Wall clock time and date at job start Fri Apr 10 2020 22:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50705 * 119.99426 * 2 1 4 4 C 1.32994 * 120.00340 * 179.97438 * 2 1 3 5 5 C 1.50693 * 119.99939 * 175.12175 * 4 2 1 6 6 C 1.47103 * 119.99747 * 355.12536 * 4 2 1 7 7 O 1.21609 * 119.99552 * 264.78713 * 6 4 2 8 8 N 1.34771 * 119.99818 * 84.51821 * 6 4 2 9 9 C 1.46500 * 120.00529 * 355.26437 * 8 6 4 10 10 C 1.50693 * 109.47195 * 94.96204 * 9 8 6 11 11 H 1.07998 * 120.00233 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99814 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00066 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46949 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46777 * 119.99988 * 14 12 10 17 17 H 1.48490 * 109.47493 * 240.00074 * 14 12 10 18 18 C 1.46500 * 119.99780 * 175.26694 * 8 6 4 19 19 C 1.53000 * 109.47267 * 89.99555 * 18 8 6 20 20 N 1.46904 * 109.46846 * 180.02562 * 19 18 8 21 21 C 1.47021 * 111.00009 * 293.63336 * 20 19 18 22 22 C 1.53095 * 109.25785 * 177.60944 * 21 20 19 23 23 O 1.43021 * 109.25852 * 56.84987 * 22 21 20 24 24 C 1.43015 * 113.73729 * 301.32935 * 23 22 21 25 25 C 1.47013 * 111.00000 * 170.00258 * 20 19 18 26 26 H 1.08996 * 109.47235 * 274.92491 * 1 2 3 27 27 H 1.08999 * 109.47242 * 34.92850 * 1 2 3 28 28 H 1.09006 * 109.46457 * 154.92941 * 1 2 3 29 29 H 1.08998 * 109.46901 * 239.99622 * 3 2 1 30 30 H 1.08999 * 109.47263 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46730 * 120.00175 * 3 2 1 32 32 H 1.09003 * 109.47112 * 275.10667 * 5 4 2 33 33 H 1.09005 * 109.47569 * 35.10534 * 5 4 2 34 34 H 1.08998 * 109.47373 * 155.10552 * 5 4 2 35 35 H 1.09005 * 109.47170 * 214.96540 * 9 8 6 36 36 H 1.09002 * 109.46982 * 334.96485 * 9 8 6 37 37 H 0.97004 * 119.99865 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.47549 * 209.99943 * 18 8 6 39 39 H 1.09004 * 109.47039 * 329.99652 * 18 8 6 40 40 H 1.08987 * 109.47164 * 299.99952 * 19 18 8 41 41 H 1.08992 * 109.46921 * 60.00530 * 19 18 8 42 42 H 1.08997 * 109.50919 * 297.54400 * 21 20 19 43 43 H 1.08999 * 109.50159 * 57.67594 * 21 20 19 44 44 H 1.09008 * 109.50779 * 296.91678 * 22 21 20 45 45 H 1.08998 * 109.54499 * 176.80755 * 22 21 20 46 46 H 1.08997 * 109.51098 * 298.73160 * 24 23 22 47 47 H 1.08998 * 109.54120 * 178.62334 * 24 23 22 48 48 H 1.08999 * 109.50533 * 302.32991 * 25 20 19 49 49 H 1.09005 * 109.50727 * 62.41204 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1721 -1.1517 0.0005 5 6 3.6749 -1.1540 -0.1105 6 6 1.4406 -2.4233 0.1093 7 8 1.2982 -2.9518 1.1953 8 7 0.9236 -2.9998 -0.9937 9 6 0.9992 -2.3108 -2.2844 10 6 2.2122 -2.7900 -3.0393 11 1 2.8616 -3.5337 -2.6018 12 6 2.4929 -2.2789 -4.2887 13 7 1.7023 -1.3729 -4.8213 14 14 3.9969 -2.8724 -5.2243 15 1 4.7167 -3.8862 -4.4123 16 1 3.5715 -3.4803 -6.5107 17 1 4.8976 -1.7231 -5.4939 18 6 0.2860 -4.3156 -0.9021 19 6 -1.2049 -4.1404 -0.6064 20 7 -1.8441 -5.4599 -0.5139 21 6 -1.8304 -6.1443 -1.8151 22 6 -2.4506 -7.5354 -1.6604 23 8 -3.7727 -7.4062 -1.1305 24 6 -3.8230 -6.7447 0.1365 25 6 -3.2167 -5.3455 0.0000 26 1 -0.3633 0.0882 1.0238 27 1 -0.3634 0.8425 -0.5884 28 1 -0.3632 -0.9309 -0.4355 29 1 2.8871 1.3630 -0.8899 30 1 1.5521 2.1336 0.0005 31 1 2.8871 1.3629 0.8900 32 1 3.9617 -1.1072 -1.1610 33 1 4.0795 -0.2892 0.4155 34 1 4.0707 -2.0673 0.3338 35 1 0.1017 -2.5261 -2.8643 36 1 1.0756 -1.2362 -2.1186 37 1 1.9000 -1.0130 -5.7002 38 1 0.4093 -4.8457 -1.8465 39 1 0.7505 -4.8894 -0.1001 40 1 -1.3281 -3.6105 0.3380 41 1 -1.6693 -3.5667 -1.4083 42 1 -2.4081 -5.5664 -2.5364 43 1 -0.8025 -6.2408 -2.1646 44 1 -1.8424 -8.1315 -0.9799 45 1 -2.4947 -8.0252 -2.6331 46 1 -3.2549 -7.3177 0.8691 47 1 -4.8595 -6.6618 0.4636 48 1 -3.2008 -4.8590 0.9753 49 1 -3.8164 -4.7542 -0.6920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751193126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:45 Heat of formation + Delta-G solvation = -68.894057 kcal Electronic energy + Delta-G solvation = -27379.364289 eV Core-core repulsion = 23727.634371 eV Total energy + Delta-G solvation = -3651.729918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.73076 -39.22627 -36.27961 -35.59393 -34.70109 -32.60184 -31.23061 -30.19814 -29.62731 -27.67754 -27.24185 -25.93108 -24.20263 -24.00332 -22.96223 -22.10530 -20.34988 -19.60841 -17.13438 -16.63957 -16.48790 -16.13771 -15.77843 -15.37409 -15.09258 -15.00595 -14.81086 -14.43922 -14.32055 -14.02153 -13.57698 -13.32843 -13.00693 -12.72157 -12.39024 -12.30334 -12.25595 -12.02813 -11.96814 -11.84373 -11.72063 -11.42828 -11.41148 -11.35005 -11.16303 -10.91709 -10.82702 -10.78487 -10.68670 -10.37524 -10.15885 -9.79268 -9.64674 -9.06259 -8.59523 -8.34046 -8.06326 -7.72904 -6.18813 -4.24967 2.39493 3.19236 3.28023 3.30544 3.35810 3.62481 3.83881 4.22930 4.33840 4.85826 5.00259 5.02729 5.12513 5.14812 5.22194 5.26322 5.31781 5.43455 5.52358 5.55852 5.60313 5.64523 5.76612 5.77460 5.83658 5.83996 5.95663 5.96461 5.97197 6.04553 6.18852 6.23745 6.25461 6.30429 6.36595 6.44357 6.57357 6.71219 6.94920 6.99733 7.06139 7.10994 7.19883 7.26780 7.54552 7.74914 8.06383 8.31784 8.78597 8.98790 9.42015 10.88211 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.004729 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.215987 B = 5919.010382 C = 7622.732466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 C -0.109 4.109 4 C -0.135 4.135 5 C -0.099 4.099 6 C 0.561 3.439 7 O -0.569 6.569 8 N -0.590 5.590 9 C 0.236 3.764 10 C -0.531 4.531 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.126 3.874 19 C 0.045 3.955 20 N -0.533 5.533 21 C 0.012 3.988 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 -2.627 6.951 9.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.112 4.112 3 C -0.165 4.165 4 C -0.138 4.138 5 C -0.156 4.156 6 C 0.350 3.650 7 O -0.450 6.450 8 N -0.320 5.320 9 C 0.116 3.884 10 C -0.570 4.570 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.530 5.530 14 Si 0.720 3.280 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.208 1.208 18 C 0.002 3.998 19 C -0.084 4.084 20 N -0.258 5.258 21 C -0.116 4.116 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.019 -3.148 7.548 10.154 hybrid contribution 0.585 0.425 -1.315 1.500 sum -5.434 -2.723 6.233 8.706 Atomic orbital electron populations 1.20906 0.92403 1.02918 1.01365 1.21733 0.95368 0.94020 1.00092 1.20746 0.99709 0.94101 1.01979 1.21056 0.96727 0.92412 1.03634 1.20623 0.90325 1.01583 1.03070 1.18473 0.77962 0.84866 0.83727 1.90708 1.61386 1.65432 1.27513 1.48260 1.54927 1.18586 1.10239 1.19493 0.97335 0.93623 0.77947 1.21483 1.09859 1.24025 1.01597 0.92128 1.24907 0.96735 0.94829 0.97232 1.69934 1.37524 1.28409 1.17107 0.86527 0.82848 0.78811 0.79836 1.19641 1.20928 1.20833 1.21172 0.90649 0.85548 1.02446 1.22500 0.95839 0.88745 1.01284 1.62150 1.17013 1.20785 1.25897 1.22881 1.02500 0.95637 0.90599 1.22682 0.83434 0.95703 0.99397 1.87956 1.28104 1.78683 1.36028 1.22637 1.01020 0.91657 0.85854 1.22760 0.89306 0.97917 1.01030 0.91983 0.91580 0.91616 0.91070 0.92294 0.91752 0.89695 0.91981 0.92483 0.95321 0.93321 0.92679 0.90380 0.90342 0.90580 0.94447 0.93759 0.88862 0.92267 0.88507 0.92300 0.88722 0.89727 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 9.12 36.01 0.33 -1.62 16 2 C -0.11 -1.93 5.27 -101.16 -0.53 -2.46 16 3 C -0.11 -1.53 8.78 36.01 0.32 -1.21 16 4 C -0.14 -2.63 4.32 -102.85 -0.44 -3.07 16 5 C -0.10 -1.74 9.48 36.00 0.34 -1.40 16 6 C 0.56 12.00 5.51 -12.67 -0.07 11.93 16 7 O -0.57 -13.29 16.74 5.27 0.09 -13.21 16 8 N -0.59 -12.40 2.11 -176.46 -0.37 -12.77 16 9 C 0.24 5.51 4.42 -5.20 -0.02 5.49 16 10 C -0.53 -13.51 9.38 -34.44 -0.32 -13.83 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 14 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.13 2.36 5.32 -4.04 -0.02 2.34 16 19 C 0.04 0.75 5.28 -3.82 -0.02 0.73 16 20 N -0.53 -7.76 4.73 -234.31 -1.11 -8.87 16 21 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 22 C 0.06 0.77 7.01 37.21 0.26 1.03 16 23 O -0.39 -5.07 10.83 -35.23 -0.38 -5.45 16 24 C 0.07 0.73 7.01 37.21 0.26 0.99 16 25 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.19 5.72 -51.93 -0.30 0.90 16 29 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 30 H 0.06 0.72 8.00 -51.93 -0.42 0.31 16 31 H 0.06 0.81 7.57 -51.93 -0.39 0.41 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.06 0.90 6.69 -51.93 -0.35 0.56 16 34 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.03 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.05 1.19 5.45 -51.93 -0.28 0.90 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.08 1.46 6.45 -51.93 -0.33 1.13 16 39 H 0.08 1.54 7.50 -51.93 -0.39 1.15 16 40 H 0.08 1.33 8.04 -51.94 -0.42 0.91 16 41 H 0.04 0.65 8.12 -51.93 -0.42 0.22 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.28 6.38 -51.93 -0.33 0.95 16 44 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 49 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -29.47 387.60 -8.94 -38.41 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.66 Total: 3.40 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.07 Total: 0.88 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.74 Total: -45.06 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.29 Total: -18.66 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.47 -8.94 -38.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751193126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.481 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds