Wall clock time and date at job start Fri Apr 10 2020 22:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47207 * 2 1 4 4 C 1.53004 * 109.47269 * 119.99919 * 2 1 3 5 5 N 1.46501 * 109.46931 * 64.99803 * 4 2 1 6 6 C 1.46498 * 119.99919 * 264.20305 * 5 4 2 7 7 C 1.50697 * 109.47392 * 262.65092 * 6 5 4 8 8 H 1.08006 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00514 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00015 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99549 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47337 * 89.99680 * 11 9 7 13 13 H 1.48500 * 109.46930 * 209.99672 * 11 9 7 14 14 H 1.48500 * 109.47234 * 329.99555 * 11 9 7 15 15 C 1.34774 * 119.99956 * 84.20552 * 5 4 2 16 16 O 1.21280 * 120.00071 * 4.88648 * 15 5 4 17 17 C 1.50698 * 119.99849 * 184.87720 * 15 5 4 18 18 H 1.08991 * 109.47610 * 309.34872 * 17 15 5 19 19 C 1.53005 * 109.46701 * 69.34964 * 17 15 5 20 20 C 1.52993 * 109.47334 * 59.99684 * 19 17 15 21 21 C 1.52997 * 109.47198 * 60.00348 * 20 19 17 22 22 C 1.53002 * 109.46948 * 299.99567 * 21 20 19 23 23 H 1.09002 * 109.47461 * 300.00552 * 22 21 20 24 24 C 1.50701 * 109.47440 * 180.02562 * 22 21 20 25 25 N 1.34780 * 119.99901 * 59.99754 * 24 22 21 26 26 O 1.21278 * 119.99896 * 240.00850 * 24 22 21 27 27 C 1.52997 * 109.47320 * 189.34303 * 17 15 5 28 28 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47307 * 300.00504 * 1 2 3 30 30 H 1.09005 * 109.46997 * 60.00351 * 1 2 3 31 31 H 1.09004 * 109.47307 * 239.99496 * 2 1 3 32 32 H 1.09007 * 109.47139 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47310 * 299.99615 * 3 2 1 34 34 H 1.08994 * 109.47540 * 59.99704 * 3 2 1 35 35 H 1.09000 * 109.46908 * 304.99927 * 4 2 1 36 36 H 1.08994 * 109.47224 * 185.00147 * 4 2 1 37 37 H 1.09002 * 109.47683 * 22.64845 * 6 5 4 38 38 H 1.09001 * 109.47474 * 142.65293 * 6 5 4 39 39 H 0.97006 * 119.99688 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47278 * 180.02562 * 19 17 15 41 41 H 1.09002 * 109.46869 * 299.99075 * 19 17 15 42 42 H 1.09004 * 109.47080 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47283 * 299.99422 * 20 19 17 44 44 H 1.08995 * 109.47676 * 59.99752 * 21 20 19 45 45 H 1.09005 * 109.47280 * 180.02562 * 21 20 19 46 46 H 0.97003 * 119.99573 * 0.02562 * 25 24 22 47 47 H 0.96993 * 119.99854 * 179.97438 * 25 24 22 48 48 H 1.09000 * 109.47082 * 60.00179 * 27 17 15 49 49 H 1.08995 * 109.47676 * 180.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4374 -2.5877 1.8711 7 6 0.8006 -3.1673 3.2139 8 1 1.8334 -3.1945 3.5288 9 6 -0.1854 -3.6628 4.0405 10 7 0.1317 -4.1690 5.2121 11 14 -1.9715 -3.6163 3.4955 12 1 -2.2995 -4.8680 2.7667 13 1 -2.8494 -3.4926 4.6869 14 1 -2.1856 -2.4514 2.5998 15 6 2.4136 -3.0130 0.5107 16 8 3.4646 -2.6554 0.0224 17 6 1.9589 -4.4415 0.3573 18 1 1.6887 -4.8437 1.3336 19 6 0.7428 -4.4928 -0.5698 20 6 1.1221 -3.9283 -1.9402 21 6 2.2558 -4.7629 -2.5396 22 6 3.4719 -4.7115 -1.6126 23 1 3.8008 -3.6782 -1.5016 24 6 4.5888 -5.5330 -2.2032 25 7 5.0891 -5.2182 -3.4144 26 8 5.0373 -6.4774 -1.5886 27 6 3.0926 -5.2760 -0.2420 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.2386 -1.7440 2.0104 38 1 -0.0535 -3.3506 1.2669 39 1 -0.5620 -4.5173 5.7938 40 1 0.4136 -5.5260 -0.6804 41 1 -0.0649 -3.8984 -0.1427 42 1 0.2556 -3.9645 -2.6006 43 1 1.4509 -2.8950 -1.8293 44 1 1.9269 -5.7961 -2.6506 45 1 2.5263 -4.3604 -3.5158 46 1 4.7305 -4.4626 -3.9058 47 1 5.8083 -5.7467 -3.7943 48 1 3.9590 -5.2395 0.4184 49 1 2.7636 -6.3092 -0.3534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786838515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:01 Heat of formation + Delta-G solvation = -102.440181 kcal Electronic energy + Delta-G solvation = -28322.013849 eV Core-core repulsion = 24668.829262 eV Total energy + Delta-G solvation = -3653.184587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54548 -39.12256 -37.01573 -35.78635 -34.22242 -33.58499 -32.35156 -30.76438 -30.55279 -28.25192 -26.94480 -25.85071 -23.87828 -22.98863 -22.21709 -20.86468 -20.14567 -19.64417 -17.92518 -17.46491 -17.07645 -16.43736 -15.94943 -15.59932 -15.21560 -14.81376 -14.58049 -14.36912 -14.07025 -13.92427 -13.50627 -13.34558 -12.98083 -12.71677 -12.51933 -12.43576 -12.16318 -12.08469 -11.95058 -11.70697 -11.53620 -11.44666 -11.15959 -11.01720 -10.86263 -10.73094 -10.67577 -10.56599 -10.32926 -10.21690 -10.13648 -9.85113 -9.62451 -9.60592 -9.48746 -8.77381 -8.65920 -7.71157 -6.22155 -4.23448 2.84574 3.15179 3.22141 3.24884 3.35961 3.67294 3.85145 4.24764 4.82746 4.87107 4.93832 5.09080 5.12061 5.18673 5.30377 5.33658 5.40638 5.45901 5.52618 5.65282 5.75881 5.76880 5.80550 5.87475 5.90546 6.00833 6.03383 6.07993 6.16519 6.19423 6.25576 6.28596 6.32038 6.37986 6.42338 6.56981 6.58546 6.62098 6.64181 6.69342 6.80439 6.85120 7.38564 7.41208 7.44283 8.16508 8.40404 8.41064 8.83369 8.97058 9.36984 10.90569 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.005570 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.981717 B = 5025.493229 C = 6272.361210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.123 3.877 5 N -0.586 5.586 6 C 0.200 3.800 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.077 3.923 10 N -0.889 5.889 11 Si 0.867 3.133 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.532 3.468 16 O -0.569 6.569 17 C -0.111 4.111 18 H 0.118 0.882 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.104 4.104 22 C -0.127 4.127 23 H 0.139 0.861 24 C 0.524 3.476 25 N -0.861 5.861 26 O -0.549 6.549 27 C -0.073 4.073 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.266 0.734 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.399 0.601 47 H 0.395 0.605 48 H 0.071 0.929 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 4.640 -16.882 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.315 5.315 6 C 0.079 3.921 7 C -0.580 4.580 8 H 0.096 0.904 9 C -0.126 4.126 10 N -0.527 5.527 11 Si 0.694 3.306 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.188 1.188 15 C 0.322 3.678 16 O -0.451 6.451 17 C -0.132 4.132 18 H 0.136 0.864 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.142 4.142 22 C -0.147 4.147 23 H 0.156 0.844 24 C 0.310 3.690 25 N -0.425 5.425 26 O -0.425 6.425 27 C -0.111 4.111 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.227 0.773 47 H 0.225 0.775 48 H 0.090 0.910 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.118 4.174 -16.374 16.934 hybrid contribution -0.932 0.103 -0.349 1.001 sum 0.186 4.276 -16.723 17.262 Atomic orbital electron populations 1.21877 0.95357 1.02120 1.00978 1.21486 0.96005 0.95943 0.99503 1.21747 1.00939 0.95875 1.01402 1.21380 1.00328 0.81325 0.96990 1.47870 1.26334 1.07109 1.50208 1.20082 0.82976 0.95836 0.93217 1.21412 0.96397 1.40473 0.99703 0.90429 1.24871 0.98680 0.94459 0.94638 1.69895 1.33666 1.39750 1.09373 0.86986 0.85507 0.79271 0.78876 1.19717 1.20913 1.18832 1.20353 0.83117 0.87380 0.76964 1.90418 1.23839 1.80047 1.50777 1.21364 0.96226 0.93316 1.02252 0.86428 1.21700 0.97217 1.02149 0.94400 1.21549 0.97629 0.99755 0.96633 1.21475 0.94757 1.00599 0.97349 1.21844 0.93102 1.03637 0.96140 0.84360 1.20989 0.83534 0.84055 0.80440 1.43929 1.41437 1.36033 1.21053 1.90706 1.61545 1.29799 1.60478 1.21075 0.97826 0.97967 0.94248 0.92198 0.92760 0.93499 0.91246 0.92721 0.93014 0.92704 0.90516 0.91008 0.94660 0.94476 0.92362 0.91072 0.90301 0.91844 0.91683 0.91905 0.92228 0.77273 0.77532 0.91033 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.38 37.16 0.31 -1.65 16 2 C -0.11 -1.53 3.08 -90.62 -0.28 -1.81 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C 0.12 2.10 4.79 -4.04 -0.02 2.08 16 5 N -0.59 -11.18 2.21 -175.06 -0.39 -11.56 16 6 C 0.20 4.16 2.73 -5.20 -0.01 4.15 16 7 C -0.54 -13.90 9.09 -34.44 -0.31 -14.21 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -25.63 13.96 55.43 0.77 -24.85 16 11 Si 0.87 19.29 27.47 -169.99 -4.67 14.62 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 15 C 0.53 10.13 5.42 -10.99 -0.06 10.07 16 16 O -0.57 -11.39 13.01 5.56 0.07 -11.32 16 17 C -0.11 -1.94 2.20 -91.77 -0.20 -2.14 16 18 H 0.12 2.36 7.03 -51.93 -0.36 1.99 16 19 C -0.12 -1.72 5.16 -26.73 -0.14 -1.86 16 20 C -0.12 -1.47 5.70 -26.74 -0.15 -1.62 16 21 C -0.10 -1.22 5.10 -26.73 -0.14 -1.35 16 22 C -0.13 -1.84 2.24 -91.77 -0.21 -2.05 16 23 H 0.14 2.22 5.19 -51.93 -0.27 1.95 16 24 C 0.52 7.70 7.43 -10.98 -0.08 7.61 16 25 N -0.86 -8.55 8.77 31.22 0.27 -8.28 16 26 O -0.55 -10.33 16.82 5.56 0.09 -10.24 16 27 C -0.07 -1.24 3.74 -26.73 -0.10 -1.34 16 28 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 36 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 37 H 0.04 0.73 6.02 -51.93 -0.31 0.42 16 38 H 0.04 0.75 3.77 -51.93 -0.20 0.55 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.21 5.38 -51.93 -0.28 0.93 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.89 7.22 -51.93 -0.37 0.51 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 46 H 0.40 2.87 8.25 -40.82 -0.34 2.54 16 47 H 0.39 3.37 8.93 -40.82 -0.36 3.01 16 48 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 49 H 0.07 1.13 8.10 -51.93 -0.42 0.70 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -31.09 369.94 -7.68 -38.77 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -8.27 Total: 10.77 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.15 Total: -3.49 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.66 Total: -44.69 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.17 Total: -21.56 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.67 Total: 14.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.09 -7.68 -38.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.668 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds