Wall clock time and date at job start Fri Apr 10 2020 22:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46832 * 2 1 4 4 C 1.52998 * 109.47692 * 119.99989 * 2 1 3 5 5 N 1.46898 * 109.47233 * 172.60279 * 4 2 1 6 6 C 1.46902 * 110.99935 * 152.00452 * 5 4 2 7 7 C 1.50700 * 109.47129 * 280.68445 * 6 5 4 8 8 H 1.08004 * 119.99700 * 4.62168 * 7 6 5 9 9 C 1.37876 * 120.00377 * 184.61891 * 7 6 5 10 10 N 1.31514 * 119.99503 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00333 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47484 * 90.00027 * 11 9 7 13 13 H 1.48497 * 109.47382 * 209.99922 * 11 9 7 14 14 H 1.48500 * 109.47381 * 329.99861 * 11 9 7 15 15 C 1.46899 * 111.00296 * 275.96035 * 5 4 2 16 16 N 1.46501 * 109.47357 * 83.90033 * 15 5 4 17 17 C 1.47111 * 124.34853 * 74.32500 * 16 15 5 18 18 C 1.53040 * 105.15094 * 195.70724 * 17 16 15 19 19 C 1.53074 * 112.05207 * 215.39370 * 18 17 16 20 20 C 1.54845 * 103.51679 * 237.35198 * 19 18 17 21 21 O 1.44555 * 104.87074 * 23.71160 * 20 19 18 22 22 C 1.44783 * 105.54043 * 320.43787 * 21 20 19 23 23 C 1.53177 * 103.35771 * 336.15054 * 18 17 16 24 24 C 1.34593 * 124.34343 * 254.02802 * 16 15 5 25 25 O 1.21281 * 124.94727 * 359.61677 * 24 16 15 26 26 H 1.08998 * 109.47105 * 299.99217 * 1 2 3 27 27 H 1.08995 * 109.47814 * 59.99665 * 1 2 3 28 28 H 1.09004 * 109.46465 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47105 * 240.00783 * 2 1 3 30 30 H 1.09000 * 109.46954 * 184.73019 * 3 2 1 31 31 H 1.08997 * 109.47439 * 304.72792 * 3 2 1 32 32 H 1.08997 * 109.47033 * 64.72893 * 3 2 1 33 33 H 1.09000 * 109.46516 * 52.60720 * 4 2 1 34 34 H 1.08999 * 109.47265 * 292.60504 * 4 2 1 35 35 H 1.08999 * 109.47083 * 40.68269 * 6 5 4 36 36 H 1.09003 * 109.47368 * 160.68980 * 6 5 4 37 37 H 0.96998 * 119.99708 * 180.02562 * 10 9 7 38 38 H 1.09007 * 109.46976 * 203.89779 * 15 5 4 39 39 H 1.08999 * 109.47328 * 323.89567 * 15 5 4 40 40 H 1.09002 * 110.30800 * 314.61972 * 17 16 15 41 41 H 1.08993 * 110.30769 * 76.69233 * 17 16 15 42 42 H 1.09003 * 110.61044 * 355.85730 * 19 18 17 43 43 H 1.08997 * 110.61715 * 118.69037 * 19 18 17 44 44 H 1.08999 * 110.35999 * 142.55709 * 20 19 18 45 45 H 1.09003 * 110.36029 * 264.75879 * 20 19 18 46 46 H 1.08996 * 110.43473 * 280.36371 * 22 21 20 47 47 H 1.08997 * 110.43978 * 157.85006 * 22 21 20 48 48 H 1.08998 * 110.55202 * 141.89649 * 23 18 17 49 49 H 1.09006 * 110.54502 * 264.55834 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4982 -0.8775 1.1632 6 6 4.1022 -0.9267 2.5015 7 6 4.2181 0.4713 3.0520 8 1 3.8098 1.3048 2.4996 9 6 4.8451 0.6864 4.2610 10 7 5.3426 -0.3284 4.9334 11 14 4.9881 2.4192 4.9437 12 1 3.8032 2.7183 5.7875 13 1 6.2205 2.5276 5.7650 14 1 5.0543 3.3896 3.8215 15 6 3.8549 -2.0684 0.3806 16 7 3.8447 -1.7361 -1.0462 17 6 4.8828 -0.9415 -1.7208 18 6 4.2629 -0.5253 -3.0568 19 6 5.2978 -0.4895 -4.1842 20 6 5.2111 0.9647 -4.7090 21 8 4.6788 1.7273 -3.6023 22 6 3.6679 0.8836 -3.0004 23 6 3.1901 -1.5920 -3.2967 24 6 2.8873 -2.1235 -1.9093 25 8 1.9218 -2.7976 -1.6190 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1266 1.4438 -0.0847 31 1 1.6091 1.9803 -0.8446 32 1 1.7474 1.9313 0.9293 33 1 1.5728 -1.7036 1.3177 34 1 1.7889 -0.1367 2.1343 35 1 3.4750 -1.5262 3.1613 36 1 5.0937 -1.3748 2.4364 37 1 5.7834 -0.1772 5.7841 38 1 4.8504 -2.4070 0.6677 39 1 3.1317 -2.8605 0.5744 40 1 5.1301 -0.0609 -1.1280 41 1 5.7737 -1.5468 -1.8878 42 1 6.2948 -0.6988 -3.7966 43 1 5.0354 -1.1993 -4.9686 44 1 6.2018 1.3299 -4.9795 45 1 4.5403 1.0191 -5.5665 46 1 2.7427 0.9292 -3.5749 47 1 3.4902 1.1806 -1.9668 48 1 2.3003 -1.1465 -3.7414 49 1 3.5773 -2.3876 -3.9333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756850075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:50 Heat of formation + Delta-G solvation = -73.089487 kcal Electronic energy + Delta-G solvation = -28467.971686 eV Core-core repulsion = 24816.059841 eV Total energy + Delta-G solvation = -3651.911846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12647 -38.86663 -37.16234 -35.87387 -34.18461 -32.99361 -31.95340 -30.00159 -28.09212 -27.35732 -26.65497 -26.37224 -25.07211 -23.46135 -22.75716 -20.87932 -20.02597 -19.71893 -19.17570 -16.82773 -16.42867 -16.27628 -15.86865 -15.49817 -15.36287 -15.04198 -14.69730 -14.43235 -14.13800 -13.85507 -13.60663 -13.51546 -13.25667 -12.76773 -12.51577 -12.39122 -12.31224 -12.12241 -11.89977 -11.76817 -11.54403 -11.48905 -11.40711 -11.03119 -10.89699 -10.87428 -10.77249 -10.69901 -10.33548 -10.24785 -9.93440 -9.84315 -9.78758 -9.60376 -9.30621 -8.52356 -8.41003 -7.38243 -6.04216 -4.05259 2.73839 3.27520 3.31175 3.37805 3.42266 3.77867 4.13366 4.20642 4.41621 4.46943 4.70105 4.86615 4.88079 4.92624 5.24704 5.31620 5.38698 5.41779 5.44098 5.45087 5.50517 5.53000 5.57946 5.68095 5.70555 5.74450 5.75875 5.87816 5.93172 6.01244 6.02141 6.11458 6.27365 6.34189 6.45834 6.51376 6.60871 6.64480 6.69339 6.89963 6.96381 7.11307 7.26936 7.40404 7.80865 8.04371 8.14772 8.36846 8.50250 9.02712 9.59147 11.06013 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.004829 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.130901 B = 5797.095372 C = 6343.824050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.134 4.134 4 C 0.071 3.929 5 N -0.545 5.545 6 C 0.199 3.801 7 C -0.500 4.500 8 H 0.065 0.935 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.284 3.716 16 N -0.599 5.599 17 C 0.121 3.879 18 C -0.107 4.107 19 C -0.139 4.139 20 C 0.044 3.956 21 O -0.371 6.371 22 C 0.053 3.947 23 C -0.143 4.143 24 C 0.517 3.483 25 O -0.538 6.538 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.077 0.923 35 H -0.007 1.007 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 -0.770 -18.844 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.191 4.191 4 C -0.057 4.057 5 N -0.270 5.270 6 C 0.074 3.926 7 C -0.538 4.538 8 H 0.083 0.917 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.198 1.198 15 C 0.073 3.927 16 N -0.334 5.334 17 C -0.002 4.002 18 C -0.108 4.108 19 C -0.177 4.177 20 C -0.033 4.033 21 O -0.289 6.289 22 C -0.023 4.023 23 C -0.183 4.183 24 C 0.304 3.696 25 O -0.415 6.415 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.011 0.989 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.129 0.871 48 H 0.118 0.882 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.648 -0.570 -18.571 18.652 hybrid contribution -0.168 -0.009 0.842 0.859 sum -1.816 -0.578 -17.728 17.831 Atomic orbital electron populations 1.21793 0.96395 1.01100 1.00865 1.21197 0.94007 0.96802 0.99005 1.21747 1.01907 0.95216 1.00227 1.22114 0.87658 0.98103 0.97818 1.61705 1.09473 1.36662 1.19189 1.19739 0.93824 0.97742 0.81316 1.21139 1.36110 0.92920 1.03671 0.91694 1.24967 0.95646 0.97020 0.96939 1.69949 1.38786 1.30278 1.15000 0.86530 0.77383 0.84735 0.78976 1.20819 1.21361 1.19756 1.21956 1.01128 0.91719 0.77884 1.48651 1.23618 1.52359 1.08741 1.21981 0.90287 0.96730 0.91191 1.21897 0.96171 0.96416 0.96306 1.22869 0.99572 0.98057 0.97185 1.23478 0.99515 0.90262 0.90085 1.89242 1.54414 1.40028 1.45260 1.23590 0.90797 0.87163 1.00747 1.22353 1.00151 0.99082 0.96714 1.20792 0.81882 0.79484 0.87440 1.90719 1.29172 1.39703 1.81909 0.93026 0.93499 0.93184 0.91579 0.91421 0.94639 0.92968 0.95805 0.90467 0.98880 0.95106 0.92960 0.90012 0.92334 0.88669 0.91161 0.89748 0.89903 0.89096 0.92395 0.92046 0.87125 0.88157 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 2 C -0.09 -1.52 2.98 -90.62 -0.27 -1.79 16 3 C -0.13 -2.19 7.81 37.16 0.29 -1.90 16 4 C 0.07 1.38 4.22 -3.83 -0.02 1.37 16 5 N -0.54 -10.94 4.04 -239.98 -0.97 -11.91 16 6 C 0.20 4.86 4.69 -4.97 -0.02 4.84 16 7 C -0.50 -13.37 8.74 -34.44 -0.30 -13.68 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 11 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.28 5.02 5.92 -63.32 -0.37 4.65 16 16 N -0.60 -8.95 2.47 -176.32 -0.44 -9.39 16 17 C 0.12 1.51 6.38 -3.69 -0.02 1.49 16 18 C -0.11 -1.09 0.92 -154.33 -0.14 -1.23 16 19 C -0.14 -1.07 6.38 -25.72 -0.16 -1.23 16 20 C 0.04 0.37 7.67 38.13 0.29 0.66 16 21 O -0.37 -4.57 11.66 -35.23 -0.41 -4.98 16 22 C 0.05 0.62 6.76 37.18 0.25 0.87 16 23 C -0.14 -1.50 5.98 -27.34 -0.16 -1.67 16 24 C 0.52 7.75 5.61 -10.61 -0.06 7.69 16 25 O -0.54 -10.04 17.14 5.56 0.10 -9.94 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.11 4.04 -51.93 -0.21 0.90 16 30 H 0.07 1.20 6.81 -51.93 -0.35 0.85 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.02 0.48 7.45 -51.93 -0.39 0.09 16 34 H 0.08 1.65 7.38 -51.93 -0.38 1.26 16 35 H -0.01 -0.18 7.95 -51.93 -0.41 -0.59 16 36 H 0.03 0.80 7.44 -51.93 -0.39 0.41 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.08 1.41 7.39 -51.92 -0.38 1.03 16 39 H 0.06 1.10 6.95 -51.93 -0.36 0.74 16 40 H 0.10 1.38 7.72 -51.93 -0.40 0.98 16 41 H 0.07 0.76 7.62 -51.93 -0.40 0.37 16 42 H 0.08 0.61 7.51 -51.93 -0.39 0.22 16 43 H 0.08 0.49 7.49 -51.93 -0.39 0.10 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.64 7.53 -51.93 -0.39 0.25 16 47 H 0.11 1.50 5.05 -51.93 -0.26 1.24 16 48 H 0.10 0.98 7.50 -51.93 -0.39 0.59 16 49 H 0.10 0.89 7.61 -51.93 -0.40 0.49 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -30.61 374.70 -9.21 -39.82 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.39 Total: 0.07 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.46 Total: -0.34 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.67 Total: -46.59 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.32 Total: -14.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.61 -9.21 -39.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756850075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.269 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds