Wall clock time and date at job start Fri Apr 10 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 C 1.52994 * 109.47394 * 120.00342 * 2 1 3 5 5 N 1.46905 * 109.47370 * 179.70312 * 4 2 1 6 6 C 1.46893 * 110.99988 * 286.12499 * 5 4 2 7 7 C 1.50702 * 109.47306 * 75.76203 * 6 5 4 8 8 H 1.07992 * 120.00097 * 5.03812 * 7 6 5 9 9 C 1.37881 * 119.99816 * 185.03718 * 7 6 5 10 10 N 1.31518 * 119.99623 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99912 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47158 * 90.00204 * 11 9 7 13 13 H 1.48508 * 109.47124 * 209.99684 * 11 9 7 14 14 H 1.48495 * 109.47531 * 329.99756 * 11 9 7 15 15 C 1.46897 * 111.00108 * 162.16650 * 5 4 2 16 16 N 1.46500 * 109.47206 * 278.18418 * 15 5 4 17 17 C 1.47332 * 125.58395 * 86.23714 * 16 15 5 18 18 C 1.53321 * 103.42807 * 179.73096 * 17 16 15 19 19 C 1.53489 * 110.80110 * 239.85430 * 18 17 16 20 20 C 1.55071 * 103.99686 * 215.46375 * 19 18 17 21 21 C 1.54964 * 102.84924 * 37.26215 * 20 19 18 22 22 C 1.53086 * 111.03100 * 120.56268 * 18 17 16 23 23 O 1.44849 * 104.84475 * 0.02562 * 18 17 16 24 24 C 1.34065 * 109.10786 * 359.97438 * 23 18 17 25 25 O 1.21514 * 123.10768 * 179.97438 * 24 23 18 26 26 H 1.08999 * 109.47242 * 299.99101 * 1 2 3 27 27 H 1.08999 * 109.47552 * 60.00013 * 1 2 3 28 28 H 1.09006 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46864 * 240.00622 * 2 1 3 30 30 H 1.08995 * 109.47644 * 304.79978 * 3 2 1 31 31 H 1.09001 * 109.46889 * 64.80149 * 3 2 1 32 32 H 1.09007 * 109.47133 * 184.79418 * 3 2 1 33 33 H 1.08997 * 109.47309 * 59.70319 * 4 2 1 34 34 H 1.09003 * 109.47133 * 299.70444 * 4 2 1 35 35 H 1.08997 * 109.47155 * 195.76372 * 6 5 4 36 36 H 1.09000 * 109.47075 * 315.76051 * 6 5 4 37 37 H 0.97001 * 119.99353 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.47158 * 158.18740 * 15 5 4 39 39 H 1.08998 * 109.47425 * 38.18417 * 15 5 4 40 40 H 1.09001 * 110.62830 * 298.21349 * 17 16 15 41 41 H 1.08999 * 110.62951 * 61.24432 * 17 16 15 42 42 H 1.09007 * 110.51887 * 334.09125 * 19 18 17 43 43 H 1.09001 * 110.52511 * 96.83552 * 19 18 17 44 44 H 1.09002 * 110.73835 * 278.92414 * 20 19 18 45 45 H 1.08991 * 110.74009 * 155.59923 * 20 19 18 46 46 H 1.09008 * 110.47979 * 203.81393 * 21 20 19 47 47 H 1.08990 * 110.48596 * 81.18008 * 21 20 19 48 48 H 1.09004 * 110.09314 * 240.27379 * 22 18 17 49 49 H 1.09004 * 110.09223 * 1.86030 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5091 -0.7275 1.2455 6 6 4.0290 -1.6818 0.2573 7 6 3.8819 -1.1026 -1.1262 8 1 3.5217 -0.0925 -1.2532 9 6 4.2072 -1.8625 -2.2298 10 7 4.0792 -1.3568 -3.4371 11 14 4.8309 -3.6095 -2.0100 12 1 3.6812 -4.5493 -2.0111 13 1 5.7502 -3.9508 -3.1253 14 1 5.5571 -3.7172 -0.7193 15 6 4.0376 -1.0165 2.5853 16 7 4.0362 0.2103 3.3860 17 6 2.9004 0.7175 4.1755 18 6 3.4490 2.0048 4.8022 19 6 3.4057 1.9264 6.3345 20 6 3.0752 3.3760 6.7750 21 6 2.0792 3.8485 5.6859 22 6 2.6165 3.2187 4.3816 23 8 4.8109 2.1018 4.3187 24 6 5.0705 1.0531 3.5248 25 8 6.1434 0.8821 2.9806 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6081 1.9806 -0.8438 31 1 1.7485 1.9309 0.9299 32 1 3.1266 1.4438 -0.0859 33 1 1.6724 -1.7474 1.2518 34 1 1.6810 -0.2044 2.1392 35 1 5.0822 -1.8766 0.4595 36 1 3.4681 -2.6141 0.3224 37 1 4.3077 -1.8915 -4.2135 38 1 5.0567 -1.3937 2.5003 39 1 3.4117 -1.7666 3.0688 40 1 2.0508 0.9370 3.5289 41 1 2.6208 0.0025 4.9492 42 1 2.6238 1.2403 6.6601 43 1 4.3741 1.6186 6.7289 44 1 3.9727 3.9946 6.7718 45 1 2.6040 3.3828 7.7578 46 1 2.0813 4.9362 5.6132 47 1 1.0759 3.4817 5.9015 48 1 3.2420 3.9356 3.8496 49 1 1.7869 2.9028 3.7489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778568604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:51 Heat of formation + Delta-G solvation = -85.956295 kcal Electronic energy + Delta-G solvation = -28003.026476 eV Core-core repulsion = 24350.556683 eV Total energy + Delta-G solvation = -3652.469792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.84024 -39.49477 -39.02721 -36.99249 -36.31996 -34.99597 -34.21260 -30.69823 -29.86358 -29.80605 -27.84192 -27.71346 -25.56762 -25.37570 -22.97405 -22.39781 -21.69070 -21.09854 -20.67813 -18.84940 -18.15396 -17.74730 -17.63722 -16.70537 -16.67744 -16.44663 -15.83847 -15.77907 -15.39529 -15.32078 -14.81977 -14.54298 -14.40531 -14.29433 -14.08201 -13.99135 -13.48472 -13.35648 -13.14256 -12.94411 -12.81109 -12.73521 -12.49434 -12.26404 -12.05845 -12.02712 -11.95513 -11.90066 -11.72977 -11.65716 -11.54488 -11.47823 -11.44781 -11.35877 -10.94701 -10.57436 -10.01840 -9.03793 -8.19024 -6.17312 1.33442 1.37480 1.42003 1.46571 1.72056 2.38613 2.48006 3.12322 3.16303 3.24949 3.40441 3.47056 3.76781 4.05861 4.17015 4.24619 4.29963 4.33138 4.40112 4.42084 4.49117 4.51638 4.60784 4.68519 4.73653 4.76800 4.83322 4.86803 4.89771 4.93285 4.99071 5.01903 5.04918 5.15453 5.17123 5.23249 5.27247 5.28576 5.34546 5.46823 5.48254 5.62086 5.68977 5.91595 6.07193 6.35389 6.49620 6.65454 6.90851 7.01255 7.41795 8.95731 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.004235 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.121813 B = 6609.340678 C = 7377.053179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C -0.111 4.111 4 C 0.081 3.919 5 N -0.559 5.559 6 C 0.178 3.822 7 C -0.503 4.503 8 H 0.069 0.931 9 C 0.009 3.991 10 N -0.947 5.947 11 Si 0.933 3.067 12 H -0.264 1.264 13 H -0.291 1.291 14 H -0.256 1.256 15 C 0.307 3.693 16 N -0.609 5.609 17 C 0.073 3.927 18 C 0.082 3.918 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.130 4.130 23 O -0.336 6.336 24 C 0.640 3.360 25 O -0.579 6.579 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.014 0.986 36 H 0.002 0.998 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 4.734 23.913 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 C -0.168 4.168 4 C -0.046 4.046 5 N -0.285 5.285 6 C 0.051 3.949 7 C -0.542 4.542 8 H 0.087 0.913 9 C -0.188 4.188 10 N -0.589 5.589 11 Si 0.758 3.242 12 H -0.189 1.189 13 H -0.217 1.217 14 H -0.180 1.180 15 C 0.097 3.903 16 N -0.356 5.356 17 C -0.049 4.049 18 C 0.045 3.955 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.167 4.167 23 O -0.247 6.247 24 C 0.394 3.606 25 O -0.467 6.467 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.032 0.968 36 H 0.020 0.980 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.114 0.886 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.782 5.241 23.406 26.298 hybrid contribution 0.764 -1.361 -0.958 1.831 sum -10.018 3.881 22.449 24.887 Atomic orbital electron populations 1.21715 0.94111 1.01451 1.01731 1.21447 0.95356 0.96443 0.99963 1.21426 0.99755 0.96001 0.99622 1.22126 0.85676 0.98497 0.98298 1.61374 1.09045 1.53042 1.05072 1.19929 0.94208 0.89814 0.90966 1.21549 1.41559 1.01585 0.89462 0.91297 1.25709 0.96020 1.02175 0.94902 1.70039 1.51292 1.38899 0.98675 0.85918 0.79003 0.80987 0.78258 1.18917 1.21705 1.18016 1.21689 1.01129 0.82036 0.85432 1.48343 1.12828 1.25551 1.48922 1.23457 0.89989 0.95259 0.96203 1.23709 0.77736 0.96660 0.97392 1.22708 1.03921 1.00005 0.89061 1.22564 0.99231 0.94400 0.99801 1.22402 0.99807 1.00867 0.92085 1.22517 0.98779 0.95287 1.00155 1.87269 1.34160 1.42674 1.60589 1.18817 0.84780 0.79009 0.78006 1.90988 1.27267 1.76257 1.52194 0.91107 0.93628 0.92876 0.90909 0.94899 0.92515 0.95470 0.94914 0.89718 0.96830 0.98003 0.92874 0.90842 0.88528 0.87809 0.85489 0.86155 0.91121 0.92545 0.88609 0.90729 0.88725 0.92056 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.19 71.98 0.66 -3.01 16 2 C -0.11 -4.12 2.40 -10.80 -0.03 -4.14 16 3 C -0.11 -4.12 8.41 71.98 0.61 -3.52 16 4 C 0.08 2.58 4.27 86.30 0.37 2.95 16 5 N -0.56 -21.60 3.90 -913.20 -3.56 -25.17 16 6 C 0.18 8.27 3.82 85.56 0.33 8.60 16 7 C -0.50 -28.16 7.49 25.60 0.19 -27.96 16 8 H 0.07 4.22 4.77 -2.91 -0.01 4.20 16 9 C 0.01 0.50 5.47 84.66 0.46 0.96 16 10 N -0.95 -59.15 13.96 21.45 0.30 -58.86 16 11 Si 0.93 44.24 27.37 68.60 1.88 46.11 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.26 -11.52 6.69 99.48 0.67 -10.85 16 15 C 0.31 9.72 5.85 170.81 1.00 10.72 16 16 N -0.61 -17.74 3.19 -962.76 -3.07 -20.81 16 17 C 0.07 1.28 6.44 86.33 0.56 1.83 16 18 C 0.08 1.54 1.35 -10.49 -0.01 1.53 16 19 C -0.12 -1.45 6.09 31.47 0.19 -1.26 16 20 C -0.12 -1.27 6.92 31.98 0.22 -1.05 16 21 C -0.11 -1.13 6.85 31.77 0.22 -0.91 16 22 C -0.13 -2.08 6.33 31.13 0.20 -1.88 16 23 O -0.34 -10.48 10.45 -50.08 -0.52 -11.01 16 24 C 0.64 23.82 8.86 129.89 1.15 24.97 16 25 O -0.58 -27.93 17.50 19.62 0.34 -27.59 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 29 H 0.07 3.48 4.90 -2.38 -0.01 3.46 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 1.23 6.72 -2.38 -0.02 1.22 16 33 H 0.03 1.01 7.77 -2.39 -0.02 0.99 16 34 H 0.08 2.06 5.49 -2.39 -0.01 2.05 16 35 H 0.01 0.67 6.94 -2.39 -0.02 0.65 16 36 H 0.00 0.10 6.91 -2.39 -0.02 0.09 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.07 2.68 7.18 -2.39 -0.02 2.66 16 39 H 0.10 2.25 7.91 -2.39 -0.02 2.23 16 40 H 0.10 1.63 5.40 -2.39 -0.01 1.62 16 41 H 0.13 1.29 7.40 -2.39 -0.02 1.27 16 42 H 0.12 0.70 7.53 -2.38 -0.02 0.69 16 43 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 1.29 8.00 -2.39 -0.02 1.27 16 49 H 0.09 1.30 7.15 -2.38 -0.02 1.28 16 Total: -1.00 -77.98 370.74 2.37 -75.62 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.89 Total: 13.86 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.11 Total: 7.83 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -6.33 Total: -104.83 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.18 Total: -38.59 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.11 kcal Total: -77.98 2.37 -75.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778568604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.339 kcal (2) G-P(sol) polarization free energy of solvation -77.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds