Wall clock time and date at job start Fri Apr 10 2020 22:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50705 * 119.99426 * 2 1 4 4 C 1.32994 * 120.00340 * 179.97438 * 2 1 3 5 5 C 1.50693 * 119.99939 * 175.12175 * 4 2 1 6 6 C 1.47103 * 119.99747 * 355.12536 * 4 2 1 7 7 O 1.21609 * 119.99552 * 264.78713 * 6 4 2 8 8 N 1.34771 * 119.99818 * 84.51821 * 6 4 2 9 9 C 1.46500 * 120.00529 * 355.26437 * 8 6 4 10 10 C 1.50693 * 109.47195 * 94.96204 * 9 8 6 11 11 H 1.07998 * 120.00233 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99814 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00066 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46949 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46777 * 119.99988 * 14 12 10 17 17 H 1.48490 * 109.47493 * 240.00074 * 14 12 10 18 18 C 1.46500 * 119.99780 * 175.26694 * 8 6 4 19 19 C 1.53000 * 109.47267 * 89.99555 * 18 8 6 20 20 N 1.46904 * 109.46846 * 180.02562 * 19 18 8 21 21 C 1.47021 * 111.00009 * 293.63336 * 20 19 18 22 22 C 1.53095 * 109.25785 * 177.60944 * 21 20 19 23 23 O 1.43021 * 109.25852 * 56.84987 * 22 21 20 24 24 C 1.43015 * 113.73729 * 301.32935 * 23 22 21 25 25 C 1.47013 * 111.00000 * 170.00258 * 20 19 18 26 26 H 1.08996 * 109.47235 * 274.92491 * 1 2 3 27 27 H 1.08999 * 109.47242 * 34.92850 * 1 2 3 28 28 H 1.09006 * 109.46457 * 154.92941 * 1 2 3 29 29 H 1.08998 * 109.46901 * 239.99622 * 3 2 1 30 30 H 1.08999 * 109.47263 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46730 * 120.00175 * 3 2 1 32 32 H 1.09003 * 109.47112 * 275.10667 * 5 4 2 33 33 H 1.09005 * 109.47569 * 35.10534 * 5 4 2 34 34 H 1.08998 * 109.47373 * 155.10552 * 5 4 2 35 35 H 1.09005 * 109.47170 * 214.96540 * 9 8 6 36 36 H 1.09002 * 109.46982 * 334.96485 * 9 8 6 37 37 H 0.97004 * 119.99865 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.47549 * 209.99943 * 18 8 6 39 39 H 1.09004 * 109.47039 * 329.99652 * 18 8 6 40 40 H 1.08987 * 109.47164 * 299.99952 * 19 18 8 41 41 H 1.08992 * 109.46921 * 60.00530 * 19 18 8 42 42 H 1.08997 * 109.50919 * 297.54400 * 21 20 19 43 43 H 1.08999 * 109.50159 * 57.67594 * 21 20 19 44 44 H 1.09008 * 109.50779 * 296.91678 * 22 21 20 45 45 H 1.08998 * 109.54499 * 176.80755 * 22 21 20 46 46 H 1.08997 * 109.51098 * 298.73160 * 24 23 22 47 47 H 1.08998 * 109.54120 * 178.62334 * 24 23 22 48 48 H 1.08999 * 109.50533 * 302.32991 * 25 20 19 49 49 H 1.09005 * 109.50727 * 62.41204 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1721 -1.1517 0.0005 5 6 3.6749 -1.1540 -0.1105 6 6 1.4406 -2.4233 0.1093 7 8 1.2982 -2.9518 1.1953 8 7 0.9236 -2.9998 -0.9937 9 6 0.9992 -2.3108 -2.2844 10 6 2.2122 -2.7900 -3.0393 11 1 2.8616 -3.5337 -2.6018 12 6 2.4929 -2.2789 -4.2887 13 7 1.7023 -1.3729 -4.8213 14 14 3.9969 -2.8724 -5.2243 15 1 4.7167 -3.8862 -4.4123 16 1 3.5715 -3.4803 -6.5107 17 1 4.8976 -1.7231 -5.4939 18 6 0.2860 -4.3156 -0.9021 19 6 -1.2049 -4.1404 -0.6064 20 7 -1.8441 -5.4599 -0.5139 21 6 -1.8304 -6.1443 -1.8151 22 6 -2.4506 -7.5354 -1.6604 23 8 -3.7727 -7.4062 -1.1305 24 6 -3.8230 -6.7447 0.1365 25 6 -3.2167 -5.3455 0.0000 26 1 -0.3633 0.0882 1.0238 27 1 -0.3634 0.8425 -0.5884 28 1 -0.3632 -0.9309 -0.4355 29 1 2.8871 1.3630 -0.8899 30 1 1.5521 2.1336 0.0005 31 1 2.8871 1.3629 0.8900 32 1 3.9617 -1.1072 -1.1610 33 1 4.0795 -0.2892 0.4155 34 1 4.0707 -2.0673 0.3338 35 1 0.1017 -2.5261 -2.8643 36 1 1.0756 -1.2362 -2.1186 37 1 1.9000 -1.0130 -5.7002 38 1 0.4093 -4.8457 -1.8465 39 1 0.7505 -4.8894 -0.1001 40 1 -1.3281 -3.6105 0.3380 41 1 -1.6693 -3.5667 -1.4083 42 1 -2.4081 -5.5664 -2.5364 43 1 -0.8025 -6.2408 -2.1646 44 1 -1.8424 -8.1315 -0.9799 45 1 -2.4947 -8.0252 -2.6331 46 1 -3.2549 -7.3177 0.8691 47 1 -4.8595 -6.6618 0.4636 48 1 -3.2008 -4.8590 0.9753 49 1 -3.8164 -4.7542 -0.6920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751193126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:45 Heat of formation + Delta-G solvation = -86.630028 kcal Electronic energy + Delta-G solvation = -27380.133378 eV Core-core repulsion = 23727.634371 eV Total energy + Delta-G solvation = -3652.499008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20906 -40.44950 -37.57381 -37.09233 -36.26746 -34.52836 -32.24169 -31.58354 -31.03083 -29.14216 -28.81654 -27.23507 -25.61452 -25.05955 -24.83665 -23.45137 -21.44192 -21.13736 -18.84054 -18.43280 -17.88100 -17.28669 -17.17199 -16.77124 -16.47564 -16.28800 -16.07990 -15.97974 -15.59137 -15.31179 -14.94142 -14.62563 -14.54345 -14.19717 -14.10856 -13.68308 -13.51000 -13.40129 -13.33606 -13.16708 -13.13854 -12.99527 -12.84956 -12.64850 -12.52540 -12.47487 -12.34776 -12.15843 -12.08926 -11.91684 -11.68415 -11.47440 -10.77836 -10.72162 -10.56625 -9.64097 -9.49005 -9.38947 -8.19061 -6.32005 0.97399 1.39260 1.43115 1.52912 1.67191 2.20530 2.42454 2.82623 2.96743 3.12028 3.66798 3.82086 3.89539 3.95325 4.00670 4.05971 4.16560 4.19859 4.29513 4.35639 4.40495 4.49592 4.55506 4.62988 4.68352 4.70854 4.72017 4.78140 4.78769 4.82250 4.89235 4.92402 4.95920 4.97941 4.99345 5.01928 5.09325 5.18726 5.23687 5.58630 5.67670 5.73892 5.86664 5.88745 5.89155 6.07911 6.14105 6.53848 6.80566 7.25511 7.40546 8.87267 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.004729 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.215987 B = 5919.010382 C = 7622.732466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 C -0.108 4.108 4 C -0.179 4.179 5 C -0.090 4.090 6 C 0.560 3.440 7 O -0.595 6.595 8 N -0.592 5.592 9 C 0.257 3.743 10 C -0.538 4.538 11 H 0.050 0.950 12 C 0.026 3.974 13 N -0.919 5.919 14 Si 0.951 3.049 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.276 1.276 18 C 0.128 3.872 19 C 0.063 3.937 20 N -0.538 5.538 21 C 0.011 3.989 22 C 0.069 3.931 23 O -0.402 6.402 24 C 0.067 3.933 25 C 0.016 3.984 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.009 0.991 36 H 0.040 0.960 37 H 0.267 0.733 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.033 0.967 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.121 0.879 48 H 0.093 0.907 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -2.276 7.243 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 C -0.164 4.164 4 C -0.181 4.181 5 C -0.147 4.147 6 C 0.350 3.650 7 O -0.478 6.478 8 N -0.321 5.321 9 C 0.137 3.863 10 C -0.576 4.576 11 H 0.068 0.932 12 C -0.174 4.174 13 N -0.558 5.558 14 Si 0.777 3.223 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.202 1.202 18 C 0.004 3.996 19 C -0.066 4.066 20 N -0.264 5.264 21 C -0.117 4.117 22 C -0.008 4.008 23 O -0.321 6.321 24 C -0.010 4.010 25 C -0.112 4.112 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.082 0.918 47 H 0.139 0.861 48 H 0.111 0.889 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.992 -2.809 7.843 10.261 hybrid contribution 0.504 0.338 -1.373 1.501 sum -5.488 -2.471 6.470 8.837 Atomic orbital electron populations 1.20966 0.92072 1.02388 1.02453 1.22232 0.96012 0.94925 0.96724 1.20827 1.00136 0.92676 1.02767 1.21188 0.97640 0.92031 1.07266 1.20558 0.89337 1.02581 1.02244 1.18871 0.77517 0.85475 0.83144 1.90671 1.62441 1.66462 1.28199 1.48239 1.55199 1.19088 1.09563 1.19073 0.95696 0.93163 0.78396 1.21602 1.10223 1.23774 1.02025 0.93193 1.25553 0.99101 0.94843 0.97906 1.70017 1.38940 1.29303 1.17557 0.85606 0.79805 0.78413 0.78479 1.19589 1.20586 1.20164 1.21198 0.91949 0.84569 1.01866 1.22187 0.94390 0.89842 1.00178 1.62166 1.18443 1.19271 1.26483 1.22920 1.02235 0.96671 0.89849 1.22737 0.83073 0.94366 1.00627 1.87943 1.28531 1.78780 1.36832 1.22780 1.02546 0.90331 0.85331 1.22874 0.87908 0.99248 1.01133 0.90405 0.89731 0.94070 0.91312 0.90179 0.89652 0.91436 0.88886 0.93376 0.97289 0.94194 0.92428 0.90676 0.91257 0.91488 0.95553 0.94837 0.89438 0.91631 0.86639 0.91767 0.86147 0.88885 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 9.12 71.24 0.65 -3.24 16 2 C -0.10 -3.28 5.27 -17.61 -0.09 -3.37 16 3 C -0.11 -2.74 8.78 71.24 0.63 -2.11 16 4 C -0.18 -6.92 4.32 -18.71 -0.08 -7.00 16 5 C -0.09 -3.13 9.48 71.23 0.68 -2.46 16 6 C 0.56 24.50 5.51 86.57 0.48 24.97 16 7 O -0.59 -28.37 16.74 -4.06 -0.07 -28.43 16 8 N -0.59 -25.70 2.11 -830.45 -1.75 -27.45 16 9 C 0.26 12.38 4.42 85.63 0.38 12.76 16 10 C -0.54 -27.80 9.38 25.60 0.24 -27.56 16 11 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 12 C 0.03 1.36 5.46 84.65 0.46 1.82 16 13 N -0.92 -49.93 13.29 21.45 0.28 -49.65 16 14 Si 0.95 41.31 29.54 68.60 2.03 43.34 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 18 C 0.13 4.98 5.32 86.38 0.46 5.44 16 19 C 0.06 2.17 5.28 86.30 0.46 2.62 16 20 N -0.54 -15.75 4.73 -895.22 -4.23 -19.98 16 21 C 0.01 0.31 5.44 86.31 0.47 0.78 16 22 C 0.07 1.55 7.01 72.01 0.50 2.06 16 23 O -0.40 -9.85 10.83 -148.98 -1.61 -11.46 16 24 C 0.07 1.37 7.01 72.01 0.50 1.88 16 25 C 0.02 0.40 5.64 86.31 0.49 0.89 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.04 1.51 5.72 -2.38 -0.01 1.49 16 29 H 0.07 1.83 8.03 -2.39 -0.02 1.81 16 30 H 0.08 1.70 8.00 -2.39 -0.02 1.68 16 31 H 0.08 1.85 7.57 -2.39 -0.02 1.83 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.09 2.55 6.69 -2.38 -0.02 2.53 16 34 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 35 H 0.01 0.47 8.11 -2.38 -0.02 0.45 16 36 H 0.04 2.00 5.45 -2.39 -0.01 1.98 16 37 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.07 2.93 6.45 -2.39 -0.02 2.92 16 39 H 0.07 2.82 7.50 -2.39 -0.02 2.81 16 40 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 41 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 2.45 6.38 -2.39 -0.02 2.44 16 44 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.09 2.09 8.09 -2.39 -0.02 2.07 16 49 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -63.05 387.60 1.77 -61.27 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.91 Total: 24.88 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.22 Total: 7.48 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -5.70 Total: -97.08 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.68 Total: -39.89 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -63.05 1.77 -61.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751193126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.355 kcal (2) G-P(sol) polarization free energy of solvation -63.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds