Wall clock time and date at job start Fri Apr 10 2020 22:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46764 * 2 1 4 4 C 1.53002 * 109.46971 * 119.99700 * 2 1 3 5 5 N 1.46895 * 109.46883 * 62.68619 * 4 2 1 6 6 C 1.46907 * 110.99836 * 196.53628 * 5 4 2 7 7 C 1.50704 * 109.46705 * 66.05144 * 6 5 4 8 8 H 1.07999 * 120.00061 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99882 * 179.97438 * 7 6 5 10 10 N 1.31523 * 120.00042 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00192 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47011 * 89.99826 * 11 9 7 13 13 H 1.48504 * 109.47072 * 209.99891 * 11 9 7 14 14 H 1.48500 * 109.46929 * 330.00011 * 11 9 7 15 15 C 1.46897 * 110.99871 * 72.59151 * 5 4 2 16 16 N 1.46501 * 109.47121 * 208.39698 * 15 5 4 17 17 C 1.47111 * 124.34482 * 260.84852 * 16 15 5 18 18 C 1.53220 * 105.07032 * 164.15810 * 17 16 15 19 19 C 1.53409 * 111.67956 * 144.44884 * 18 17 16 20 20 C 1.55313 * 101.70698 * 102.47418 * 19 18 17 21 21 O 1.44515 * 103.68757 * 35.86317 * 20 19 18 22 22 C 1.44163 * 107.04993 * 320.82430 * 21 20 19 23 23 C 1.53188 * 103.26843 * 24.21325 * 18 17 16 24 24 C 1.34598 * 124.35053 * 81.14407 * 16 15 5 25 25 O 1.21287 * 124.94000 * 0.32351 * 24 16 15 26 26 H 1.09001 * 109.46630 * 60.00280 * 1 2 3 27 27 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47493 * 300.00146 * 1 2 3 29 29 H 1.09000 * 109.47493 * 239.99854 * 2 1 3 30 30 H 1.09001 * 109.46947 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47188 * 299.99838 * 3 2 1 32 32 H 1.09000 * 109.47234 * 59.99696 * 3 2 1 33 33 H 1.09008 * 109.46539 * 302.68858 * 4 2 1 34 34 H 1.08994 * 109.47011 * 182.69298 * 4 2 1 35 35 H 1.08997 * 109.46825 * 186.04760 * 6 5 4 36 36 H 1.08997 * 109.46909 * 306.05383 * 6 5 4 37 37 H 0.96993 * 120.00072 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.46970 * 328.38977 * 15 5 4 39 39 H 1.08993 * 109.47603 * 88.39074 * 15 5 4 40 40 H 1.09005 * 110.30439 * 283.20407 * 17 16 15 41 41 H 1.08994 * 110.31119 * 45.36629 * 17 16 15 42 42 H 1.08993 * 110.98164 * 220.58258 * 19 18 17 43 43 H 1.08997 * 110.97688 * 344.37387 * 19 18 17 44 44 H 1.08995 * 110.58239 * 277.30998 * 20 19 18 45 45 H 1.09004 * 110.70922 * 154.47225 * 20 19 18 46 46 H 1.08992 * 110.00707 * 266.81212 * 22 21 20 47 47 H 1.09000 * 110.04562 * 145.46356 * 22 21 20 48 48 H 1.09000 * 110.55263 * 217.87987 * 23 18 17 49 49 H 1.09001 * 110.55037 * 95.06931 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6040 -2.1236 1.2173 6 6 1.7235 -2.7424 2.5443 7 6 0.7535 -2.0870 3.4933 8 1 0.1121 -1.2908 3.1454 9 6 0.6841 -2.5046 4.8055 10 7 1.4641 -3.4753 5.2288 11 14 -0.5177 -1.6918 5.9820 12 1 -1.8141 -2.4151 5.9433 13 1 0.0327 -1.7358 7.3606 14 1 -0.7272 -0.2784 5.5775 15 6 2.3559 -2.8858 0.2115 16 7 1.5289 -3.9888 -0.2841 17 6 1.6363 -5.3804 0.1807 18 6 0.3484 -6.0601 -0.2957 19 6 0.5950 -7.5177 -0.7057 20 6 0.0448 -8.2887 0.5252 21 8 -1.0906 -7.4988 0.9439 22 6 -0.7207 -6.1137 0.7932 23 6 -0.0827 -5.2001 -1.4879 24 6 0.5772 -3.8603 -1.2271 25 8 0.2891 -2.8234 -1.7865 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6378 -0.2358 2.1386 34 1 3.1289 -0.6796 1.2738 35 1 1.4974 -3.8061 2.4708 36 1 2.7398 -2.6118 2.9159 37 1 1.4156 -3.7689 6.1520 38 1 2.6214 -2.2299 -0.6177 39 1 3.2635 -3.2864 0.6628 40 1 2.5077 -5.8615 -0.2637 41 1 1.6993 -5.4123 1.2684 42 1 0.0352 -7.7698 -1.6063 43 1 1.6591 -7.7097 -0.8428 44 1 0.7937 -8.3324 1.3160 45 1 -0.2705 -9.2928 0.2417 46 1 -0.3174 -5.7313 1.7308 47 1 -1.5881 -5.5258 0.4933 48 1 -1.1673 -5.0942 -1.5110 49 1 0.2806 -5.6302 -2.4212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756850071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:48 Heat of formation + Delta-G solvation = -76.554765 kcal Electronic energy + Delta-G solvation = -28077.547849 eV Core-core repulsion = 24425.485738 eV Total energy + Delta-G solvation = -3652.062111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89067 -38.63852 -37.28158 -35.76174 -34.06238 -32.89263 -31.81505 -29.96961 -27.86923 -27.49432 -26.53647 -26.16776 -24.85325 -23.57429 -22.68745 -21.04578 -19.86866 -19.58194 -18.83904 -16.58160 -16.54348 -16.15800 -15.80625 -15.49897 -15.12376 -14.89694 -14.52808 -14.47063 -14.00157 -13.78237 -13.52960 -13.48479 -13.01416 -12.80856 -12.45072 -12.29689 -12.18510 -11.96274 -11.81711 -11.74636 -11.69894 -11.37408 -11.25533 -11.10834 -10.87722 -10.81484 -10.71320 -10.65384 -10.34467 -10.22801 -9.93657 -9.70160 -9.56171 -9.42230 -9.22909 -8.51348 -8.34033 -7.30499 -6.06985 -4.07278 2.94709 3.30413 3.36849 3.39099 3.40684 3.92519 4.21622 4.30973 4.40393 4.58398 4.83684 4.96519 4.98239 5.13024 5.29254 5.38223 5.42096 5.46690 5.50835 5.53303 5.56052 5.65074 5.70098 5.73717 5.76434 5.81663 5.82002 5.91429 6.00136 6.03711 6.11399 6.18335 6.27924 6.38939 6.51706 6.56902 6.68860 6.82739 6.89412 6.99502 7.16039 7.23466 7.27156 7.51314 7.78215 8.02971 8.16995 8.48548 8.60586 9.00726 9.57316 11.03544 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.006228 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.164930 B = 4494.883397 C = 6574.464637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 C -0.144 4.144 4 C 0.074 3.926 5 N -0.544 5.544 6 C 0.197 3.803 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.290 3.710 16 N -0.601 5.601 17 C 0.115 3.885 18 C -0.106 4.106 19 C -0.138 4.138 20 C 0.045 3.955 21 O -0.379 6.379 22 C 0.062 3.938 23 C -0.140 4.140 24 C 0.523 3.477 25 O -0.526 6.526 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.017 0.983 35 H 0.028 0.972 36 H -0.011 1.011 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -6.052 -12.332 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.054 4.054 5 N -0.270 5.270 6 C 0.072 3.928 7 C -0.542 4.542 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.199 1.199 15 C 0.078 3.922 16 N -0.336 5.336 17 C -0.009 4.009 18 C -0.106 4.106 19 C -0.176 4.176 20 C -0.031 4.031 21 O -0.298 6.298 22 C -0.014 4.014 23 C -0.180 4.180 24 C 0.309 3.691 25 O -0.402 6.402 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.007 0.993 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.120 0.880 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.302 -5.611 -12.472 13.738 hybrid contribution 0.484 0.353 1.091 1.245 sum 1.786 -5.258 -11.381 12.663 Atomic orbital electron populations 1.21562 0.94571 1.02940 0.99109 1.21118 0.97128 0.94517 0.98181 1.21817 1.00171 0.96973 1.01255 1.21988 0.95946 0.88846 0.98615 1.61750 1.55084 1.01569 1.08555 1.19759 0.95454 0.94846 0.82771 1.21141 1.20392 1.19060 0.93640 0.91836 1.24948 0.95997 0.95231 0.98223 1.69940 1.38930 1.28261 1.16710 0.86553 0.81251 0.79912 0.80060 1.20642 1.21369 1.19867 1.21702 0.88690 0.86775 0.95022 1.48472 1.37779 1.08219 1.39124 1.22168 0.95884 0.81464 1.01371 1.21905 0.96517 0.95823 0.96400 1.23038 1.02482 0.92680 0.99397 1.23604 0.89043 0.95513 0.94972 1.88959 1.36522 1.16700 1.87629 1.23176 0.97194 0.83266 0.97766 1.22317 1.02850 0.94271 0.98549 1.20758 0.79378 0.89855 0.79065 1.90690 1.64551 1.32330 1.52622 0.94814 0.90909 0.93863 0.91990 0.93453 0.93266 0.92810 0.89344 0.96437 0.95384 0.99322 0.92986 0.90315 0.93284 0.91137 0.89336 0.89869 0.89640 0.91896 0.89176 0.90353 0.89351 0.88003 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.06 37.16 0.34 -1.94 16 2 C -0.09 -1.55 2.92 -90.61 -0.26 -1.81 16 3 C -0.14 -2.07 9.19 37.16 0.34 -1.73 16 4 C 0.07 1.43 4.17 -3.83 -0.02 1.41 16 5 N -0.54 -11.18 3.90 -239.98 -0.94 -12.12 16 6 C 0.20 4.79 4.56 -4.97 -0.02 4.76 16 7 C -0.50 -13.61 8.27 -34.44 -0.28 -13.90 16 8 H 0.06 1.75 7.26 -52.49 -0.38 1.37 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 11 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.29 5.07 5.50 -63.32 -0.35 4.72 16 16 N -0.60 -9.66 3.19 -176.22 -0.56 -10.22 16 17 C 0.11 1.53 6.43 -3.60 -0.02 1.50 16 18 C -0.11 -1.26 0.85 -154.24 -0.13 -1.39 16 19 C -0.14 -1.25 6.23 -25.29 -0.16 -1.40 16 20 C 0.05 0.48 7.74 38.38 0.30 0.77 16 21 O -0.38 -5.49 11.55 -35.23 -0.41 -5.89 16 22 C 0.06 0.91 7.11 37.00 0.26 1.17 16 23 C -0.14 -1.72 5.91 -27.34 -0.16 -1.88 16 24 C 0.52 8.64 8.05 -10.62 -0.09 8.56 16 25 O -0.53 -10.43 17.28 5.55 0.10 -10.33 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.54 7.24 -51.93 -0.38 1.16 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.09 6.56 -51.93 -0.34 0.75 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.90 6.59 -51.92 -0.34 1.55 16 34 H 0.02 0.32 8.04 -51.93 -0.42 -0.10 16 35 H 0.03 0.72 6.57 -51.93 -0.34 0.38 16 36 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.08 1.35 6.19 -51.93 -0.32 1.02 16 39 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 40 H 0.07 0.76 7.50 -51.93 -0.39 0.37 16 41 H 0.09 1.38 6.06 -51.93 -0.31 1.07 16 42 H 0.08 0.66 7.88 -51.93 -0.41 0.25 16 43 H 0.09 0.63 7.46 -51.93 -0.39 0.24 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.35 7.37 -51.93 -0.38 0.97 16 47 H 0.09 1.30 7.36 -51.93 -0.38 0.92 16 48 H 0.10 1.24 7.47 -51.93 -0.39 0.85 16 49 H 0.10 1.01 7.86 -51.93 -0.41 0.60 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -30.93 380.18 -9.22 -40.15 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.50 Total: 0.84 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.35 Total: 0.32 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.76 Total: -47.28 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.31 Total: -16.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.93 -9.22 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756850071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.404 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds