Wall clock time and date at job start Fri Apr 10 2020 22:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46581 * 119.99827 * 2 1 3 5 5 N 1.46497 * 109.47117 * 65.62597 * 4 2 1 6 6 C 1.46496 * 120.00411 * 85.76405 * 5 4 2 7 7 C 1.50703 * 109.46794 * 269.29081 * 6 5 4 8 8 H 1.07997 * 120.00265 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99688 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00223 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47002 * 269.99528 * 11 9 7 13 13 H 1.48497 * 109.47096 * 29.99640 * 11 9 7 14 14 H 1.48502 * 109.47135 * 150.00143 * 11 9 7 15 15 C 1.34782 * 119.99290 * 265.76513 * 5 4 2 16 16 O 1.21281 * 120.00335 * 4.05813 * 15 5 4 17 17 C 1.50707 * 119.99435 * 184.06384 * 15 5 4 18 18 H 1.08996 * 109.47523 * 33.58361 * 17 15 5 19 19 C 1.52999 * 109.46870 * 273.57755 * 17 15 5 20 20 C 1.53001 * 109.47021 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47361 * 59.99987 * 20 19 17 22 22 C 1.53009 * 109.46965 * 300.00379 * 21 20 19 23 23 H 1.09007 * 109.46846 * 299.99762 * 22 21 20 24 24 C 1.50693 * 109.46991 * 180.02562 * 22 21 20 25 25 N 1.34775 * 120.00444 * 59.99780 * 24 22 21 26 26 O 1.21283 * 120.00282 * 239.99952 * 24 22 21 27 27 C 1.52992 * 109.47476 * 59.99724 * 22 21 20 28 28 H 1.08996 * 109.46781 * 60.37424 * 1 2 3 29 29 H 1.08994 * 109.47016 * 180.37313 * 1 2 3 30 30 H 1.09003 * 109.47024 * 300.37899 * 1 2 3 31 31 H 1.08996 * 109.46949 * 239.99658 * 2 1 3 32 32 H 1.09004 * 109.47283 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47588 * 299.99536 * 3 2 1 34 34 H 1.09005 * 109.47545 * 60.00242 * 3 2 1 35 35 H 1.08999 * 109.47378 * 305.61559 * 4 2 1 36 36 H 1.09003 * 109.46398 * 185.61896 * 4 2 1 37 37 H 1.08999 * 109.47156 * 149.29672 * 6 5 4 38 38 H 1.08995 * 109.47332 * 29.29075 * 6 5 4 39 39 H 0.97007 * 119.99776 * 0.02562 * 10 9 7 40 40 H 1.09007 * 109.47116 * 300.00345 * 19 17 15 41 41 H 1.08994 * 109.47087 * 60.00281 * 19 17 15 42 42 H 1.08997 * 109.47167 * 299.99858 * 20 19 17 43 43 H 1.08998 * 109.47144 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47361 * 180.02562 * 21 20 19 45 45 H 1.08997 * 109.47085 * 59.99821 * 21 20 19 46 46 H 0.97007 * 119.99945 * 359.97438 * 25 24 22 47 47 H 0.97003 * 120.00274 * 180.02562 * 25 24 22 48 48 H 1.08993 * 109.47354 * 179.97438 * 27 22 21 49 49 H 1.09007 * 109.47052 * 60.00164 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6652 -2.1360 1.1836 6 6 2.5228 -3.0887 0.4744 7 6 2.0866 -3.1821 -0.9651 8 1 1.2537 -2.5913 -1.3164 9 6 2.7503 -4.0228 -1.8333 10 7 3.7643 -4.7427 -1.4054 11 14 2.2102 -4.1381 -3.6178 12 1 1.1884 -5.2066 -3.7576 13 1 1.6300 -2.8394 -4.0443 14 1 3.3829 -4.4602 -4.4701 15 6 0.5314 -2.5609 1.7756 16 8 -0.2157 -1.7617 2.2991 17 6 0.1921 -4.0292 1.7871 18 1 1.1098 -4.6138 1.8508 19 6 -0.5544 -4.3902 0.5012 20 6 -0.8994 -5.8807 0.5132 21 6 -1.7860 -6.1894 1.7213 22 6 -1.0395 -5.8283 3.0072 23 1 -0.1218 -6.4132 3.0711 24 6 -1.9125 -6.1329 4.1972 25 7 -2.3425 -7.3918 4.4130 26 8 -2.2282 -5.2451 4.9608 27 6 -0.6945 -4.3378 2.9953 28 1 -0.3633 0.5080 -0.8933 29 1 -0.3633 -1.0276 0.0067 30 1 -0.3633 0.5197 0.8866 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.5968 -0.2688 2.1364 36 1 3.1253 -0.6349 1.3010 37 1 2.4414 -4.0695 0.9430 38 1 3.5576 -2.7493 0.5192 39 1 4.0451 -4.6825 -0.4788 40 1 -1.4722 -3.8056 0.4376 41 1 0.0771 -4.1700 -0.3594 42 1 0.0181 -6.4656 0.5770 43 1 -1.4316 -6.1378 -0.4026 44 1 -2.0314 -7.2514 1.7301 45 1 -2.7036 -5.6046 1.6575 46 1 -2.0904 -8.1019 3.8020 47 1 -2.9048 -7.5878 5.1787 48 1 -0.1631 -4.0805 3.9115 49 1 -1.6121 -3.7530 2.9315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786838514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:58 Heat of formation + Delta-G solvation = -137.615006 kcal Electronic energy + Delta-G solvation = -28007.909453 eV Core-core repulsion = 24353.199571 eV Total energy + Delta-G solvation = -3654.709882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63830 -40.62583 -38.34740 -37.35306 -35.85970 -34.71949 -34.21559 -32.00979 -31.81927 -28.89932 -28.05833 -27.28405 -25.03979 -24.89246 -23.90894 -21.94307 -21.13653 -20.69026 -20.02573 -18.93194 -18.41412 -17.82734 -17.60629 -16.86426 -16.43652 -16.12167 -15.65824 -15.59497 -15.51297 -15.06077 -15.03035 -14.66745 -14.49466 -14.21332 -14.08784 -13.71638 -13.47617 -13.43290 -13.10581 -13.09172 -12.77580 -12.71826 -12.52564 -12.31064 -12.25186 -12.01750 -11.94265 -11.82361 -11.65133 -11.55972 -11.49514 -11.36165 -10.98637 -10.79350 -10.63637 -10.51241 -10.35928 -9.38068 -8.50593 -6.25742 1.59074 1.62139 1.64414 1.76361 1.81999 2.26796 2.59846 2.64191 3.23675 3.52305 3.72040 3.79367 3.89636 4.00777 4.05426 4.16120 4.21227 4.25911 4.38201 4.43623 4.47753 4.51285 4.61465 4.64392 4.69837 4.74687 4.79598 4.83126 4.94926 4.98493 5.04701 5.05040 5.08068 5.15663 5.20577 5.21403 5.30556 5.40496 5.50070 5.51024 5.53022 5.78932 5.92101 5.94188 6.24846 6.46639 6.59855 6.72350 7.34507 7.36609 7.49752 8.83732 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.005347 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.194043 B = 5234.873060 C = 6839.572342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.594 5.594 6 C 0.238 3.762 7 C -0.591 4.591 8 H 0.048 0.952 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 1.099 2.901 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.289 1.289 15 C 0.515 3.485 16 O -0.589 6.589 17 C -0.091 4.091 18 H 0.090 0.910 19 C -0.115 4.115 20 C -0.107 4.107 21 C -0.100 4.100 22 C -0.102 4.102 23 H 0.120 0.880 24 C 0.523 3.477 25 N -0.832 5.832 26 O -0.595 6.595 27 C -0.069 4.069 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.010 0.990 39 H 0.260 0.740 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.059 0.941 46 H 0.419 0.581 47 H 0.407 0.593 48 H 0.046 0.954 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 -5.084 4.039 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.117 3.883 7 C -0.630 4.630 8 H 0.066 0.934 9 C -0.212 4.212 10 N -0.568 5.568 11 Si 0.924 3.076 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.214 1.214 15 C 0.305 3.695 16 O -0.471 6.471 17 C -0.112 4.112 18 H 0.108 0.892 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.123 4.123 23 H 0.137 0.863 24 C 0.308 3.692 25 N -0.396 5.396 26 O -0.476 6.476 27 C -0.108 4.108 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.124 0.876 45 H 0.078 0.922 46 H 0.251 0.749 47 H 0.239 0.761 48 H 0.065 0.935 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.752 -4.747 3.246 9.652 hybrid contribution -0.048 0.639 1.588 1.712 sum -7.800 -4.108 4.834 10.054 Atomic orbital electron populations 1.21590 0.95534 1.00176 1.00547 1.21454 0.95929 0.97120 0.98353 1.21704 1.01137 0.94037 1.02277 1.21488 0.99371 0.80896 0.98232 1.48051 1.23068 1.09142 1.52049 1.19279 0.89101 0.87909 0.92028 1.22307 1.18053 1.27496 0.95111 0.93398 1.26697 0.93771 0.92632 1.08093 1.70894 1.26705 1.40717 1.18462 0.83115 0.75989 0.76897 0.71635 1.19531 1.20665 1.21446 1.20890 0.80232 0.91643 0.76783 1.90579 1.50008 1.57580 1.48901 1.21189 1.00293 0.91944 0.97759 0.89243 1.21599 0.99221 0.97996 0.96462 1.21453 1.00290 0.94118 0.98583 1.21547 0.97778 1.03142 0.91285 1.21327 1.00000 0.97189 0.93827 0.86259 1.20787 0.79609 0.82876 0.85919 1.43661 1.54335 1.09177 1.32422 1.90739 1.59487 1.47678 1.49649 1.20998 0.99010 0.95207 0.95591 0.92643 0.95477 0.93483 0.91854 0.92056 0.91741 0.92186 0.91411 0.90840 0.95462 0.97250 0.93020 0.93552 0.90243 0.91116 0.90060 0.87632 0.92199 0.74908 0.76097 0.93483 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 8.06 71.98 0.58 -3.90 16 2 C -0.11 -3.89 3.07 -10.79 -0.03 -3.93 16 3 C -0.13 -3.70 9.19 71.98 0.66 -3.04 16 4 C 0.12 4.66 4.99 86.38 0.43 5.09 16 5 N -0.59 -24.94 2.28 -826.15 -1.89 -26.83 16 6 C 0.24 10.78 4.32 85.63 0.37 11.15 16 7 C -0.59 -28.65 6.22 25.60 0.16 -28.49 16 8 H 0.05 2.43 7.20 -2.91 -0.02 2.41 16 9 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 10 N -0.93 -50.01 13.65 21.45 0.29 -49.72 16 11 Si 1.10 45.74 29.90 68.60 2.05 47.79 16 12 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.51 21.85 5.53 87.66 0.49 22.34 16 16 O -0.59 -27.49 14.17 -3.03 -0.04 -27.53 16 17 C -0.09 -3.30 1.82 -11.54 -0.02 -3.33 16 18 H 0.09 3.26 6.10 -2.39 -0.01 3.25 16 19 C -0.11 -3.97 5.16 30.59 0.16 -3.81 16 20 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 21 C -0.10 -2.03 5.10 30.60 0.16 -1.88 16 22 C -0.10 -2.47 2.52 -11.54 -0.03 -2.50 16 23 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 24 C 0.52 13.02 7.43 87.66 0.65 13.68 16 25 N -0.83 -11.55 8.77 -173.54 -1.52 -13.08 16 26 O -0.60 -21.32 16.82 -3.04 -0.05 -21.37 16 27 C -0.07 -2.36 3.32 30.59 0.10 -2.26 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 1.14 6.28 -2.39 -0.02 1.12 16 30 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.06 2.60 6.82 -2.39 -0.02 2.58 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 2.59 7.36 -2.39 -0.02 2.57 16 36 H 0.07 2.60 7.95 -2.39 -0.02 2.58 16 37 H 0.03 1.26 5.68 -2.39 -0.01 1.25 16 38 H 0.01 0.46 7.79 -2.39 -0.02 0.44 16 39 H 0.26 13.98 7.22 -92.70 -0.67 13.31 16 40 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.08 3.23 5.37 -2.39 -0.01 3.22 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.11 1.30 7.56 -2.39 -0.02 1.28 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.42 2.89 8.25 -92.70 -0.76 2.13 16 47 H 0.41 4.80 8.93 -92.71 -0.83 3.97 16 48 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 49 H 0.05 2.04 7.82 -2.38 -0.02 2.02 16 Total: -1.00 -67.73 374.87 2.62 -65.11 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.54 Total: 29.16 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.31 Total: -3.55 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -3.12 Total: -89.62 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -0.09 Total: -48.90 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.05 Total: 47.79 kcal Total: -67.73 2.62 -65.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.503 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds