Wall clock time and date at job start Fri Apr 10 2020 22:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46638 * 2 1 4 4 C 1.52996 * 109.47331 * 119.99756 * 2 1 3 5 5 N 1.46504 * 109.46765 * 63.16956 * 4 2 1 6 6 C 1.46499 * 120.00238 * 83.45006 * 5 4 2 7 7 C 1.50700 * 109.47018 * 275.99005 * 6 5 4 8 8 H 1.07998 * 120.00163 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99787 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99997 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99810 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46872 * 270.00107 * 11 9 7 13 13 H 1.48497 * 109.47204 * 29.99951 * 11 9 7 14 14 H 1.48493 * 109.46956 * 150.00325 * 11 9 7 15 15 C 1.34779 * 119.99700 * 263.44754 * 5 4 2 16 16 O 1.21277 * 120.00012 * 5.91100 * 15 5 4 17 17 C 1.50695 * 119.99943 * 185.90835 * 15 5 4 18 18 H 1.09004 * 109.47253 * 305.49075 * 17 15 5 19 19 C 1.52998 * 109.46880 * 65.48429 * 17 15 5 20 20 C 1.53003 * 109.47274 * 179.97438 * 19 17 15 21 21 C 1.53007 * 109.47238 * 300.00399 * 20 19 17 22 22 C 1.53002 * 109.46812 * 59.99570 * 21 20 19 23 23 H 1.08997 * 109.46739 * 60.00698 * 22 21 20 24 24 C 1.50703 * 109.46641 * 180.02562 * 22 21 20 25 25 N 1.34777 * 120.00041 * 300.00284 * 24 22 21 26 26 O 1.21280 * 119.99823 * 119.99780 * 24 22 21 27 27 C 1.52990 * 109.47225 * 299.99973 * 22 21 20 28 28 H 1.09002 * 109.46851 * 178.99802 * 1 2 3 29 29 H 1.09000 * 109.47285 * 298.99360 * 1 2 3 30 30 H 1.09002 * 109.47429 * 59.00345 * 1 2 3 31 31 H 1.09002 * 109.47140 * 240.00391 * 2 1 3 32 32 H 1.09006 * 109.46866 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47403 * 299.99959 * 3 2 1 34 34 H 1.09002 * 109.47035 * 60.00327 * 3 2 1 35 35 H 1.08994 * 109.47069 * 303.16815 * 4 2 1 36 36 H 1.09000 * 109.46888 * 183.16232 * 4 2 1 37 37 H 1.08994 * 109.46855 * 155.98834 * 6 5 4 38 38 H 1.08999 * 109.47124 * 35.99183 * 6 5 4 39 39 H 0.97003 * 120.00186 * 0.02562 * 10 9 7 40 40 H 1.09002 * 109.47563 * 299.99771 * 19 17 15 41 41 H 1.09003 * 109.47167 * 60.00222 * 19 17 15 42 42 H 1.09003 * 109.47752 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.47092 * 59.99905 * 20 19 17 44 44 H 1.08996 * 109.46595 * 299.99918 * 21 20 19 45 45 H 1.08995 * 109.46639 * 179.97438 * 21 20 19 46 46 H 0.97004 * 120.00255 * 359.97438 * 25 24 22 47 47 H 0.97004 * 119.99813 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.47472 * 300.00549 * 27 22 21 49 49 H 1.09003 * 109.47407 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6150 -2.1227 1.2116 6 6 2.3969 -3.1053 0.4571 7 6 1.9844 -3.0697 -0.9919 8 1 1.2169 -2.3835 -1.3182 9 6 2.5876 -3.9125 -1.9013 10 7 3.5225 -4.7478 -1.5041 11 14 2.0768 -3.8679 -3.6976 12 1 0.9656 -4.8277 -3.9202 13 1 1.6254 -2.4977 -4.0500 14 1 3.2331 -4.2428 -4.5504 15 6 0.5047 -2.5081 1.8714 16 8 -0.2011 -1.6795 2.4062 17 6 0.1403 -3.9685 1.9443 18 1 0.0917 -4.3816 0.9367 19 6 1.2007 -4.7189 2.7525 20 6 0.8304 -6.2016 2.8271 21 6 -0.5316 -6.3535 3.5075 22 6 -1.5919 -5.6030 2.6992 23 1 -1.6409 -6.0165 1.6919 24 6 -2.9333 -5.7522 3.3696 25 7 -3.4657 -6.9777 3.5467 26 8 -3.5338 -4.7695 3.7500 27 6 -1.2217 -4.1205 2.6246 28 1 -0.3633 -1.0275 -0.0180 29 1 -0.3634 0.4981 0.8989 30 1 -0.3634 0.5292 -0.8809 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.6311 -0.2412 2.1382 36 1 3.1286 -0.6723 1.2779 37 1 2.2167 -4.1011 0.8618 38 1 3.4572 -2.8663 0.5390 39 1 3.7874 -4.7712 -0.5712 40 1 2.1711 -4.6104 2.2681 41 1 1.2493 -4.3058 3.7601 42 1 1.5856 -6.7362 3.4033 43 1 0.7814 -6.6150 1.8197 44 1 -0.4826 -5.9401 4.5148 45 1 -0.7955 -7.4098 3.5602 46 1 -2.9856 -7.7637 3.2422 47 1 -4.3293 -7.0736 3.9779 48 1 -1.1727 -3.7071 3.6321 49 1 -1.9773 -3.5857 2.0492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786838512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:56 Heat of formation + Delta-G solvation = -133.597785 kcal Electronic energy + Delta-G solvation = -27883.170908 eV Core-core repulsion = 24228.635226 eV Total energy + Delta-G solvation = -3654.535682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68654 -40.63036 -38.38089 -37.42883 -35.82761 -34.73378 -34.26267 -32.06330 -31.82870 -28.90771 -28.07435 -27.27399 -25.30823 -24.74280 -23.88701 -21.95693 -21.11451 -20.65735 -20.07289 -19.09392 -18.46939 -17.74219 -17.61057 -16.71998 -16.47727 -16.27130 -15.91990 -15.65129 -15.54759 -15.09937 -14.86935 -14.66579 -14.57442 -14.24758 -14.09549 -13.66414 -13.44829 -13.39007 -13.25283 -13.09798 -12.81829 -12.65178 -12.49192 -12.35503 -12.23889 -12.11677 -11.96644 -11.84614 -11.67194 -11.57280 -11.47059 -11.40056 -10.97606 -10.80636 -10.63974 -10.58768 -10.34677 -9.37187 -8.53489 -6.29781 1.55997 1.61310 1.62272 1.75035 1.79905 2.27284 2.57108 2.63349 3.20715 3.49055 3.70285 3.73316 3.89380 4.00310 4.04661 4.14456 4.17464 4.23572 4.32236 4.38645 4.45394 4.52692 4.61007 4.63113 4.66489 4.75644 4.80056 4.81945 4.90064 4.98890 5.00543 5.03443 5.06109 5.12770 5.18755 5.20383 5.26590 5.29939 5.39235 5.46457 5.51852 5.79799 5.91922 5.94453 6.23212 6.46663 6.58834 6.74055 7.32330 7.36609 7.47173 8.81201 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.005074 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.586760 B = 5517.141670 C = 6749.122216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.125 3.875 5 N -0.592 5.592 6 C 0.226 3.774 7 C -0.609 4.609 8 H 0.046 0.954 9 C -0.014 4.014 10 N -0.929 5.929 11 Si 1.103 2.897 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.284 1.284 15 C 0.513 3.487 16 O -0.589 6.589 17 C -0.096 4.096 18 H 0.090 0.910 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.100 4.100 22 C -0.105 4.105 23 H 0.116 0.884 24 C 0.522 3.478 25 N -0.832 5.832 26 O -0.595 6.595 27 C -0.064 4.064 28 H 0.022 0.978 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.006 0.994 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.419 0.581 47 H 0.407 0.593 48 H 0.053 0.947 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -5.751 7.441 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.131 4.131 3 C -0.191 4.191 4 C 0.002 3.998 5 N -0.321 5.321 6 C 0.105 3.895 7 C -0.648 4.648 8 H 0.064 0.936 9 C -0.215 4.215 10 N -0.566 5.566 11 Si 0.927 3.073 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.209 1.209 15 C 0.302 3.698 16 O -0.471 6.471 17 C -0.118 4.118 18 H 0.108 0.892 19 C -0.151 4.151 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.126 4.126 23 H 0.134 0.866 24 C 0.307 3.693 25 N -0.396 5.396 26 O -0.475 6.475 27 C -0.103 4.103 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.124 0.876 46 H 0.251 0.749 47 H 0.239 0.761 48 H 0.072 0.928 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.687 -5.293 6.417 10.077 hybrid contribution -0.334 0.661 1.256 1.458 sum -6.021 -4.633 7.674 10.798 Atomic orbital electron populations 1.21571 0.95757 0.99880 1.00564 1.21493 0.95781 0.97183 0.98663 1.21703 1.01180 0.94010 1.02229 1.21453 0.98867 0.81353 0.98162 1.47988 1.26003 1.09560 1.48530 1.19574 0.90083 0.88752 0.91070 1.22543 1.23983 1.23811 0.94455 0.93608 1.26747 0.93785 0.92464 1.08465 1.70890 1.29646 1.37076 1.19012 0.83066 0.76178 0.76542 0.71517 1.20096 1.20734 1.20937 1.20918 0.79946 0.91711 0.77192 1.90586 1.51372 1.55330 1.49788 1.21206 0.97143 0.91617 1.01789 0.89181 1.21705 0.97311 0.96973 0.99152 1.21498 0.97249 0.93903 1.02002 1.21547 0.92798 1.01131 0.98255 1.21359 0.92319 0.96887 1.02048 0.86640 1.20800 0.87464 0.83345 0.77647 1.43660 1.25049 1.07789 1.63105 1.90743 1.64196 1.40089 1.52518 1.20912 0.94006 0.95091 1.00273 0.95858 0.93427 0.92683 0.91712 0.91951 0.91855 0.92167 0.91257 0.90948 0.92801 0.97561 0.92834 0.91352 0.91979 0.89133 0.91171 0.91733 0.87595 0.74903 0.76113 0.92775 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.02 71.98 0.58 -4.06 16 2 C -0.11 -4.12 2.75 -10.79 -0.03 -4.15 16 3 C -0.13 -3.81 9.19 71.98 0.66 -3.15 16 4 C 0.12 4.78 5.01 86.38 0.43 5.21 16 5 N -0.59 -24.94 2.24 -826.18 -1.85 -26.79 16 6 C 0.23 10.29 3.95 85.63 0.34 10.62 16 7 C -0.61 -30.87 8.30 25.60 0.21 -30.66 16 8 H 0.05 2.43 6.72 -2.91 -0.02 2.41 16 9 C -0.01 -0.74 5.46 84.66 0.46 -0.28 16 10 N -0.93 -50.54 13.65 21.45 0.29 -50.25 16 11 Si 1.10 47.29 29.90 68.60 2.05 49.34 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.51 21.74 5.78 87.66 0.51 22.24 16 16 O -0.59 -27.59 14.20 -3.02 -0.04 -27.64 16 17 C -0.10 -3.45 1.69 -11.54 -0.02 -3.47 16 18 H 0.09 3.48 7.69 -2.38 -0.02 3.46 16 19 C -0.11 -3.40 4.81 30.59 0.15 -3.25 16 20 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 21 C -0.10 -1.82 5.10 30.60 0.16 -1.66 16 22 C -0.10 -2.52 2.53 -11.54 -0.03 -2.55 16 23 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 24 C 0.52 13.08 7.43 87.66 0.65 13.73 16 25 N -0.83 -11.57 8.77 -173.53 -1.52 -13.10 16 26 O -0.60 -21.54 16.82 -3.03 -0.05 -21.59 16 27 C -0.06 -2.19 3.08 30.59 0.09 -2.10 16 28 H 0.02 1.01 6.57 -2.39 -0.02 1.00 16 29 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 2.76 6.25 -2.39 -0.01 2.74 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 2.66 7.32 -2.39 -0.02 2.64 16 36 H 0.07 2.60 8.03 -2.39 -0.02 2.58 16 37 H 0.05 2.39 3.84 -2.39 -0.01 2.38 16 38 H 0.01 0.31 7.90 -2.39 -0.02 0.29 16 39 H 0.26 14.07 7.22 -92.71 -0.67 13.40 16 40 H 0.07 2.27 5.34 -2.39 -0.01 2.25 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.11 1.12 7.56 -2.39 -0.02 1.10 16 46 H 0.42 2.84 8.25 -92.71 -0.76 2.08 16 47 H 0.41 4.83 8.93 -92.71 -0.83 4.00 16 48 H 0.05 2.04 8.00 -2.38 -0.02 2.02 16 49 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -70.17 374.92 2.68 -67.49 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.54 Total: 28.23 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.34 Total: -5.70 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -3.08 Total: -90.13 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.09 Total: -49.23 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.05 Total: 49.34 kcal Total: -70.17 2.68 -67.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.111 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds