Wall clock time and date at job start Fri Apr 10 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.53001 * 109.47621 * 120.00243 * 2 1 3 5 5 N 1.46497 * 109.47547 * 174.74530 * 4 2 1 6 6 C 1.46498 * 120.00036 * 275.80667 * 5 4 2 7 7 C 1.50700 * 109.47049 * 264.35800 * 6 5 4 8 8 H 1.08004 * 120.00112 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00179 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00231 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47237 * 59.99672 * 11 9 7 13 13 H 1.48495 * 109.47167 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46776 * 300.00070 * 11 9 7 15 15 C 1.34777 * 119.99868 * 95.80088 * 5 4 2 16 16 O 1.21284 * 119.99946 * 3.93449 * 15 5 4 17 17 C 1.50696 * 120.00150 * 183.92766 * 15 5 4 18 18 H 1.08994 * 109.47148 * 26.93177 * 17 15 5 19 19 C 1.53006 * 109.47074 * 266.93760 * 17 15 5 20 20 C 1.52999 * 109.47190 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.47247 * 59.99599 * 20 19 17 22 22 C 1.53002 * 109.47120 * 300.00038 * 21 20 19 23 23 H 1.08998 * 109.46875 * 179.97438 * 22 21 20 24 24 C 1.50696 * 109.47152 * 299.99946 * 22 21 20 25 25 N 1.34776 * 120.00203 * 299.99792 * 24 22 21 26 26 O 1.21286 * 119.99821 * 120.00305 * 24 22 21 27 27 C 1.52996 * 109.47034 * 60.00407 * 22 21 20 28 28 H 1.09001 * 109.47142 * 299.99734 * 1 2 3 29 29 H 1.08997 * 109.47634 * 60.00002 * 1 2 3 30 30 H 1.09004 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47186 * 239.99897 * 2 1 3 32 32 H 1.09004 * 109.47064 * 186.01132 * 3 2 1 33 33 H 1.09004 * 109.46791 * 306.00587 * 3 2 1 34 34 H 1.08996 * 109.46900 * 66.00617 * 3 2 1 35 35 H 1.08998 * 109.47082 * 54.74406 * 4 2 1 36 36 H 1.09003 * 109.46808 * 294.74677 * 4 2 1 37 37 H 1.08997 * 109.47261 * 24.36202 * 6 5 4 38 38 H 1.09004 * 109.47037 * 144.36370 * 6 5 4 39 39 H 0.97001 * 120.00433 * 179.97438 * 10 9 7 40 40 H 1.08998 * 109.47108 * 59.99927 * 19 17 15 41 41 H 1.08998 * 109.46967 * 299.99318 * 19 17 15 42 42 H 1.09004 * 109.46768 * 299.99908 * 20 19 17 43 43 H 1.08999 * 109.47256 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.47397 * 60.00422 * 21 20 19 45 45 H 1.08997 * 109.47152 * 180.02562 * 21 20 19 46 46 H 0.97003 * 120.00012 * 0.02562 * 25 24 22 47 47 H 0.96999 * 120.00224 * 180.02562 * 25 24 22 48 48 H 1.08999 * 109.47198 * 179.97438 * 27 22 21 49 49 H 1.09000 * 109.47720 * 59.99578 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.4995 -0.8318 1.1876 6 6 4.1202 -1.9340 0.4486 7 6 4.4490 -3.0549 1.4008 8 1 4.2184 -2.9562 2.4513 9 6 5.0443 -4.2063 0.9309 10 7 5.3247 -4.3267 -0.3483 11 14 5.4513 -5.5959 2.1111 12 1 4.2045 -6.0756 2.7597 13 1 6.0816 -6.7126 1.3623 14 1 6.3918 -5.1038 3.1496 15 6 4.2713 0.0807 1.8107 16 8 3.7590 0.9518 2.4813 17 6 5.7708 0.0186 1.6743 18 1 6.0302 -0.4593 0.7297 19 6 6.3552 -0.7918 2.8331 20 6 7.8777 -0.8543 2.6949 21 6 8.4511 0.5638 2.7240 22 6 7.8667 1.3741 1.5652 23 1 8.2749 2.3845 1.5862 24 6 8.2259 0.7137 0.2591 25 7 9.5200 0.5487 -0.0791 26 8 7.3503 0.3309 -0.4878 27 6 6.3443 1.4367 1.7034 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1247 1.4444 -0.1076 33 1 1.5914 1.9864 -0.8314 34 1 1.7671 1.9243 0.9388 35 1 1.6019 -1.7182 1.2975 36 1 1.7556 -0.1560 2.1367 37 1 3.4293 -2.2953 -0.3131 38 1 5.0351 -1.5822 -0.0281 39 1 5.7439 -5.1366 -0.6789 40 1 5.9464 -1.8020 2.8126 41 1 6.0959 -0.3139 3.7778 42 1 8.1374 -1.3320 1.7502 43 1 8.2941 -1.4312 3.5207 44 1 8.1914 1.0415 3.6687 45 1 9.5357 0.5193 2.6252 46 1 10.2203 0.8546 0.5183 47 1 9.7512 0.1239 -0.9200 48 1 5.9280 2.0144 0.8781 49 1 6.0845 1.9144 2.6481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786838510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:54 Heat of formation + Delta-G solvation = -108.762356 kcal Electronic energy + Delta-G solvation = -28507.134113 eV Core-core repulsion = 24853.675376 eV Total energy + Delta-G solvation = -3653.458737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39498 -38.92044 -36.61946 -35.57295 -34.02013 -33.55099 -32.16589 -30.60299 -30.41832 -27.35506 -26.70863 -25.69723 -23.61090 -23.04697 -22.36241 -21.14706 -19.70052 -19.09060 -18.08874 -17.02626 -16.46758 -16.12388 -16.09942 -15.68021 -14.87116 -14.52076 -14.33202 -14.18086 -14.08783 -13.73136 -13.43954 -13.04451 -12.84574 -12.47095 -12.33566 -11.96299 -11.84222 -11.80647 -11.77162 -11.57051 -11.42711 -11.22613 -10.96873 -10.83950 -10.74711 -10.56631 -10.50409 -10.45249 -10.19080 -10.04897 -9.93878 -9.74361 -9.52873 -9.45832 -9.17660 -8.64691 -8.37701 -7.48958 -6.07267 -4.13266 2.91295 3.27040 3.32241 3.34529 3.64589 3.71548 4.12596 4.40601 4.86805 4.93991 5.00976 5.24445 5.31073 5.36000 5.40675 5.50742 5.62621 5.65529 5.72114 5.74595 5.87860 5.93516 5.97996 6.07122 6.13404 6.14502 6.24292 6.28160 6.36930 6.40224 6.44234 6.48024 6.51300 6.61975 6.64918 6.76497 6.86007 6.89140 6.96872 7.08923 7.10252 7.46422 7.50978 7.73523 7.88808 8.19914 8.52675 8.54340 8.92250 9.26230 9.52250 10.98936 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.007374 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.644666 B = 3796.002162 C = 5751.350607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.593 5.593 6 C 0.237 3.763 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.887 5.887 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.527 3.473 16 O -0.582 6.582 17 C -0.112 4.112 18 H 0.127 0.873 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.107 4.107 23 H 0.093 0.907 24 C 0.518 3.482 25 N -0.861 5.861 26 O -0.520 6.520 27 C -0.081 4.081 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.396 0.604 47 H 0.398 0.602 48 H 0.063 0.937 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 9.953 2.319 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.117 3.883 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.525 5.525 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 C 0.316 3.684 16 O -0.464 6.464 17 C -0.132 4.132 18 H 0.145 0.855 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.147 4.147 22 C -0.128 4.128 23 H 0.111 0.889 24 C 0.303 3.697 25 N -0.425 5.425 26 O -0.395 6.395 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.224 0.776 47 H 0.229 0.771 48 H 0.082 0.918 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.087 10.056 2.145 11.471 hybrid contribution 0.838 -1.065 0.404 1.414 sum 5.924 8.990 2.549 11.064 Atomic orbital electron populations 1.21745 0.95407 1.01453 1.01225 1.21506 0.95110 0.96949 0.99694 1.21722 1.01089 0.95583 1.00796 1.21344 0.81542 1.00095 0.97203 1.48179 1.05239 1.27334 1.51486 1.19436 0.94104 0.83106 0.91654 1.21419 1.40341 1.00357 0.94770 0.92233 1.24903 0.95561 0.98147 0.95043 1.69933 1.41924 1.27828 1.12834 0.86697 0.78767 0.81789 0.81058 1.20236 1.21257 1.20070 1.20450 0.89363 0.80432 0.78124 1.90532 1.75924 1.37763 1.42180 1.21478 0.91600 0.96533 1.03619 0.85510 1.21550 0.94302 1.02656 0.96416 1.21531 0.96481 0.95311 1.02240 1.21567 0.98990 0.96614 0.97484 1.21384 0.98959 0.99763 0.92737 0.88880 1.20690 0.82450 0.78459 0.88108 1.43908 1.07778 1.65423 1.25413 1.90761 1.47440 1.48662 1.52636 1.21185 0.91152 0.97100 1.02506 0.92921 0.93057 0.92739 0.91090 0.92962 0.93946 0.92575 0.91122 0.90862 0.94987 0.93743 0.92672 0.88543 0.92876 0.91661 0.91889 0.90813 0.92095 0.77605 0.77118 0.91833 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 37.15 0.34 -1.63 16 2 C -0.11 -1.96 3.12 -90.62 -0.28 -2.24 16 3 C -0.13 -2.33 8.14 37.16 0.30 -2.03 16 4 C 0.12 2.41 4.94 -4.04 -0.02 2.39 16 5 N -0.59 -13.25 2.28 -175.06 -0.40 -13.65 16 6 C 0.24 5.94 4.98 -5.19 -0.03 5.91 16 7 C -0.53 -13.96 7.50 -34.44 -0.26 -14.22 16 8 H 0.06 1.59 7.36 -52.48 -0.39 1.20 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 11 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 C 0.53 11.62 5.35 -10.99 -0.06 11.56 16 16 O -0.58 -13.42 15.04 5.55 0.08 -13.33 16 17 C -0.11 -2.23 1.66 -91.77 -0.15 -2.38 16 18 H 0.13 2.89 3.24 -51.93 -0.17 2.72 16 19 C -0.11 -2.10 5.18 -26.73 -0.14 -2.24 16 20 C -0.12 -1.82 5.70 -26.73 -0.15 -1.97 16 21 C -0.11 -1.27 5.36 -26.73 -0.14 -1.42 16 22 C -0.11 -1.39 3.01 -91.77 -0.28 -1.67 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 C 0.52 7.66 5.91 -10.99 -0.06 7.60 16 25 N -0.86 -8.85 8.77 31.22 0.27 -8.57 16 26 O -0.52 -10.40 14.50 5.55 0.08 -10.32 16 27 C -0.08 -1.36 4.01 -26.73 -0.11 -1.46 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.05 1.02 7.06 -51.93 -0.37 0.65 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 36 H 0.07 1.46 7.21 -51.93 -0.37 1.09 16 37 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 38 H 0.04 1.21 5.93 -51.93 -0.31 0.90 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.10 2.11 5.64 -51.93 -0.29 1.82 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.13 7.22 -51.93 -0.37 0.76 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 46 H 0.40 2.68 8.25 -40.82 -0.34 2.34 16 47 H 0.40 3.92 8.93 -40.82 -0.36 3.55 16 48 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 49 H 0.07 1.23 7.85 -51.93 -0.41 0.82 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -31.74 374.40 -8.13 -39.87 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -8.39 Total: 11.02 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.13 Total: -2.11 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.61 Total: -46.52 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.16 Total: -23.66 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.74 -8.13 -39.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.895 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds