44 44 H 0.97010 * 119.99910 * 359.97438 * 20 19 18 45 45 H 1.09006 * 115.54572 * 34.32703 * 23 21 20 46 46 H 1.09004 * 117.50164 * 359.97438 * 24 23 21 47 47 H 1.09006 * 117.50291 * 145.01542 * 24 23 21 48 48 H 1.08997 * 117.49927 * 252.51226 * 25 24 23 49 49 H 1.09002 * 117.51900 * 107.47687 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7612 7 6 0.5716 -2.9409 3.2075 8 1 1.5509 -2.8646 3.6564 9 6 -0.4980 -3.3822 3.9571 10 7 -1.6902 -3.4765 3.4099 11 14 -0.2536 -3.8476 5.7496 12 1 1.1713 -3.6554 6.1211 13 1 -1.1092 -2.9872 6.6055 14 1 -0.6284 -5.2709 5.9470 15 6 2.4714 -3.0331 0.6114 16 8 2.1503 -4.2016 0.5624 17 6 3.7858 -2.5876 0.0239 18 6 4.5161 -3.7955 -0.5664 19 6 5.8508 -3.3432 -1.1623 20 7 6.5504 -4.4999 -1.7270 21 6 7.7553 -4.3404 -2.3093 22 8 8.2601 -3.2391 -2.3664 23 6 8.4753 -5.5303 -2.8897 24 6 9.7514 -5.9960 -2.1861 25 6 9.8393 -5.2838 -3.5372 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6055 -0.2619 2.1369 34 1 3.1264 -0.6445 1.2951 35 1 -0.3484 -1.7532 1.6918 36 1 0.0041 -3.4298 1.2091 37 1 -2.4428 -3.7867 3.9375 38 1 4.3989 -2.1378 0.8048 39 1 3.6027 -1.8546 -0.7617 40 1 3.9029 -4.2450 -1.3473 41 1 4.6992 -4.5289 0.2190 42 1 5.6681 -2.6097 -1.9476 43 1 6.4639 -2.8941 -0.3810 44 1 6.1467 -5.3808 -1.6810 45 1 7.8377 -6.2945 -3.3344 46 1 10.0706 -5.4416 -1.3035 47 1 9.9538 -7.0670 -2.1674 48 1 10.0994 -5.8861 -4.4076 49 1 10.2159 -4.2609 -3.5438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745382448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:43 Heat of formation + Delta-G solvation = -95.911426 kcal Electronic energy + Delta-G solvation = -25729.756621 eV Core-core repulsion = 22076.855142 eV Total energy + Delta-G solvation = -3652.901479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04469 -40.76227 -37.88509 -37.37206 -36.42365 -35.37098 -34.11413 -33.63784 -30.12899 -28.20247 -27.95381 -26.83057 -25.44885 -24.18424 -23.29485 -22.62836 -21.41716 -20.98030 -19.76630 -18.66937 -18.42578 -17.80410 -17.29340 -17.03120 -16.77721 -16.30035 -16.15591 -15.78615 -15.56889 -15.17265 -15.02099 -14.51216 -14.37553 -14.20113 -13.63489 -13.56021 -13.52335 -13.22646 -13.19275 -12.97376 -12.87224 -12.71893 -12.58165 -12.42968 -12.39993 -12.14511 -12.08082 -11.92608 -11.77962 -11.53891 -11.48625 -11.48231 -11.44046 -10.95379 -10.62453 -10.54180 -10.11928 -9.34849 -8.21293 -6.35607 1.35167 1.37248 1.47070 1.48931 1.88656 2.08599 2.34523 2.52254 2.93752 3.07837 3.60960 3.72818 3.87454 3.95061 3.97964 4.00168 4.04034 4.08371 4.20759 4.24565 4.34003 4.53401 4.59828 4.69017 4.72311 4.74065 4.75032 4.84975 4.92925 4.95195 5.04033 5.07214 5.08084 5.12594 5.15734 5.22484 5.23838 5.26668 5.32024 5.43459 5.46781 5.51712 5.61819 5.90496 6.10240 6.52145 6.72633 6.85532 7.20742 7.30072 7.53489 8.85316 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.002770 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.554995 B =10104.506066 C =11586.547965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.109 3.891 5 N -0.600 5.600 6 C 0.260 3.740 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.965 3.035 12 H -0.267 1.267 13 H -0.270 1.270 14 H -0.282 1.282 15 C 0.494 3.506 16 O -0.599 6.599 17 C -0.124 4.124 18 C -0.103 4.103 19 C 0.127 3.873 20 N -0.718 5.718 21 C 0.535 3.465 22 O -0.588 6.588 23 C -0.203 4.203 24 C -0.144 4.144 25 C -0.151 4.151 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.034 0.966 36 H -0.009 1.009 37 H 0.266 0.734 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.415 0.585 45 H 0.150 0.850 46 H 0.086 0.914 47 H 0.130 0.870 48 H 0.127 0.873 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.655 2.498 -12.227 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.194 4.194 4 C -0.013 4.013 5 N -0.330 5.330 6 C 0.139 3.861 7 C -0.579 4.579 8 H 0.069 0.931 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.789 3.211 12 H -0.191 1.191 13 H -0.195 1.195 14 H -0.208 1.208 15 C 0.283 3.717 16 O -0.481 6.481 17 C -0.164 4.164 18 C -0.142 4.142 19 C 0.004 3.996 20 N -0.369 5.369 21 C 0.323 3.677 22 O -0.469 6.469 23 C -0.224 4.224 24 C -0.182 4.182 25 C -0.189 4.189 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.052 0.948 36 H 0.009 0.991 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.251 0.749 45 H 0.168 0.832 46 H 0.105 0.895 47 H 0.148 0.852 48 H 0.145 0.855 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.621 2.663 -12.225 22.434 hybrid contribution -1.066 -0.833 1.158 1.781 sum 17.554 1.830 -11.068 20.833 Atomic orbital electron populations 1.21900 0.96404 1.00611 1.01600 1.21533 0.95501 0.97759 0.97786 1.21733 1.01851 0.93450 1.02406 1.21861 1.01189 0.79564 0.98695 1.48214 1.20208 1.08678 1.55856 1.18816 0.81341 0.94198 0.91784 1.21777 0.94837 1.44394 0.96846 0.93063 1.25832 0.94765 0.95292 1.03326 1.70056 1.00672 1.47834 1.38306 0.85408 0.78485 0.77877 0.79286 1.19127 1.19542 1.20828 1.21379 0.87061 0.85252 0.78005 1.90629 1.76759 1.19950 1.60794 1.21601 0.92147 1.00041 1.02638 1.21362 0.94520 0.97520 1.00775 1.21277 0.91902 0.88369 0.98085 1.45936 1.19649 1.12577 1.58756 1.20253 0.80883 0.89699 0.76886 1.90670 1.67711 1.28457 1.60035 1.22301 0.92546 0.99398 1.08121 1.23036 0.96223 1.02604 0.96293 1.23010 0.95743 1.02422 0.97689 0.95191 0.93352 0.91547 0.90814 0.90783 0.91600 0.92578 0.91409 0.88064 0.94847 0.99108 0.92515 0.86884 0.86448 0.91271 0.91731 0.91067 0.91455 0.74899 0.83247 0.89493 0.85164 0.85530 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 8.18 71.98 0.59 -3.86 16 2 C -0.11 -2.65 3.12 -10.79 -0.03 -2.68 16 3 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 4 C 0.11 3.29 4.70 86.38 0.41 3.69 16 5 N -0.60 -24.73 2.28 -826.15 -1.88 -26.62 16 6 C 0.26 13.90 4.23 85.63 0.36 14.26 16 7 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.38 5.46 84.65 0.46 0.84 16 10 N -0.93 -56.40 13.29 21.44 0.28 -56.12 16 11 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 C 0.49 19.66 7.67 87.66 0.67 20.33 16 16 O -0.60 -30.14 15.56 -3.03 -0.05 -30.18 16 17 C -0.12 -3.13 4.25 29.85 0.13 -3.00 16 18 C -0.10 -2.43 4.62 30.60 0.14 -2.28 16 19 C 0.13 2.56 5.67 86.38 0.49 3.05 16 20 N -0.72 -13.45 5.56 -463.05 -2.57 -16.02 16 21 C 0.53 11.59 7.61 87.66 0.67 12.25 16 22 O -0.59 -17.54 16.26 -3.04 -0.05 -17.59 16 23 C -0.20 -2.89 6.19 -11.54 -0.07 -2.96 16 24 C -0.14 -1.72 10.23 30.59 0.31 -1.40 16 25 C -0.15 -2.02 10.04 30.59 0.31 -1.71 16 26 H 0.03 1.11 5.89 -2.39 -0.01 1.10 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.75 7.30 -2.39 -0.02 1.73 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 34 H 0.10 2.32 6.44 -2.39 -0.02 2.31 16 35 H 0.03 1.81 5.98 -2.39 -0.01 1.80 16 36 H -0.01 -0.58 7.42 -2.38 -0.02 -0.59 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.11 2.37 7.40 -2.39 -0.02 2.36 16 39 H 0.12 2.33 7.26 -2.39 -0.02 2.31 16 40 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 41 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.41 5.95 8.47 -92.70 -0.79 5.17 16 45 H 0.15 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -79.81 398.16 3.23 -76.58 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.14 Total: 18.97 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.34 Total: 3.84 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.17 Total: -98.76 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.10 Total: -47.78 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -79.81 3.23 -76.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.329 kcal (2) G-P(sol) polarization free energy of solvation -79.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds