Wall clock time and date at job start Fri Apr 10 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46581 * 119.99827 * 2 1 3 5 5 N 1.46497 * 109.47117 * 65.62597 * 4 2 1 6 6 C 1.46496 * 120.00411 * 85.76405 * 5 4 2 7 7 C 1.50703 * 109.46794 * 269.29081 * 6 5 4 8 8 H 1.07997 * 120.00265 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99688 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00223 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47002 * 269.99528 * 11 9 7 13 13 H 1.48497 * 109.47096 * 29.99640 * 11 9 7 14 14 H 1.48502 * 109.47135 * 150.00143 * 11 9 7 15 15 C 1.34782 * 119.99290 * 265.76513 * 5 4 2 16 16 O 1.21281 * 120.00335 * 4.05813 * 15 5 4 17 17 C 1.50707 * 119.99435 * 184.06384 * 15 5 4 18 18 H 1.08996 * 109.47523 * 33.58361 * 17 15 5 19 19 C 1.52999 * 109.46870 * 273.57755 * 17 15 5 20 20 C 1.53001 * 109.47021 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47361 * 59.99987 * 20 19 17 22 22 C 1.53009 * 109.46965 * 300.00379 * 21 20 19 23 23 H 1.09007 * 109.46846 * 299.99762 * 22 21 20 24 24 C 1.50693 * 109.46991 * 180.02562 * 22 21 20 25 25 N 1.34775 * 120.00444 * 59.99780 * 24 22 21 26 26 O 1.21283 * 120.00282 * 239.99952 * 24 22 21 27 27 C 1.52992 * 109.47476 * 59.99724 * 22 21 20 28 28 H 1.08996 * 109.46781 * 60.37424 * 1 2 3 29 29 H 1.08994 * 109.47016 * 180.37313 * 1 2 3 30 30 H 1.09003 * 109.47024 * 300.37899 * 1 2 3 31 31 H 1.08996 * 109.46949 * 239.99658 * 2 1 3 32 32 H 1.09004 * 109.47283 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47588 * 299.99536 * 3 2 1 34 34 H 1.09005 * 109.47545 * 60.00242 * 3 2 1 35 35 H 1.08999 * 109.47378 * 305.61559 * 4 2 1 36 36 H 1.09003 * 109.46398 * 185.61896 * 4 2 1 37 37 H 1.08999 * 109.47156 * 149.29672 * 6 5 4 38 38 H 1.08995 * 109.47332 * 29.29075 * 6 5 4 39 39 H 0.97007 * 119.99776 * 0.02562 * 10 9 7 40 40 H 1.09007 * 109.47116 * 300.00345 * 19 17 15 41 41 H 1.08994 * 109.47087 * 60.00281 * 19 17 15 42 42 H 1.08997 * 109.47167 * 299.99858 * 20 19 17 43 43 H 1.08998 * 109.47144 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47361 * 180.02562 * 21 20 19 45 45 H 1.08997 * 109.47085 * 59.99821 * 21 20 19 46 46 H 0.97007 * 119.99945 * 359.97438 * 25 24 22 47 47 H 0.97003 * 120.00274 * 180.02562 * 25 24 22 48 48 H 1.08993 * 109.47354 * 179.97438 * 27 22 21 49 49 H 1.09007 * 109.47052 * 60.00164 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6652 -2.1360 1.1836 6 6 2.5228 -3.0887 0.4744 7 6 2.0866 -3.1821 -0.9651 8 1 1.2537 -2.5913 -1.3164 9 6 2.7503 -4.0228 -1.8333 10 7 3.7643 -4.7427 -1.4054 11 14 2.2102 -4.1381 -3.6178 12 1 1.1884 -5.2066 -3.7576 13 1 1.6300 -2.8394 -4.0443 14 1 3.3829 -4.4602 -4.4701 15 6 0.5314 -2.5609 1.7756 16 8 -0.2157 -1.7617 2.2991 17 6 0.1921 -4.0292 1.7871 18 1 1.1098 -4.6138 1.8508 19 6 -0.5544 -4.3902 0.5012 20 6 -0.8994 -5.8807 0.5132 21 6 -1.7860 -6.1894 1.7213 22 6 -1.0395 -5.8283 3.0072 23 1 -0.1218 -6.4132 3.0711 24 6 -1.9125 -6.1329 4.1972 25 7 -2.3425 -7.3918 4.4130 26 8 -2.2282 -5.2451 4.9608 27 6 -0.6945 -4.3378 2.9953 28 1 -0.3633 0.5080 -0.8933 29 1 -0.3633 -1.0276 0.0067 30 1 -0.3633 0.5197 0.8866 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.5968 -0.2688 2.1364 36 1 3.1253 -0.6349 1.3010 37 1 2.4414 -4.0695 0.9430 38 1 3.5576 -2.7493 0.5192 39 1 4.0451 -4.6825 -0.4788 40 1 -1.4722 -3.8056 0.4376 41 1 0.0771 -4.1700 -0.3594 42 1 0.0181 -6.4656 0.5770 43 1 -1.4316 -6.1378 -0.4026 44 1 -2.0314 -7.2514 1.7301 45 1 -2.7036 -5.6046 1.6575 46 1 -2.0904 -8.1019 3.8020 47 1 -2.9048 -7.5878 5.1787 48 1 -0.1631 -4.0805 3.9115 49 1 -1.6121 -3.7530 2.9315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786838514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:59 Heat of formation + Delta-G solvation = -118.505609 kcal Electronic energy + Delta-G solvation = -28007.080807 eV Core-core repulsion = 24353.199571 eV Total energy + Delta-G solvation = -3653.881236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27608 -39.26872 -37.04667 -35.74084 -34.19533 -33.72497 -32.40524 -30.77041 -30.57313 -27.10401 -26.65144 -25.74207 -23.78492 -23.15045 -22.50153 -20.75765 -19.79669 -19.44069 -18.39701 -17.56168 -16.98491 -16.42181 -16.32270 -15.36255 -15.06102 -14.76611 -14.30860 -14.11438 -13.91905 -13.83643 -13.59302 -13.27065 -12.96177 -12.74422 -12.64118 -12.24123 -12.05952 -11.81589 -11.75825 -11.66332 -11.37003 -11.17278 -10.99336 -10.86717 -10.72269 -10.62683 -10.41591 -10.35408 -10.24006 -10.21775 -10.04805 -9.93175 -9.75490 -9.58767 -9.16085 -8.83410 -8.49043 -7.62466 -6.51165 -4.25731 2.65280 3.32875 3.36699 3.40973 3.48550 3.52349 3.95221 4.39522 4.72717 4.85553 4.89215 5.19085 5.27703 5.39490 5.42303 5.43492 5.50779 5.54732 5.63976 5.65516 5.72266 5.78543 5.89908 5.99870 6.09061 6.15555 6.18042 6.26688 6.29429 6.29657 6.35720 6.44505 6.50229 6.52087 6.56916 6.62535 6.69258 6.77349 6.88555 6.90724 7.01504 7.03763 7.25513 7.47875 7.87048 8.16903 8.24493 8.44581 8.65668 9.03980 9.43313 10.83739 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.005347 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.194043 B = 5234.873060 C = 6839.572342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.129 3.871 5 N -0.592 5.592 6 C 0.226 3.774 7 C -0.605 4.605 8 H 0.060 0.940 9 C 0.026 3.974 10 N -0.906 5.906 11 Si 1.063 2.937 12 H -0.286 1.286 13 H -0.288 1.288 14 H -0.284 1.284 15 C 0.522 3.478 16 O -0.566 6.566 17 C -0.097 4.097 18 H 0.090 0.910 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.107 4.107 23 H 0.098 0.902 24 C 0.522 3.478 25 N -0.860 5.860 26 O -0.540 6.540 27 C -0.079 4.079 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.022 0.978 39 H 0.268 0.732 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.401 0.599 47 H 0.397 0.603 48 H 0.065 0.935 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -3.701 4.601 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.005 3.995 5 N -0.321 5.321 6 C 0.106 3.894 7 C -0.643 4.643 8 H 0.078 0.922 9 C -0.179 4.179 10 N -0.541 5.541 11 Si 0.891 3.109 12 H -0.213 1.213 13 H -0.214 1.214 14 H -0.210 1.210 15 C 0.311 3.689 16 O -0.446 6.446 17 C -0.118 4.118 18 H 0.108 0.892 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.128 4.128 23 H 0.116 0.884 24 C 0.307 3.693 25 N -0.423 5.423 26 O -0.416 6.416 27 C -0.117 4.117 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.229 0.771 47 H 0.227 0.773 48 H 0.083 0.917 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.982 -3.314 3.813 8.618 hybrid contribution -0.279 0.165 1.372 1.410 sum -7.261 -3.150 5.185 9.462 Atomic orbital electron populations 1.21687 0.95134 1.02017 0.99889 1.21533 0.96388 0.95192 1.00208 1.21769 1.00532 0.96535 1.01089 1.21324 0.98704 0.81690 0.97761 1.48013 1.23238 1.08543 1.52328 1.19529 0.89679 0.87680 0.92553 1.22288 1.19064 1.28515 0.94440 0.92211 1.25694 0.94115 0.92920 1.05221 1.70797 1.25328 1.39190 1.18815 0.83605 0.76066 0.76160 0.75025 1.21262 1.21367 1.20995 1.20359 0.80644 0.90479 0.77447 1.90603 1.49429 1.56650 1.47910 1.21196 1.00028 0.93903 0.96639 0.89157 1.21692 1.00530 0.95125 0.98376 1.21476 0.99493 0.97228 0.96750 1.21569 0.99005 1.00598 0.93460 1.21370 0.98707 0.99905 0.92849 0.88431 1.20821 0.79866 0.82109 0.86520 1.43929 1.55828 1.10421 1.32161 1.90749 1.57302 1.45717 1.47865 1.21164 1.00926 0.92413 0.97239 0.94305 0.92445 0.93266 0.89302 0.93037 0.93032 0.93277 0.91225 0.91834 0.95340 0.96033 0.92114 0.92599 0.87298 0.91372 0.91511 0.91982 0.91515 0.77109 0.77257 0.91671 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.06 37.16 0.30 -2.08 16 2 C -0.11 -2.03 3.07 -90.62 -0.28 -2.31 16 3 C -0.14 -2.07 9.19 37.16 0.34 -1.72 16 4 C 0.13 2.40 4.99 -4.04 -0.02 2.38 16 5 N -0.59 -12.08 2.28 -175.06 -0.40 -12.48 16 6 C 0.23 5.01 4.32 -5.19 -0.02 4.98 16 7 C -0.60 -14.46 6.22 -34.44 -0.21 -14.68 16 8 H 0.06 1.49 7.20 -52.49 -0.38 1.11 16 9 C 0.03 0.65 5.46 -17.82 -0.10 0.55 16 10 N -0.91 -24.26 13.65 55.43 0.76 -23.51 16 11 Si 1.06 22.96 29.90 -169.99 -5.08 17.88 16 12 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 C 0.52 10.71 5.53 -10.98 -0.06 10.65 16 16 O -0.57 -12.71 14.17 5.56 0.08 -12.64 16 17 C -0.10 -1.72 1.82 -91.77 -0.17 -1.89 16 18 H 0.09 1.63 6.10 -51.93 -0.32 1.31 16 19 C -0.12 -2.06 5.16 -26.73 -0.14 -2.19 16 20 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 21 C -0.11 -1.26 5.10 -26.73 -0.14 -1.40 16 22 C -0.11 -1.38 2.52 -91.77 -0.23 -1.61 16 23 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 24 C 0.52 6.93 7.43 -10.99 -0.08 6.84 16 25 N -0.86 -7.33 8.77 31.22 0.27 -7.06 16 26 O -0.54 -9.68 16.82 5.55 0.09 -9.58 16 27 C -0.08 -1.32 3.32 -26.73 -0.09 -1.41 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.19 6.28 -51.93 -0.33 0.86 16 30 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 31 H 0.09 1.80 6.82 -51.93 -0.35 1.45 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.31 7.36 -51.93 -0.38 0.93 16 36 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 37 H 0.03 0.64 5.68 -51.93 -0.30 0.35 16 38 H 0.02 0.51 7.79 -51.93 -0.40 0.10 16 39 H 0.27 7.11 7.22 -40.82 -0.29 6.82 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 2.18 5.37 -51.93 -0.28 1.91 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.40 2.27 8.25 -40.82 -0.34 1.93 16 47 H 0.40 2.92 8.93 -40.82 -0.36 2.56 16 48 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 49 H 0.08 1.47 7.82 -51.93 -0.41 1.06 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -30.18 374.87 -8.07 -38.25 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.39 Total: 9.07 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.05 Total: -5.58 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.63 Total: -43.05 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.08 Total: 17.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.18 -8.07 -38.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.255 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds