Wall clock time and date at job start Fri Apr 10 2020 22:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46638 * 2 1 4 4 C 1.52996 * 109.47331 * 119.99756 * 2 1 3 5 5 N 1.46504 * 109.46765 * 63.16956 * 4 2 1 6 6 C 1.46499 * 120.00238 * 83.45006 * 5 4 2 7 7 C 1.50700 * 109.47018 * 275.99005 * 6 5 4 8 8 H 1.07998 * 120.00163 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99787 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99997 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99810 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46872 * 270.00107 * 11 9 7 13 13 H 1.48497 * 109.47204 * 29.99951 * 11 9 7 14 14 H 1.48493 * 109.46956 * 150.00325 * 11 9 7 15 15 C 1.34779 * 119.99700 * 263.44754 * 5 4 2 16 16 O 1.21277 * 120.00012 * 5.91100 * 15 5 4 17 17 C 1.50695 * 119.99943 * 185.90835 * 15 5 4 18 18 H 1.09004 * 109.47253 * 305.49075 * 17 15 5 19 19 C 1.52998 * 109.46880 * 65.48429 * 17 15 5 20 20 C 1.53003 * 109.47274 * 179.97438 * 19 17 15 21 21 C 1.53007 * 109.47238 * 300.00399 * 20 19 17 22 22 C 1.53002 * 109.46812 * 59.99570 * 21 20 19 23 23 H 1.08997 * 109.46739 * 60.00698 * 22 21 20 24 24 C 1.50703 * 109.46641 * 180.02562 * 22 21 20 25 25 N 1.34777 * 120.00041 * 300.00284 * 24 22 21 26 26 O 1.21280 * 119.99823 * 119.99780 * 24 22 21 27 27 C 1.52990 * 109.47225 * 299.99973 * 22 21 20 28 28 H 1.09002 * 109.46851 * 178.99802 * 1 2 3 29 29 H 1.09000 * 109.47285 * 298.99360 * 1 2 3 30 30 H 1.09002 * 109.47429 * 59.00345 * 1 2 3 31 31 H 1.09002 * 109.47140 * 240.00391 * 2 1 3 32 32 H 1.09006 * 109.46866 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47403 * 299.99959 * 3 2 1 34 34 H 1.09002 * 109.47035 * 60.00327 * 3 2 1 35 35 H 1.08994 * 109.47069 * 303.16815 * 4 2 1 36 36 H 1.09000 * 109.46888 * 183.16232 * 4 2 1 37 37 H 1.08994 * 109.46855 * 155.98834 * 6 5 4 38 38 H 1.08999 * 109.47124 * 35.99183 * 6 5 4 39 39 H 0.97003 * 120.00186 * 0.02562 * 10 9 7 40 40 H 1.09002 * 109.47563 * 299.99771 * 19 17 15 41 41 H 1.09003 * 109.47167 * 60.00222 * 19 17 15 42 42 H 1.09003 * 109.47752 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.47092 * 59.99905 * 20 19 17 44 44 H 1.08996 * 109.46595 * 299.99918 * 21 20 19 45 45 H 1.08995 * 109.46639 * 179.97438 * 21 20 19 46 46 H 0.97004 * 120.00255 * 359.97438 * 25 24 22 47 47 H 0.97004 * 119.99813 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.47472 * 300.00549 * 27 22 21 49 49 H 1.09003 * 109.47407 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6150 -2.1227 1.2116 6 6 2.3969 -3.1053 0.4571 7 6 1.9844 -3.0697 -0.9919 8 1 1.2169 -2.3835 -1.3182 9 6 2.5876 -3.9125 -1.9013 10 7 3.5225 -4.7478 -1.5041 11 14 2.0768 -3.8679 -3.6976 12 1 0.9656 -4.8277 -3.9202 13 1 1.6254 -2.4977 -4.0500 14 1 3.2331 -4.2428 -4.5504 15 6 0.5047 -2.5081 1.8714 16 8 -0.2011 -1.6795 2.4062 17 6 0.1403 -3.9685 1.9443 18 1 0.0917 -4.3816 0.9367 19 6 1.2007 -4.7189 2.7525 20 6 0.8304 -6.2016 2.8271 21 6 -0.5316 -6.3535 3.5075 22 6 -1.5919 -5.6030 2.6992 23 1 -1.6409 -6.0165 1.6919 24 6 -2.9333 -5.7522 3.3696 25 7 -3.4657 -6.9777 3.5467 26 8 -3.5338 -4.7695 3.7500 27 6 -1.2217 -4.1205 2.6246 28 1 -0.3633 -1.0275 -0.0180 29 1 -0.3634 0.4981 0.8989 30 1 -0.3634 0.5292 -0.8809 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.6311 -0.2412 2.1382 36 1 3.1286 -0.6723 1.2779 37 1 2.2167 -4.1011 0.8618 38 1 3.4572 -2.8663 0.5390 39 1 3.7874 -4.7712 -0.5712 40 1 2.1711 -4.6104 2.2681 41 1 1.2493 -4.3058 3.7601 42 1 1.5856 -6.7362 3.4033 43 1 0.7814 -6.6150 1.8197 44 1 -0.4826 -5.9401 4.5148 45 1 -0.7955 -7.4098 3.5602 46 1 -2.9856 -7.7637 3.2422 47 1 -4.3293 -7.0736 3.9779 48 1 -1.1727 -3.7071 3.6321 49 1 -1.9773 -3.5857 2.0492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786838512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:56 Heat of formation + Delta-G solvation = -113.465351 kcal Electronic energy + Delta-G solvation = -27882.297900 eV Core-core repulsion = 24228.635226 eV Total energy + Delta-G solvation = -3653.662674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34157 -39.28835 -37.11866 -35.80213 -34.16204 -33.72599 -32.43321 -30.87686 -30.64454 -27.07975 -26.62061 -25.74408 -24.00294 -23.09883 -22.51125 -20.82252 -19.80136 -19.40990 -18.47712 -17.56995 -17.10064 -16.50374 -16.22935 -15.31079 -14.99943 -14.84309 -14.67932 -14.17320 -13.99073 -13.80483 -13.58646 -13.26391 -12.90765 -12.84864 -12.65025 -12.30096 -11.99947 -11.98436 -11.75572 -11.62403 -11.34787 -11.20459 -11.04534 -10.84374 -10.77553 -10.66063 -10.47149 -10.36469 -10.24385 -10.21500 -10.15263 -9.88548 -9.76293 -9.66417 -9.12549 -8.87159 -8.46528 -7.60188 -6.49290 -4.24130 2.64749 3.34894 3.37691 3.40931 3.46676 3.54333 3.94091 4.41955 4.66752 4.78293 4.80785 5.18697 5.22592 5.30393 5.34433 5.41522 5.48168 5.49499 5.51985 5.60097 5.66155 5.70869 5.88415 5.98695 6.06203 6.09846 6.14674 6.19177 6.22363 6.28133 6.32434 6.36204 6.38650 6.47868 6.55135 6.57582 6.65869 6.69260 6.75578 6.90646 6.94351 7.08192 7.24853 7.48924 7.89817 8.19089 8.24065 8.47005 8.68966 9.02035 9.45594 10.85959 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.005074 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.586760 B = 5517.141670 C = 6749.122216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 C -0.141 4.141 4 C 0.130 3.870 5 N -0.590 5.590 6 C 0.215 3.785 7 C -0.610 4.610 8 H 0.060 0.940 9 C 0.024 3.976 10 N -0.908 5.908 11 Si 1.066 2.934 12 H -0.287 1.287 13 H -0.288 1.288 14 H -0.284 1.284 15 C 0.521 3.479 16 O -0.564 6.564 17 C -0.103 4.103 18 H 0.104 0.896 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.107 4.107 22 C -0.109 4.109 23 H 0.100 0.900 24 C 0.522 3.478 25 N -0.860 5.860 26 O -0.539 6.539 27 C -0.074 4.074 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.019 0.981 39 H 0.268 0.732 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.400 0.600 47 H 0.397 0.603 48 H 0.073 0.927 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -4.243 7.373 10.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.135 4.135 3 C -0.199 4.199 4 C 0.007 3.993 5 N -0.320 5.320 6 C 0.095 3.905 7 C -0.649 4.649 8 H 0.078 0.922 9 C -0.181 4.181 10 N -0.544 5.544 11 Si 0.894 3.106 12 H -0.214 1.214 13 H -0.214 1.214 14 H -0.210 1.210 15 C 0.309 3.691 16 O -0.445 6.445 17 C -0.124 4.124 18 H 0.122 0.878 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.145 4.145 22 C -0.131 4.131 23 H 0.118 0.882 24 C 0.307 3.693 25 N -0.424 5.424 26 O -0.414 6.414 27 C -0.112 4.112 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.229 0.771 47 H 0.228 0.772 48 H 0.092 0.908 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.574 -3.731 6.343 9.231 hybrid contribution -0.356 0.153 1.249 1.308 sum -5.930 -3.578 7.592 10.276 Atomic orbital electron populations 1.21671 0.95194 1.01866 0.99971 1.21569 0.96385 0.95136 1.00407 1.21771 1.00492 0.96598 1.01058 1.21299 0.98224 0.82008 0.97798 1.47963 1.26067 1.09093 1.48846 1.19785 0.90824 0.87891 0.91981 1.22403 1.24776 1.24591 0.93103 0.92197 1.25718 0.94102 0.92818 1.05450 1.70805 1.28447 1.35907 1.19224 0.83563 0.76118 0.75989 0.74881 1.21413 1.21398 1.20972 1.20333 0.80435 0.90456 0.77864 1.90611 1.50769 1.54316 1.48771 1.21229 0.95695 0.93466 1.02019 0.87793 1.21739 0.99173 0.94652 0.99988 1.21506 0.95740 0.96591 1.01376 1.21539 0.94635 0.99085 0.99270 1.21402 0.91500 0.99580 1.00599 0.88173 1.20787 0.87614 0.82789 0.78121 1.43929 1.24914 1.08715 1.64805 1.90755 1.62847 1.37971 1.49875 1.21085 0.95514 0.92244 1.02371 0.92599 0.93196 0.94289 0.88998 0.93071 0.93057 0.93311 0.91234 0.91940 0.93681 0.96319 0.92204 0.89719 0.92112 0.91440 0.91040 0.91493 0.91773 0.77133 0.77234 0.90806 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.02 37.16 0.30 -2.16 16 2 C -0.12 -2.12 2.75 -90.62 -0.25 -2.37 16 3 C -0.14 -2.12 9.19 37.16 0.34 -1.78 16 4 C 0.13 2.46 5.01 -4.04 -0.02 2.44 16 5 N -0.59 -12.08 2.24 -175.07 -0.39 -12.47 16 6 C 0.22 4.80 3.95 -5.19 -0.02 4.78 16 7 C -0.61 -15.23 8.30 -34.44 -0.29 -15.51 16 8 H 0.06 1.55 6.72 -52.49 -0.35 1.20 16 9 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 10 N -0.91 -24.70 13.65 55.43 0.76 -23.94 16 11 Si 1.07 23.65 29.90 -169.99 -5.08 18.57 16 12 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.52 10.64 5.78 -10.99 -0.06 10.58 16 16 O -0.56 -12.69 14.20 5.56 0.08 -12.61 16 17 C -0.10 -1.80 1.69 -91.77 -0.15 -1.95 16 18 H 0.10 1.95 7.69 -51.93 -0.40 1.55 16 19 C -0.12 -1.78 4.81 -26.73 -0.13 -1.91 16 20 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 21 C -0.11 -1.14 5.10 -26.73 -0.14 -1.28 16 22 C -0.11 -1.39 2.53 -91.77 -0.23 -1.62 16 23 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 24 C 0.52 6.86 7.43 -10.98 -0.08 6.78 16 25 N -0.86 -7.21 8.77 31.22 0.27 -6.94 16 26 O -0.54 -9.63 16.82 5.56 0.09 -9.54 16 27 C -0.07 -1.22 3.08 -26.74 -0.08 -1.30 16 28 H 0.05 1.20 6.57 -51.93 -0.34 0.86 16 29 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.93 6.25 -51.93 -0.32 1.60 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.32 7.32 -51.93 -0.38 0.94 16 36 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 37 H 0.05 0.98 3.84 -51.93 -0.20 0.79 16 38 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 39 H 0.27 7.13 7.22 -40.82 -0.29 6.83 16 40 H 0.08 1.40 5.34 -51.93 -0.28 1.12 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 46 H 0.40 2.19 8.25 -40.82 -0.34 1.85 16 47 H 0.40 2.89 8.93 -40.82 -0.36 2.53 16 48 H 0.07 1.33 8.00 -51.93 -0.42 0.92 16 49 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -31.23 374.92 -8.04 -39.27 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.34 Total: 8.35 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.07 Total: -6.33 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.64 Total: -43.36 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.17 Total: -22.15 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.08 Total: 18.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.23 -8.04 -39.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.199 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds