Wall clock time and date at job start Fri Apr 10 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.53001 * 109.47621 * 120.00243 * 2 1 3 5 5 N 1.46497 * 109.47547 * 174.74530 * 4 2 1 6 6 C 1.46498 * 120.00036 * 275.80667 * 5 4 2 7 7 C 1.50700 * 109.47049 * 264.35800 * 6 5 4 8 8 H 1.08004 * 120.00112 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00179 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00231 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47237 * 59.99672 * 11 9 7 13 13 H 1.48495 * 109.47167 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46776 * 300.00070 * 11 9 7 15 15 C 1.34777 * 119.99868 * 95.80088 * 5 4 2 16 16 O 1.21284 * 119.99946 * 3.93449 * 15 5 4 17 17 C 1.50696 * 120.00150 * 183.92766 * 15 5 4 18 18 H 1.08994 * 109.47148 * 26.93177 * 17 15 5 19 19 C 1.53006 * 109.47074 * 266.93760 * 17 15 5 20 20 C 1.52999 * 109.47190 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.47247 * 59.99599 * 20 19 17 22 22 C 1.53002 * 109.47120 * 300.00038 * 21 20 19 23 23 H 1.08998 * 109.46875 * 179.97438 * 22 21 20 24 24 C 1.50696 * 109.47152 * 299.99946 * 22 21 20 25 25 N 1.34776 * 120.00203 * 299.99792 * 24 22 21 26 26 O 1.21286 * 119.99821 * 120.00305 * 24 22 21 27 27 C 1.52996 * 109.47034 * 60.00407 * 22 21 20 28 28 H 1.09001 * 109.47142 * 299.99734 * 1 2 3 29 29 H 1.08997 * 109.47634 * 60.00002 * 1 2 3 30 30 H 1.09004 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47186 * 239.99897 * 2 1 3 32 32 H 1.09004 * 109.47064 * 186.01132 * 3 2 1 33 33 H 1.09004 * 109.46791 * 306.00587 * 3 2 1 34 34 H 1.08996 * 109.46900 * 66.00617 * 3 2 1 35 35 H 1.08998 * 109.47082 * 54.74406 * 4 2 1 36 36 H 1.09003 * 109.46808 * 294.74677 * 4 2 1 37 37 H 1.08997 * 109.47261 * 24.36202 * 6 5 4 38 38 H 1.09004 * 109.47037 * 144.36370 * 6 5 4 39 39 H 0.97001 * 120.00433 * 179.97438 * 10 9 7 40 40 H 1.08998 * 109.47108 * 59.99927 * 19 17 15 41 41 H 1.08998 * 109.46967 * 299.99318 * 19 17 15 42 42 H 1.09004 * 109.46768 * 299.99908 * 20 19 17 43 43 H 1.08999 * 109.47256 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.47397 * 60.00422 * 21 20 19 45 45 H 1.08997 * 109.47152 * 180.02562 * 21 20 19 46 46 H 0.97003 * 120.00012 * 0.02562 * 25 24 22 47 47 H 0.96999 * 120.00224 * 180.02562 * 25 24 22 48 48 H 1.08999 * 109.47198 * 179.97438 * 27 22 21 49 49 H 1.09000 * 109.47720 * 59.99578 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.4995 -0.8318 1.1876 6 6 4.1202 -1.9340 0.4486 7 6 4.4490 -3.0549 1.4008 8 1 4.2184 -2.9562 2.4513 9 6 5.0443 -4.2063 0.9309 10 7 5.3247 -4.3267 -0.3483 11 14 5.4513 -5.5959 2.1111 12 1 4.2045 -6.0756 2.7597 13 1 6.0816 -6.7126 1.3623 14 1 6.3918 -5.1038 3.1496 15 6 4.2713 0.0807 1.8107 16 8 3.7590 0.9518 2.4813 17 6 5.7708 0.0186 1.6743 18 1 6.0302 -0.4593 0.7297 19 6 6.3552 -0.7918 2.8331 20 6 7.8777 -0.8543 2.6949 21 6 8.4511 0.5638 2.7240 22 6 7.8667 1.3741 1.5652 23 1 8.2749 2.3845 1.5862 24 6 8.2259 0.7137 0.2591 25 7 9.5200 0.5487 -0.0791 26 8 7.3503 0.3309 -0.4878 27 6 6.3443 1.4367 1.7034 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1247 1.4444 -0.1076 33 1 1.5914 1.9864 -0.8314 34 1 1.7671 1.9243 0.9388 35 1 1.6019 -1.7182 1.2975 36 1 1.7556 -0.1560 2.1367 37 1 3.4293 -2.2953 -0.3131 38 1 5.0351 -1.5822 -0.0281 39 1 5.7439 -5.1366 -0.6789 40 1 5.9464 -1.8020 2.8126 41 1 6.0959 -0.3139 3.7778 42 1 8.1374 -1.3320 1.7502 43 1 8.2941 -1.4312 3.5207 44 1 8.1914 1.0415 3.6687 45 1 9.5357 0.5193 2.6252 46 1 10.2203 0.8546 0.5183 47 1 9.7512 0.1239 -0.9200 48 1 5.9280 2.0144 0.8781 49 1 6.0845 1.9144 2.6481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786838510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:53 Heat of formation + Delta-G solvation = -130.075747 kcal Electronic energy + Delta-G solvation = -28508.058331 eV Core-core repulsion = 24853.675376 eV Total energy + Delta-G solvation = -3654.382955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75992 -40.47686 -37.98704 -37.16698 -35.78522 -34.69319 -34.13158 -31.87210 -31.72951 -29.33606 -28.07786 -27.27794 -25.01057 -24.79919 -23.83611 -22.43589 -21.12534 -20.28463 -19.82340 -18.48816 -18.21534 -17.64757 -17.45698 -17.12919 -16.44047 -16.32980 -15.76554 -15.67141 -15.48728 -14.99858 -14.66787 -14.61286 -14.33664 -14.24303 -13.86953 -13.53702 -13.39529 -13.12871 -13.09959 -13.02706 -12.90506 -12.81941 -12.70184 -12.58238 -12.26973 -12.20714 -11.89053 -11.85174 -11.76215 -11.60687 -11.54277 -11.44691 -10.99536 -10.64026 -10.54915 -10.48969 -10.19103 -9.35155 -8.16629 -6.30659 1.39276 1.40448 1.48341 1.79417 1.88139 2.33923 2.50320 2.73096 3.12007 3.63199 3.83979 3.87958 3.90909 4.01571 4.10394 4.16329 4.28949 4.31217 4.47326 4.53354 4.62376 4.63047 4.64108 4.68178 4.76258 4.85131 4.89957 4.93504 4.97398 5.03176 5.04876 5.08347 5.16691 5.17902 5.22233 5.30319 5.36958 5.39357 5.42285 5.53451 5.59987 5.69320 5.92416 6.04105 6.09682 6.61023 6.61284 6.86404 7.35199 7.49208 7.53650 8.88966 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.007374 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.644666 B = 3796.002162 C = 5751.350607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.125 4.125 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.261 3.739 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.021 3.979 10 N -0.920 5.920 11 Si 0.952 3.048 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.265 1.265 15 C 0.520 3.480 16 O -0.594 6.594 17 C -0.110 4.110 18 H 0.098 0.902 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.101 4.101 23 H 0.138 0.862 24 C 0.511 3.489 25 N -0.838 5.838 26 O -0.585 6.585 27 C -0.077 4.077 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.010 0.990 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.417 0.583 47 H 0.402 0.598 48 H 0.044 0.956 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 10.914 3.968 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.129 4.129 3 C -0.182 4.182 4 C -0.005 4.005 5 N -0.329 5.329 6 C 0.139 3.861 7 C -0.570 4.570 8 H 0.071 0.929 9 C -0.179 4.179 10 N -0.559 5.559 11 Si 0.777 3.223 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.190 1.190 15 C 0.311 3.689 16 O -0.477 6.477 17 C -0.131 4.131 18 H 0.116 0.884 19 C -0.147 4.147 20 C -0.153 4.153 21 C -0.137 4.137 22 C -0.122 4.122 23 H 0.155 0.845 24 C 0.297 3.703 25 N -0.402 5.402 26 O -0.464 6.464 27 C -0.115 4.115 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.249 0.751 47 H 0.233 0.767 48 H 0.063 0.937 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.608 11.039 3.820 13.421 hybrid contribution 0.365 -1.337 -0.140 1.393 sum 6.973 9.702 3.680 12.502 Atomic orbital electron populations 1.21685 0.92231 1.02346 1.02715 1.21469 0.97693 0.96331 0.97434 1.21628 0.99146 0.95814 1.01650 1.21512 0.80175 1.00286 0.98531 1.48197 1.06476 1.26883 1.51308 1.18942 0.92441 0.83556 0.91119 1.21493 1.40296 1.00816 0.94411 0.92862 1.25654 0.95237 1.00460 0.96511 1.70057 1.42678 1.28578 1.14598 0.85701 0.78772 0.78717 0.79139 1.19759 1.20715 1.19011 1.20943 0.90495 0.79923 0.77575 1.90499 1.76430 1.38013 1.42765 1.21458 0.90162 0.98843 1.02647 0.88414 1.21489 0.96988 1.00099 0.96130 1.21515 0.93867 0.98395 1.01547 1.21596 1.01117 0.93427 0.97596 1.21423 0.96167 1.02294 0.92275 0.84479 1.21102 0.83032 0.77873 0.88284 1.43696 1.06905 1.63859 1.25744 1.90757 1.49515 1.51521 1.54651 1.21135 0.94097 0.94346 1.01931 0.91871 0.91083 0.92205 0.92860 0.96062 0.91339 0.92890 0.91468 0.90948 0.97149 0.96463 0.92554 0.92388 0.92068 0.94193 0.90133 0.88791 0.87894 0.75077 0.76720 0.93743 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.19 71.98 0.66 -2.89 16 2 C -0.11 -3.88 3.12 -10.80 -0.03 -3.92 16 3 C -0.13 -4.39 8.14 71.98 0.59 -3.81 16 4 C 0.12 4.84 4.94 86.38 0.43 5.27 16 5 N -0.60 -28.35 2.28 -826.16 -1.89 -30.23 16 6 C 0.26 13.95 4.98 85.63 0.43 14.38 16 7 C -0.53 -29.23 7.50 25.60 0.19 -29.04 16 8 H 0.05 2.95 7.36 -2.91 -0.02 2.93 16 9 C 0.02 1.18 5.46 84.65 0.46 1.64 16 10 N -0.92 -53.71 13.29 21.45 0.28 -53.43 16 11 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 C 0.52 24.02 5.35 87.66 0.47 24.49 16 16 O -0.59 -28.09 15.04 -3.04 -0.05 -28.13 16 17 C -0.11 -4.59 1.66 -11.54 -0.02 -4.61 16 18 H 0.10 4.78 3.24 -2.39 -0.01 4.77 16 19 C -0.11 -4.17 5.18 30.60 0.16 -4.01 16 20 C -0.12 -3.41 5.70 30.59 0.17 -3.23 16 21 C -0.10 -1.96 5.36 30.59 0.16 -1.80 16 22 C -0.10 -2.37 3.01 -11.54 -0.03 -2.41 16 23 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 24 C 0.51 14.76 5.91 87.66 0.52 15.28 16 25 N -0.84 -15.48 8.77 -173.53 -1.52 -17.01 16 26 O -0.58 -24.52 14.50 -3.05 -0.04 -24.57 16 27 C -0.08 -2.56 4.01 30.59 0.12 -2.44 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.02 0.84 7.06 -2.39 -0.02 0.83 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 35 H 0.07 2.75 8.11 -2.39 -0.02 2.73 16 36 H 0.07 2.97 7.21 -2.39 -0.02 2.95 16 37 H 0.01 0.59 8.03 -2.39 -0.02 0.57 16 38 H 0.02 1.03 5.93 -2.39 -0.01 1.02 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.06 2.64 5.64 -2.39 -0.01 2.62 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.04 1.37 7.22 -2.38 -0.02 1.36 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 1.24 7.56 -2.39 -0.02 1.22 16 46 H 0.42 4.04 8.25 -92.71 -0.76 3.28 16 47 H 0.40 7.40 8.93 -92.71 -0.83 6.57 16 48 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 49 H 0.08 2.58 7.85 -2.39 -0.02 2.56 16 Total: -1.00 -74.34 374.40 2.45 -71.89 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.64 Total: 33.43 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 4.27 Total: 2.91 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -3.12 Total: -100.67 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.09 Total: -52.70 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.34 2.45 -71.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.186 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds