Wall clock time and date at job start Fri Apr 10 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46832 * 2 1 4 4 C 1.52998 * 109.47692 * 119.99989 * 2 1 3 5 5 N 1.46898 * 109.47233 * 172.60279 * 4 2 1 6 6 C 1.46902 * 110.99935 * 152.00452 * 5 4 2 7 7 C 1.50700 * 109.47129 * 280.68445 * 6 5 4 8 8 H 1.08004 * 119.99700 * 4.62168 * 7 6 5 9 9 C 1.37876 * 120.00377 * 184.61891 * 7 6 5 10 10 N 1.31514 * 119.99503 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00333 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47484 * 90.00027 * 11 9 7 13 13 H 1.48497 * 109.47382 * 209.99922 * 11 9 7 14 14 H 1.48500 * 109.47381 * 329.99861 * 11 9 7 15 15 C 1.46899 * 111.00296 * 275.96035 * 5 4 2 16 16 N 1.46501 * 109.47357 * 83.90033 * 15 5 4 17 17 C 1.47111 * 124.34853 * 74.32500 * 16 15 5 18 18 C 1.53040 * 105.15094 * 195.70724 * 17 16 15 19 19 C 1.53074 * 112.05207 * 215.39370 * 18 17 16 20 20 C 1.54845 * 103.51679 * 237.35198 * 19 18 17 21 21 O 1.44555 * 104.87074 * 23.71160 * 20 19 18 22 22 C 1.44783 * 105.54043 * 320.43787 * 21 20 19 23 23 C 1.53177 * 103.35771 * 336.15054 * 18 17 16 24 24 C 1.34593 * 124.34343 * 254.02802 * 16 15 5 25 25 O 1.21281 * 124.94727 * 359.61677 * 24 16 15 26 26 H 1.08998 * 109.47105 * 299.99217 * 1 2 3 27 27 H 1.08995 * 109.47814 * 59.99665 * 1 2 3 28 28 H 1.09004 * 109.46465 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47105 * 240.00783 * 2 1 3 30 30 H 1.09000 * 109.46954 * 184.73019 * 3 2 1 31 31 H 1.08997 * 109.47439 * 304.72792 * 3 2 1 32 32 H 1.08997 * 109.47033 * 64.72893 * 3 2 1 33 33 H 1.09000 * 109.46516 * 52.60720 * 4 2 1 34 34 H 1.08999 * 109.47265 * 292.60504 * 4 2 1 35 35 H 1.08999 * 109.47083 * 40.68269 * 6 5 4 36 36 H 1.09003 * 109.47368 * 160.68980 * 6 5 4 37 37 H 0.96998 * 119.99708 * 180.02562 * 10 9 7 38 38 H 1.09007 * 109.46976 * 203.89779 * 15 5 4 39 39 H 1.08999 * 109.47328 * 323.89567 * 15 5 4 40 40 H 1.09002 * 110.30800 * 314.61972 * 17 16 15 41 41 H 1.08993 * 110.30769 * 76.69233 * 17 16 15 42 42 H 1.09003 * 110.61044 * 355.85730 * 19 18 17 43 43 H 1.08997 * 110.61715 * 118.69037 * 19 18 17 44 44 H 1.08999 * 110.35999 * 142.55709 * 20 19 18 45 45 H 1.09003 * 110.36029 * 264.75879 * 20 19 18 46 46 H 1.08996 * 110.43473 * 280.36371 * 22 21 20 47 47 H 1.08997 * 110.43978 * 157.85006 * 22 21 20 48 48 H 1.08998 * 110.55202 * 141.89649 * 23 18 17 49 49 H 1.09006 * 110.54502 * 264.55834 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4982 -0.8775 1.1632 6 6 4.1022 -0.9267 2.5015 7 6 4.2181 0.4713 3.0520 8 1 3.8098 1.3048 2.4996 9 6 4.8451 0.6864 4.2610 10 7 5.3426 -0.3284 4.9334 11 14 4.9881 2.4192 4.9437 12 1 3.8032 2.7183 5.7875 13 1 6.2205 2.5276 5.7650 14 1 5.0543 3.3896 3.8215 15 6 3.8549 -2.0684 0.3806 16 7 3.8447 -1.7361 -1.0462 17 6 4.8828 -0.9415 -1.7208 18 6 4.2629 -0.5253 -3.0568 19 6 5.2978 -0.4895 -4.1842 20 6 5.2111 0.9647 -4.7090 21 8 4.6788 1.7273 -3.6023 22 6 3.6679 0.8836 -3.0004 23 6 3.1901 -1.5920 -3.2967 24 6 2.8873 -2.1235 -1.9093 25 8 1.9218 -2.7976 -1.6190 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1266 1.4438 -0.0847 31 1 1.6091 1.9803 -0.8446 32 1 1.7474 1.9313 0.9293 33 1 1.5728 -1.7036 1.3177 34 1 1.7889 -0.1367 2.1343 35 1 3.4750 -1.5262 3.1613 36 1 5.0937 -1.3748 2.4364 37 1 5.7834 -0.1772 5.7841 38 1 4.8504 -2.4070 0.6677 39 1 3.1317 -2.8605 0.5744 40 1 5.1301 -0.0609 -1.1280 41 1 5.7737 -1.5468 -1.8878 42 1 6.2948 -0.6988 -3.7966 43 1 5.0354 -1.1993 -4.9686 44 1 6.2018 1.3299 -4.9795 45 1 4.5403 1.0191 -5.5665 46 1 2.7427 0.9292 -3.5749 47 1 3.4902 1.1806 -1.9668 48 1 2.3003 -1.1465 -3.7414 49 1 3.5773 -2.3876 -3.9333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756850075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:49 Heat of formation + Delta-G solvation = -92.337637 kcal Electronic energy + Delta-G solvation = -28468.806349 eV Core-core repulsion = 24816.059841 eV Total energy + Delta-G solvation = -3652.746508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15208 -39.90933 -38.70776 -37.02263 -35.70370 -34.68987 -33.38512 -30.82470 -29.22046 -29.03895 -27.95056 -27.73627 -26.38800 -25.06046 -23.53356 -22.61189 -21.15101 -20.81989 -20.48006 -18.55598 -17.63314 -17.46516 -17.17318 -16.70965 -16.47006 -16.31320 -16.01432 -15.75301 -15.57455 -15.20477 -14.98096 -14.61907 -14.43123 -14.26644 -13.92401 -13.74759 -13.44843 -13.33982 -13.12594 -13.01170 -12.88105 -12.77668 -12.70935 -12.60349 -12.48387 -12.22849 -12.04593 -11.85253 -11.64946 -11.58279 -11.48703 -11.45245 -11.31800 -10.76135 -10.63331 -10.59069 -9.77397 -9.12219 -8.17606 -6.26298 1.41302 1.41870 1.52594 1.55772 2.04743 2.41691 3.02323 3.12989 3.23534 3.29960 3.38619 3.56853 3.92519 3.98702 4.05589 4.08685 4.20361 4.31163 4.32734 4.36649 4.53502 4.55532 4.63987 4.65484 4.73038 4.75931 4.79037 4.81473 4.86279 4.89730 4.91635 4.97058 5.02169 5.06396 5.12046 5.14204 5.18683 5.20570 5.26597 5.47449 5.49334 5.61453 5.70572 5.92429 6.03180 6.17812 6.38090 6.55358 6.88073 7.17897 7.42702 8.92297 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.004829 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.130901 B = 5797.095372 C = 6343.824050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C -0.123 4.123 4 C 0.076 3.924 5 N -0.539 5.539 6 C 0.215 3.785 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.289 3.711 16 N -0.601 5.601 17 C 0.119 3.881 18 C -0.096 4.096 19 C -0.130 4.130 20 C 0.037 3.963 21 O -0.400 6.400 22 C 0.052 3.948 23 C -0.128 4.128 24 C 0.508 3.492 25 O -0.579 6.579 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.012 0.988 34 H 0.052 0.948 35 H -0.037 1.037 36 H 0.013 0.987 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 0.235 -21.808 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.180 4.180 4 C -0.052 4.052 5 N -0.265 5.265 6 C 0.088 3.912 7 C -0.547 4.547 8 H 0.080 0.920 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.190 1.190 15 C 0.077 3.923 16 N -0.334 5.334 17 C -0.003 4.003 18 C -0.097 4.097 19 C -0.168 4.168 20 C -0.039 4.039 21 O -0.319 6.319 22 C -0.024 4.024 23 C -0.167 4.167 24 C 0.298 3.702 25 O -0.459 6.459 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.071 0.929 35 H -0.019 1.019 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.134 0.866 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.536 0.447 -21.580 21.639 hybrid contribution -0.188 -0.360 1.747 1.794 sum -1.725 0.086 -19.833 19.908 Atomic orbital electron populations 1.21751 0.94748 1.01033 1.02137 1.21140 0.95309 0.96616 0.97269 1.21635 1.00841 0.94977 1.00591 1.22085 0.87116 0.97443 0.98548 1.61707 1.09790 1.38007 1.16949 1.19382 0.92512 0.96225 0.83048 1.21384 1.35782 0.93600 1.03911 0.91984 1.25785 0.95301 1.00923 0.97253 1.70067 1.39626 1.32393 1.15449 0.85500 0.77471 0.80015 0.78351 1.20273 1.20865 1.19018 1.21748 1.00625 0.90396 0.79581 1.48631 1.24697 1.52665 1.07402 1.22140 0.90493 0.95746 0.91928 1.21826 0.96643 0.95539 0.95703 1.22886 0.98915 0.98309 0.96685 1.23727 1.00423 0.90257 0.89498 1.89217 1.54782 1.41235 1.46683 1.23541 0.91549 0.87716 0.99642 1.22386 1.00949 0.99718 0.93679 1.21641 0.80827 0.78576 0.89152 1.90699 1.30735 1.41507 1.82953 0.92851 0.91117 0.93925 0.91221 0.93186 0.91948 0.94349 0.96959 0.92907 1.01898 0.96899 0.92821 0.89930 0.93739 0.91187 0.89122 0.89174 0.86979 0.88023 0.90672 0.90585 0.89726 0.86574 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.19 71.98 0.66 -3.40 16 2 C -0.08 -2.82 2.98 -10.79 -0.03 -2.85 16 3 C -0.12 -4.00 7.81 71.98 0.56 -3.44 16 4 C 0.08 3.10 4.22 86.30 0.36 3.47 16 5 N -0.54 -22.74 4.04 -913.16 -3.69 -26.42 16 6 C 0.21 11.09 4.69 85.56 0.40 11.50 16 7 C -0.51 -28.11 8.74 25.60 0.22 -27.88 16 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.01 0.29 5.46 84.65 0.46 0.76 16 10 N -0.93 -55.42 13.29 21.45 0.28 -55.13 16 11 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 C 0.29 10.64 5.92 170.81 1.01 11.65 16 16 N -0.60 -17.81 2.47 -830.25 -2.05 -19.86 16 17 C 0.12 2.83 6.38 86.28 0.55 3.38 16 18 C -0.10 -1.69 0.92 -52.07 -0.05 -1.74 16 19 C -0.13 -1.46 6.38 31.25 0.20 -1.26 16 20 C 0.04 0.50 7.67 72.61 0.56 1.05 16 21 O -0.40 -9.04 11.66 -148.98 -1.74 -10.78 16 22 C 0.05 1.09 6.76 72.00 0.49 1.58 16 23 C -0.13 -2.24 5.98 30.20 0.18 -2.06 16 24 C 0.51 14.61 5.61 87.98 0.49 15.11 16 25 O -0.58 -21.38 17.14 -3.03 -0.05 -21.43 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 2.30 4.04 -2.39 -0.01 2.29 16 30 H 0.05 1.80 6.81 -2.39 -0.02 1.78 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.01 0.52 7.45 -2.39 -0.02 0.50 16 34 H 0.05 2.38 7.38 -2.39 -0.02 2.36 16 35 H -0.04 -2.09 7.95 -2.39 -0.02 -2.11 16 36 H 0.01 0.71 7.44 -2.39 -0.02 0.69 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.08 2.99 7.39 -2.38 -0.02 2.98 16 39 H 0.04 1.77 6.95 -2.39 -0.02 1.75 16 40 H 0.07 2.05 7.72 -2.39 -0.02 2.03 16 41 H 0.09 1.78 7.62 -2.39 -0.02 1.77 16 42 H 0.09 0.96 7.51 -2.39 -0.02 0.94 16 43 H 0.11 0.67 7.49 -2.39 -0.02 0.65 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 1.35 7.53 -2.39 -0.02 1.33 16 47 H 0.08 2.23 5.05 -2.39 -0.01 2.21 16 48 H 0.12 1.78 7.50 -2.39 -0.02 1.76 16 49 H 0.13 1.62 7.61 -2.38 -0.02 1.60 16 Total: -1.00 -69.00 374.70 1.78 -67.23 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.92 Total: 14.29 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 6.07 Total: 5.85 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -5.45 Total: -101.41 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.79 Total: -32.21 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.00 1.78 -67.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756850075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.112 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds