Wall clock time and date at job start Fri Apr 10 2020 22:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47207 * 2 1 4 4 C 1.53004 * 109.47269 * 119.99919 * 2 1 3 5 5 N 1.46501 * 109.46931 * 64.99803 * 4 2 1 6 6 C 1.46498 * 119.99919 * 264.20305 * 5 4 2 7 7 C 1.50697 * 109.47392 * 262.65092 * 6 5 4 8 8 H 1.08006 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00514 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00015 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99549 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47337 * 89.99680 * 11 9 7 13 13 H 1.48500 * 109.46930 * 209.99672 * 11 9 7 14 14 H 1.48500 * 109.47234 * 329.99555 * 11 9 7 15 15 C 1.34774 * 119.99956 * 84.20552 * 5 4 2 16 16 O 1.21280 * 120.00071 * 4.88648 * 15 5 4 17 17 C 1.50698 * 119.99849 * 184.87720 * 15 5 4 18 18 H 1.08991 * 109.47610 * 309.34872 * 17 15 5 19 19 C 1.53005 * 109.46701 * 69.34964 * 17 15 5 20 20 C 1.52993 * 109.47334 * 59.99684 * 19 17 15 21 21 C 1.52997 * 109.47198 * 60.00348 * 20 19 17 22 22 C 1.53002 * 109.46948 * 299.99567 * 21 20 19 23 23 H 1.09002 * 109.47461 * 300.00552 * 22 21 20 24 24 C 1.50701 * 109.47440 * 180.02562 * 22 21 20 25 25 N 1.34780 * 119.99901 * 59.99754 * 24 22 21 26 26 O 1.21278 * 119.99896 * 240.00850 * 24 22 21 27 27 C 1.52997 * 109.47320 * 189.34303 * 17 15 5 28 28 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47307 * 300.00504 * 1 2 3 30 30 H 1.09005 * 109.46997 * 60.00351 * 1 2 3 31 31 H 1.09004 * 109.47307 * 239.99496 * 2 1 3 32 32 H 1.09007 * 109.47139 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47310 * 299.99615 * 3 2 1 34 34 H 1.08994 * 109.47540 * 59.99704 * 3 2 1 35 35 H 1.09000 * 109.46908 * 304.99927 * 4 2 1 36 36 H 1.08994 * 109.47224 * 185.00147 * 4 2 1 37 37 H 1.09002 * 109.47683 * 22.64845 * 6 5 4 38 38 H 1.09001 * 109.47474 * 142.65293 * 6 5 4 39 39 H 0.97006 * 119.99688 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47278 * 180.02562 * 19 17 15 41 41 H 1.09002 * 109.46869 * 299.99075 * 19 17 15 42 42 H 1.09004 * 109.47080 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47283 * 299.99422 * 20 19 17 44 44 H 1.08995 * 109.47676 * 59.99752 * 21 20 19 45 45 H 1.09005 * 109.47280 * 180.02562 * 21 20 19 46 46 H 0.97003 * 119.99573 * 0.02562 * 25 24 22 47 47 H 0.96993 * 119.99854 * 179.97438 * 25 24 22 48 48 H 1.09000 * 109.47082 * 60.00179 * 27 17 15 49 49 H 1.08995 * 109.47676 * 180.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4374 -2.5877 1.8711 7 6 0.8006 -3.1673 3.2139 8 1 1.8334 -3.1945 3.5288 9 6 -0.1854 -3.6628 4.0405 10 7 0.1317 -4.1690 5.2121 11 14 -1.9715 -3.6163 3.4955 12 1 -2.2995 -4.8680 2.7667 13 1 -2.8494 -3.4926 4.6869 14 1 -2.1856 -2.4514 2.5998 15 6 2.4136 -3.0130 0.5107 16 8 3.4646 -2.6554 0.0224 17 6 1.9589 -4.4415 0.3573 18 1 1.6887 -4.8437 1.3336 19 6 0.7428 -4.4928 -0.5698 20 6 1.1221 -3.9283 -1.9402 21 6 2.2558 -4.7629 -2.5396 22 6 3.4719 -4.7115 -1.6126 23 1 3.8008 -3.6782 -1.5016 24 6 4.5888 -5.5330 -2.2032 25 7 5.0891 -5.2182 -3.4144 26 8 5.0373 -6.4774 -1.5886 27 6 3.0926 -5.2760 -0.2420 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.2386 -1.7440 2.0104 38 1 -0.0535 -3.3506 1.2669 39 1 -0.5620 -4.5173 5.7938 40 1 0.4136 -5.5260 -0.6804 41 1 -0.0649 -3.8984 -0.1427 42 1 0.2556 -3.9645 -2.6006 43 1 1.4509 -2.8950 -1.8293 44 1 1.9269 -5.7961 -2.6506 45 1 2.5263 -4.3604 -3.5158 46 1 4.7305 -4.4626 -3.9058 47 1 5.8083 -5.7467 -3.7943 48 1 3.9590 -5.2395 0.4184 49 1 2.7636 -6.3092 -0.3534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786838515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:00 Heat of formation + Delta-G solvation = -123.719566 kcal Electronic energy + Delta-G solvation = -28322.936593 eV Core-core repulsion = 24668.829262 eV Total energy + Delta-G solvation = -3654.107331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90430 -40.42239 -38.27284 -37.18664 -35.70629 -34.69273 -34.23066 -31.95015 -31.74540 -30.04352 -27.95852 -27.23866 -25.15782 -24.55108 -23.61266 -22.07012 -21.29942 -20.83034 -19.42329 -19.10297 -18.48006 -17.65531 -17.39028 -17.01520 -16.48991 -16.32054 -15.85917 -15.64512 -15.54892 -15.05410 -14.84529 -14.68930 -14.29906 -14.22634 -13.97742 -13.67601 -13.43358 -13.23224 -13.19893 -13.02481 -12.93150 -12.84206 -12.64713 -12.39619 -12.16860 -12.02601 -11.96266 -11.79988 -11.73889 -11.58795 -11.52358 -11.39715 -11.06512 -10.77239 -10.72356 -10.60356 -10.17916 -9.30851 -8.28475 -6.35606 1.40678 1.42086 1.51727 1.68211 1.82426 2.34959 2.36351 2.66616 3.05655 3.62861 3.72041 3.78993 3.98370 4.06024 4.10586 4.22346 4.24162 4.28194 4.35742 4.46558 4.58057 4.62153 4.67977 4.72563 4.78443 4.82914 4.87372 4.89695 4.98915 5.01206 5.06693 5.09857 5.11193 5.21257 5.26723 5.28352 5.32966 5.34377 5.46071 5.46637 5.52624 5.53612 5.82217 5.94695 6.23479 6.48726 6.64922 6.74676 7.27124 7.39059 7.44138 8.88418 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.005570 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.981717 B = 5025.493229 C = 6272.361210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.137 4.137 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.212 3.788 7 C -0.542 4.542 8 H 0.021 0.979 9 C 0.017 3.983 10 N -0.946 5.946 11 Si 0.938 3.062 12 H -0.258 1.258 13 H -0.288 1.288 14 H -0.231 1.231 15 C 0.529 3.471 16 O -0.581 6.581 17 C -0.109 4.109 18 H 0.082 0.918 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.099 4.099 22 C -0.120 4.120 23 H 0.126 0.874 24 C 0.521 3.479 25 N -0.834 5.834 26 O -0.599 6.599 27 C -0.070 4.070 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.417 0.583 47 H 0.406 0.594 48 H 0.033 0.967 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 5.926 -20.781 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.195 4.195 4 C -0.005 4.005 5 N -0.319 5.319 6 C 0.091 3.909 7 C -0.580 4.580 8 H 0.039 0.961 9 C -0.182 4.182 10 N -0.586 5.586 11 Si 0.759 3.241 12 H -0.182 1.182 13 H -0.214 1.214 14 H -0.154 1.154 15 C 0.319 3.681 16 O -0.464 6.464 17 C -0.130 4.130 18 H 0.100 0.900 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.136 4.136 22 C -0.141 4.141 23 H 0.143 0.857 24 C 0.308 3.692 25 N -0.398 5.398 26 O -0.480 6.480 27 C -0.109 4.109 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.248 0.752 47 H 0.237 0.763 48 H 0.052 0.948 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.241 5.515 -20.347 21.118 hybrid contribution -0.005 -0.286 0.929 0.972 sum -1.247 5.230 -19.418 20.149 Atomic orbital electron populations 1.21855 0.94344 1.01702 1.02189 1.21378 0.96749 0.96761 0.97007 1.21719 1.00772 0.94342 1.02679 1.21544 0.99501 0.80632 0.98816 1.47896 1.26001 1.08092 1.49883 1.19892 0.83812 0.96358 0.90882 1.21593 0.93841 1.40488 1.02103 0.96093 1.25844 1.04235 0.93770 0.94336 1.70080 1.35501 1.41710 1.11288 0.85862 0.78311 0.81014 0.78870 1.18216 1.21402 1.15405 1.20624 0.82877 0.87898 0.76723 1.90412 1.24144 1.80426 1.51425 1.21317 0.98041 0.92113 1.01518 0.89956 1.21736 0.95167 1.03332 0.95087 1.21528 0.99019 0.98846 0.95537 1.21510 0.92865 1.01327 0.97922 1.21706 0.94791 1.02239 0.95318 0.85700 1.21010 0.83452 0.83409 0.81379 1.43654 1.40745 1.36077 1.19346 1.90692 1.63076 1.32057 1.62139 1.20988 0.96163 0.98292 0.95440 0.93374 0.92824 0.91019 0.91875 0.93060 0.90871 0.92254 0.91105 0.92617 0.93375 0.92563 0.92386 0.89551 0.90654 0.88596 0.92788 0.91121 0.88736 0.75208 0.76280 0.94841 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.38 71.98 0.60 -2.81 16 2 C -0.10 -2.60 3.08 -10.79 -0.03 -2.64 16 3 C -0.14 -2.89 9.19 71.98 0.66 -2.23 16 4 C 0.12 4.05 4.79 86.38 0.41 4.46 16 5 N -0.59 -22.84 2.21 -826.16 -1.83 -24.67 16 6 C 0.21 8.80 2.73 85.63 0.23 9.03 16 7 C -0.54 -29.02 9.09 25.60 0.23 -28.79 16 8 H 0.02 1.32 8.06 -2.91 -0.02 1.29 16 9 C 0.02 0.90 5.47 84.66 0.46 1.36 16 10 N -0.95 -57.00 13.96 21.45 0.30 -56.70 16 11 Si 0.94 39.14 27.47 68.60 1.88 41.02 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 14 H -0.23 -8.40 6.54 99.48 0.65 -7.75 16 15 C 0.53 20.66 5.42 87.66 0.48 21.13 16 16 O -0.58 -23.93 13.01 -3.03 -0.04 -23.97 16 17 C -0.11 -3.92 2.20 -11.54 -0.03 -3.94 16 18 H 0.08 3.53 7.03 -2.39 -0.02 3.51 16 19 C -0.12 -3.18 5.16 30.59 0.16 -3.02 16 20 C -0.11 -2.40 5.70 30.59 0.17 -2.22 16 21 C -0.10 -1.98 5.10 30.59 0.16 -1.82 16 22 C -0.12 -3.39 2.24 -11.54 -0.03 -3.41 16 23 H 0.13 3.95 5.19 -2.39 -0.01 3.94 16 24 C 0.52 14.89 7.43 87.66 0.65 15.54 16 25 N -0.83 -14.58 8.77 -173.53 -1.52 -16.10 16 26 O -0.60 -22.92 16.82 -3.02 -0.05 -22.97 16 27 C -0.07 -2.49 3.74 30.60 0.11 -2.37 16 28 H 0.05 1.26 6.47 -2.39 -0.02 1.24 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 36 H 0.06 2.06 7.54 -2.39 -0.02 2.04 16 37 H 0.05 1.90 6.02 -2.39 -0.01 1.89 16 38 H 0.06 2.17 3.77 -2.39 -0.01 2.16 16 39 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.08 2.12 5.38 -2.39 -0.01 2.11 16 42 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.05 1.31 7.22 -2.39 -0.02 1.29 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.09 1.28 7.56 -2.38 -0.02 1.27 16 46 H 0.42 4.53 8.25 -92.71 -0.76 3.77 16 47 H 0.41 5.98 8.93 -92.71 -0.83 5.15 16 48 H 0.03 1.39 8.10 -2.39 -0.02 1.37 16 49 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 Total: -1.00 -73.27 369.94 2.31 -70.96 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.69 Total: 34.16 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 4.25 Total: -1.73 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -3.05 Total: -97.46 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -0.09 Total: -46.95 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.88 Total: 41.02 kcal Total: -73.27 2.31 -70.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786838515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.763 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds