Wall clock time and date at job start Fri Apr 10 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 C 1.52994 * 109.47394 * 120.00342 * 2 1 3 5 5 N 1.46905 * 109.47370 * 179.70312 * 4 2 1 6 6 C 1.46893 * 110.99988 * 286.12499 * 5 4 2 7 7 C 1.50702 * 109.47306 * 75.76203 * 6 5 4 8 8 H 1.07992 * 120.00097 * 5.03812 * 7 6 5 9 9 C 1.37881 * 119.99816 * 185.03718 * 7 6 5 10 10 N 1.31518 * 119.99623 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99912 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47158 * 90.00204 * 11 9 7 13 13 H 1.48508 * 109.47124 * 209.99684 * 11 9 7 14 14 H 1.48495 * 109.47531 * 329.99756 * 11 9 7 15 15 C 1.46897 * 111.00108 * 162.16650 * 5 4 2 16 16 N 1.46500 * 109.47206 * 278.18418 * 15 5 4 17 17 C 1.47332 * 125.58395 * 86.23714 * 16 15 5 18 18 C 1.53321 * 103.42807 * 179.73096 * 17 16 15 19 19 C 1.53489 * 110.80110 * 239.85430 * 18 17 16 20 20 C 1.55071 * 103.99686 * 215.46375 * 19 18 17 21 21 C 1.54964 * 102.84924 * 37.26215 * 20 19 18 22 22 C 1.53086 * 111.03100 * 120.56268 * 18 17 16 23 23 O 1.44849 * 104.84475 * 0.02562 * 18 17 16 24 24 C 1.34065 * 109.10786 * 359.97438 * 23 18 17 25 25 O 1.21514 * 123.10768 * 179.97438 * 24 23 18 26 26 H 1.08999 * 109.47242 * 299.99101 * 1 2 3 27 27 H 1.08999 * 109.47552 * 60.00013 * 1 2 3 28 28 H 1.09006 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46864 * 240.00622 * 2 1 3 30 30 H 1.08995 * 109.47644 * 304.79978 * 3 2 1 31 31 H 1.09001 * 109.46889 * 64.80149 * 3 2 1 32 32 H 1.09007 * 109.47133 * 184.79418 * 3 2 1 33 33 H 1.08997 * 109.47309 * 59.70319 * 4 2 1 34 34 H 1.09003 * 109.47133 * 299.70444 * 4 2 1 35 35 H 1.08997 * 109.47155 * 195.76372 * 6 5 4 36 36 H 1.09000 * 109.47075 * 315.76051 * 6 5 4 37 37 H 0.97001 * 119.99353 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.47158 * 158.18740 * 15 5 4 39 39 H 1.08998 * 109.47425 * 38.18417 * 15 5 4 40 40 H 1.09001 * 110.62830 * 298.21349 * 17 16 15 41 41 H 1.08999 * 110.62951 * 61.24432 * 17 16 15 42 42 H 1.09007 * 110.51887 * 334.09125 * 19 18 17 43 43 H 1.09001 * 110.52511 * 96.83552 * 19 18 17 44 44 H 1.09002 * 110.73835 * 278.92414 * 20 19 18 45 45 H 1.08991 * 110.74009 * 155.59923 * 20 19 18 46 46 H 1.09008 * 110.47979 * 203.81393 * 21 20 19 47 47 H 1.08990 * 110.48596 * 81.18008 * 21 20 19 48 48 H 1.09004 * 110.09314 * 240.27379 * 22 18 17 49 49 H 1.09004 * 110.09223 * 1.86030 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5091 -0.7275 1.2455 6 6 4.0290 -1.6818 0.2573 7 6 3.8819 -1.1026 -1.1262 8 1 3.5217 -0.0925 -1.2532 9 6 4.2072 -1.8625 -2.2298 10 7 4.0792 -1.3568 -3.4371 11 14 4.8309 -3.6095 -2.0100 12 1 3.6812 -4.5493 -2.0111 13 1 5.7502 -3.9508 -3.1253 14 1 5.5571 -3.7172 -0.7193 15 6 4.0376 -1.0165 2.5853 16 7 4.0362 0.2103 3.3860 17 6 2.9004 0.7175 4.1755 18 6 3.4490 2.0048 4.8022 19 6 3.4057 1.9264 6.3345 20 6 3.0752 3.3760 6.7750 21 6 2.0792 3.8485 5.6859 22 6 2.6165 3.2187 4.3816 23 8 4.8109 2.1018 4.3187 24 6 5.0705 1.0531 3.5248 25 8 6.1434 0.8821 2.9806 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6081 1.9806 -0.8438 31 1 1.7485 1.9309 0.9299 32 1 3.1266 1.4438 -0.0859 33 1 1.6724 -1.7474 1.2518 34 1 1.6810 -0.2044 2.1392 35 1 5.0822 -1.8766 0.4595 36 1 3.4681 -2.6141 0.3224 37 1 4.3077 -1.8915 -4.2135 38 1 5.0567 -1.3937 2.5003 39 1 3.4117 -1.7666 3.0688 40 1 2.0508 0.9370 3.5289 41 1 2.6208 0.0025 4.9492 42 1 2.6238 1.2403 6.6601 43 1 4.3741 1.6186 6.7289 44 1 3.9727 3.9946 6.7718 45 1 2.6040 3.3828 7.7578 46 1 2.0813 4.9362 5.6132 47 1 1.0759 3.4817 5.9015 48 1 3.2420 3.9356 3.8496 49 1 1.7869 2.9028 3.7489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778568604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:52 Heat of formation + Delta-G solvation = -64.864284 kcal Electronic energy + Delta-G solvation = -28002.111857 eV Core-core repulsion = 24350.556683 eV Total energy + Delta-G solvation = -3651.555174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71662 -38.25519 -37.66196 -35.90038 -35.01145 -33.38102 -32.32144 -29.69399 -29.21904 -28.05078 -26.53981 -26.38922 -24.55548 -23.76830 -21.71947 -21.12589 -20.78379 -19.98664 -19.17031 -17.11091 -16.83065 -16.61020 -16.42785 -15.71427 -15.23249 -15.01152 -14.57665 -14.35907 -14.19920 -13.93437 -13.74940 -13.33633 -13.21417 -12.89736 -12.67577 -12.51182 -12.29526 -12.06115 -11.94472 -11.68715 -11.49109 -11.45191 -11.40291 -11.23830 -11.16260 -10.88265 -10.66243 -10.53611 -10.44100 -10.26997 -10.20567 -10.04015 -9.95323 -9.76989 -9.04974 -8.75203 -8.50693 -7.51551 -6.03827 -3.99130 2.65937 3.07027 3.27423 3.36855 3.38416 3.48410 3.98775 4.07863 4.24885 4.42527 4.68595 4.72627 4.86552 4.91563 5.05626 5.19219 5.24226 5.25000 5.25885 5.36758 5.50238 5.54492 5.58113 5.59201 5.68154 5.71958 5.76334 5.85416 5.90114 5.97200 6.01070 6.06494 6.15811 6.23541 6.45577 6.48485 6.56409 6.65416 6.70113 6.79720 6.94430 7.25993 7.45833 7.60996 7.63881 7.83315 7.96066 8.37263 8.65184 9.07844 9.56971 11.07726 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.004235 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.121813 B = 6609.340678 C = 7377.053179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.122 4.122 4 C 0.078 3.922 5 N -0.538 5.538 6 C 0.167 3.833 7 C -0.510 4.510 8 H 0.100 0.900 9 C 0.069 3.931 10 N -0.897 5.897 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.307 3.693 16 N -0.615 5.615 17 C 0.075 3.925 18 C 0.093 3.907 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.127 4.127 23 O -0.321 6.321 24 C 0.645 3.355 25 O -0.516 6.516 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.126 0.874 30 H 0.036 0.964 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.047 0.953 35 H 0.028 0.972 36 H -0.010 1.010 37 H 0.263 0.737 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 5.670 20.238 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.180 4.180 4 C -0.050 4.050 5 N -0.264 5.264 6 C 0.041 3.959 7 C -0.548 4.548 8 H 0.118 0.882 9 C -0.132 4.132 10 N -0.536 5.536 11 Si 0.697 3.303 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.193 1.193 15 C 0.096 3.904 16 N -0.364 5.364 17 C -0.049 4.049 18 C 0.055 3.945 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.164 4.164 23 O -0.232 6.232 24 C 0.398 3.602 25 O -0.399 6.399 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.144 0.856 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.104 0.896 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.712 6.161 19.666 22.004 hybrid contribution -0.110 -1.823 0.127 1.831 sum -7.821 4.337 19.794 21.720 Atomic orbital electron populations 1.21821 0.97199 1.00521 1.00386 1.21599 0.92782 0.97356 1.01352 1.21573 1.02881 0.95180 0.98324 1.22077 0.87428 0.97793 0.97700 1.61573 1.07283 1.53457 1.04075 1.20228 0.94693 0.88935 0.92002 1.21262 1.43520 1.02733 0.87273 0.88241 1.24895 0.95308 0.97771 0.95256 1.69882 1.48901 1.37061 0.97725 0.86946 0.79229 0.85916 0.78162 1.20481 1.21233 1.19306 1.21688 1.01560 0.80803 0.86325 1.48356 1.12071 1.26480 1.49452 1.23039 0.91634 0.94575 0.95651 1.23149 0.80046 0.95926 0.95390 1.22629 1.03324 0.98568 0.91644 1.22547 0.99614 0.95393 0.98534 1.22399 0.98910 1.00763 0.93889 1.22445 0.99115 0.96184 0.98663 1.87286 1.31024 1.43771 1.61146 1.18568 0.84923 0.78427 0.78235 1.91051 1.24646 1.74622 1.49601 0.94332 0.93091 0.93586 0.85603 0.94459 0.95476 0.90969 0.95690 0.93429 0.95395 0.99203 0.92687 0.88501 0.92967 0.88936 0.89544 0.89469 0.89986 0.90883 0.90981 0.90967 0.91092 0.89594 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.19 37.16 0.34 -1.81 16 2 C -0.11 -2.09 2.40 -90.62 -0.22 -2.31 16 3 C -0.12 -2.27 8.41 37.16 0.31 -1.96 16 4 C 0.08 1.34 4.27 -3.82 -0.02 1.33 16 5 N -0.54 -10.62 3.90 -239.99 -0.94 -11.56 16 6 C 0.17 3.88 3.82 -4.98 -0.02 3.86 16 7 C -0.51 -13.74 7.49 -34.44 -0.26 -14.00 16 8 H 0.10 2.86 4.77 -52.49 -0.25 2.61 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 10 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 11 Si 0.87 21.12 27.37 -169.99 -4.65 16.47 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.32 6.69 56.52 0.38 -5.94 16 15 C 0.31 5.14 5.85 -63.32 -0.37 4.77 16 16 N -0.61 -9.54 3.19 -182.51 -0.58 -10.12 16 17 C 0.07 0.82 6.44 -3.42 -0.02 0.80 16 18 C 0.09 1.00 1.35 -90.16 -0.12 0.88 16 19 C -0.12 -0.98 6.09 -25.38 -0.15 -1.14 16 20 C -0.12 -0.84 6.92 -24.60 -0.17 -1.01 16 21 C -0.12 -0.83 6.85 -24.92 -0.17 -1.00 16 22 C -0.13 -1.18 6.33 -25.91 -0.16 -1.34 16 23 O -0.32 -5.02 10.45 -38.58 -0.40 -5.42 16 24 C 0.65 11.89 8.86 53.77 0.48 12.36 16 25 O -0.52 -11.84 17.50 -19.10 -0.33 -12.18 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.13 2.91 4.90 -51.93 -0.25 2.66 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.59 6.72 -51.93 -0.35 1.24 16 33 H 0.02 0.43 7.77 -51.93 -0.40 0.03 16 34 H 0.05 0.70 5.49 -51.93 -0.29 0.41 16 35 H 0.03 0.68 6.94 -51.93 -0.36 0.32 16 36 H -0.01 -0.22 6.91 -51.93 -0.36 -0.58 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.10 1.77 7.18 -51.93 -0.37 1.39 16 39 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 40 H 0.09 0.98 5.40 -51.93 -0.28 0.70 16 41 H 0.09 0.72 7.40 -51.93 -0.38 0.34 16 42 H 0.09 0.51 7.53 -51.93 -0.39 0.12 16 43 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.93 8.00 -51.93 -0.42 0.51 16 49 H 0.08 0.73 7.15 -51.93 -0.37 0.36 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -32.39 370.74 -9.47 -41.86 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.27 Total: 0.08 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.65 Total: 1.28 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.74 Total: -47.67 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.74 Total: -17.60 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.65 Total: 16.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.39 -9.47 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778568604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.006 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds