Wall clock time and date at job start Fri Apr 10 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47170 * 2 1 4 4 C 1.53007 * 109.46893 * 120.00013 * 2 1 3 5 5 N 1.46500 * 109.47175 * 64.99734 * 4 2 1 6 6 C 1.46498 * 120.00251 * 270.00250 * 5 4 2 7 7 C 1.50700 * 109.46844 * 269.99857 * 6 5 4 8 8 H 1.07997 * 119.99966 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99617 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99957 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99626 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47251 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47304 * 120.00041 * 11 9 7 14 14 H 1.48504 * 109.47198 * 240.00139 * 11 9 7 15 15 C 1.34776 * 119.99651 * 90.00203 * 5 4 2 16 16 O 1.21278 * 120.00042 * 180.02562 * 15 5 4 17 17 C 1.50701 * 120.00201 * 359.97438 * 15 5 4 18 18 C 1.53004 * 109.47196 * 180.02562 * 17 15 5 19 19 C 1.52997 * 109.46928 * 179.97438 * 18 17 15 20 20 C 1.52997 * 110.22014 * 300.70139 * 19 18 17 21 21 C 1.54487 * 110.24561 * 178.76913 * 19 18 17 22 22 C 1.54624 * 101.76438 * 215.50003 * 21 19 18 23 23 C 1.51274 * 104.19859 * 24.79967 * 22 21 19 24 24 O 1.21284 * 124.94311 * 163.75197 * 23 22 21 25 25 N 1.34623 * 110.14849 * 343.76772 * 23 22 21 26 26 H 1.08994 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47413 * 300.00399 * 1 2 3 28 28 H 1.09003 * 109.46533 * 60.00010 * 1 2 3 29 29 H 1.08997 * 109.46923 * 239.99707 * 2 1 3 30 30 H 1.09001 * 109.47174 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47118 * 299.99758 * 3 2 1 32 32 H 1.08997 * 109.47437 * 60.00021 * 3 2 1 33 33 H 1.08994 * 109.46782 * 304.99969 * 4 2 1 34 34 H 1.08999 * 109.47176 * 185.00124 * 4 2 1 35 35 H 1.08997 * 109.47187 * 30.00171 * 6 5 4 36 36 H 1.09002 * 109.46939 * 150.00055 * 6 5 4 37 37 H 0.97006 * 119.99493 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.46995 * 60.00517 * 17 15 5 39 39 H 1.08997 * 109.47190 * 300.00338 * 17 15 5 40 40 H 1.08999 * 109.46825 * 60.00292 * 18 17 15 41 41 H 1.08997 * 109.47228 * 300.00193 * 18 17 15 42 42 H 1.09002 * 109.47153 * 59.99948 * 20 19 18 43 43 H 1.09001 * 109.46832 * 300.00139 * 20 19 18 44 44 H 1.09004 * 109.47261 * 180.02562 * 20 19 18 45 45 H 1.09002 * 110.96417 * 333.61945 * 21 19 18 46 46 H 1.09002 * 110.96636 * 97.34236 * 21 19 18 47 47 H 1.09003 * 110.48375 * 143.48330 * 22 21 19 48 48 H 1.09000 * 110.48647 * 265.98208 * 22 21 19 49 49 H 0.97000 * 124.46439 * 179.53974 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1329 1.1907 6 6 0.3745 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2075 8 1 1.5506 -2.8637 3.6568 9 6 -0.4985 -3.3812 3.9575 10 7 -1.6908 -3.4745 3.4104 11 14 -0.2544 -3.8452 5.7504 12 1 1.1706 -3.6532 6.1218 13 1 -1.1098 -2.9837 6.6055 14 1 -0.6297 -5.2682 5.9489 15 6 2.4714 -3.0331 0.6117 16 8 2.1504 -4.2015 0.5627 17 6 3.7858 -2.5875 0.0242 18 6 4.5162 -3.7954 -0.5660 19 6 5.8502 -3.3429 -1.1630 20 6 5.6133 -2.2996 -2.2568 21 6 6.6174 -4.5547 -1.7373 22 6 8.0833 -4.1791 -1.4197 23 6 7.9781 -3.2404 -0.2380 24 8 8.8979 -2.9366 0.4919 25 7 6.7152 -2.7912 -0.1136 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2953 35 1 -0.3485 -1.7532 1.6918 36 1 0.0042 -3.4298 1.2092 37 1 -2.4436 -3.7840 3.9382 38 1 4.3989 -2.1377 0.8051 39 1 3.6027 -1.8545 -0.7615 40 1 3.9029 -4.2449 -1.3470 41 1 4.6993 -4.5287 0.2193 42 1 5.1022 -1.4363 -1.8308 43 1 4.9985 -2.7333 -3.0454 44 1 6.5706 -1.9864 -2.6736 45 1 6.3312 -5.4747 -1.2275 46 1 6.4605 -4.6418 -2.8124 47 1 8.6552 -5.0674 -1.1516 48 1 8.5408 -3.6746 -2.2707 49 1 6.4149 -2.1824 0.5793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793244764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:03 Heat of formation + Delta-G solvation = -97.243364 kcal Electronic energy + Delta-G solvation = -27064.576491 eV Core-core repulsion = 23411.617255 eV Total energy + Delta-G solvation = -3652.959236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83554 -39.25484 -37.35966 -36.38336 -33.66949 -32.99399 -32.27291 -31.54488 -29.59697 -27.80801 -26.87013 -26.13818 -25.38247 -23.76525 -22.13279 -20.96424 -20.33447 -20.06314 -18.27070 -17.20667 -16.55518 -16.30904 -16.09355 -15.66409 -15.34112 -14.81941 -14.53892 -14.36639 -14.19489 -13.88122 -13.75440 -13.31691 -13.16672 -12.93692 -12.74781 -12.51467 -12.39351 -12.35348 -12.11078 -11.98344 -11.71835 -11.52716 -11.35076 -11.19451 -11.03144 -10.96985 -10.92705 -10.76836 -10.68721 -10.43967 -10.28406 -10.13889 -9.99438 -9.58234 -9.27514 -8.90814 -8.43660 -7.64507 -6.05621 -4.09769 2.47164 3.19158 3.28494 3.35912 3.38356 3.43440 3.85313 4.09792 4.23357 4.42622 4.50270 4.73678 4.76496 5.00256 5.03611 5.09149 5.15797 5.19125 5.28540 5.29429 5.33983 5.39874 5.45713 5.55003 5.61040 5.66496 5.71598 5.71998 5.79525 5.83322 5.92117 6.06092 6.07988 6.12701 6.15550 6.26444 6.27256 6.52156 6.66008 6.69447 6.91462 7.08518 7.43087 7.54915 7.91153 8.12815 8.23515 8.41953 8.89515 9.08709 9.55396 11.02235 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.003864 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.664276 B = 7245.280078 C = 8399.776854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.115 3.885 5 N -0.594 5.594 6 C 0.242 3.758 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.504 3.496 16 O -0.543 6.543 17 C -0.143 4.143 18 C -0.104 4.104 19 C 0.154 3.846 20 C -0.159 4.159 21 C -0.124 4.124 22 C -0.156 4.156 23 C 0.519 3.481 24 O -0.542 6.542 25 N -0.720 5.720 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.985 5.810 -13.904 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.009 4.009 5 N -0.325 5.325 6 C 0.123 3.877 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.290 3.710 16 O -0.421 6.421 17 C -0.184 4.184 18 C -0.143 4.143 19 C 0.068 3.932 20 C -0.217 4.217 21 C -0.162 4.162 22 C -0.196 4.196 23 C 0.306 3.694 24 O -0.419 6.419 25 N -0.376 5.376 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 13.123 5.215 -13.572 19.586 hybrid contribution -0.231 0.168 1.408 1.437 sum 12.892 5.383 -12.164 18.525 Atomic orbital electron populations 1.21928 0.94597 1.03091 1.00978 1.21581 0.97137 0.95745 0.98798 1.21783 1.00479 0.96063 1.01829 1.21534 0.98922 0.82487 0.97969 1.48209 1.21816 1.06267 1.56228 1.19392 0.78762 0.96321 0.93230 1.21487 0.95039 1.44284 0.95588 0.92567 1.24917 0.95072 0.95435 0.98628 1.69939 0.99798 1.47137 1.36488 0.86483 0.78160 0.78256 0.84768 1.19850 1.20979 1.20893 1.20285 0.85551 0.86150 0.78992 1.90669 1.75241 1.17488 1.58677 1.21796 0.95828 0.99569 1.01168 1.21663 0.93189 0.97679 1.01721 1.21142 0.90957 0.93474 0.87672 1.22244 1.02241 0.99133 0.98087 1.22714 0.93081 0.97777 1.02582 1.22342 0.98685 1.00543 0.98033 1.20941 0.82284 0.80783 0.85431 1.90753 1.41398 1.61321 1.48409 1.46511 1.10130 1.49210 1.31727 0.91248 0.92516 0.93648 0.91648 0.92971 0.92837 0.92478 0.90025 0.91840 0.94212 0.94133 0.92818 0.90086 0.89223 0.89519 0.90264 0.91540 0.90863 0.92259 0.89436 0.88977 0.88140 0.87970 0.75169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.18 37.16 0.30 -1.85 16 2 C -0.11 -1.43 3.12 -90.62 -0.28 -1.72 16 3 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 4 C 0.12 1.75 4.70 -4.04 -0.02 1.73 16 5 N -0.59 -11.76 2.28 -175.06 -0.40 -12.15 16 6 C 0.24 6.07 4.23 -5.20 -0.02 6.05 16 7 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 11 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.50 9.67 7.67 -10.99 -0.08 9.58 16 16 O -0.54 -12.90 15.56 5.56 0.09 -12.81 16 17 C -0.14 -1.82 3.76 -27.88 -0.10 -1.93 16 18 C -0.10 -1.19 3.70 -26.73 -0.10 -1.29 16 19 C 0.15 1.32 0.87 -130.90 -0.11 1.21 16 20 C -0.16 -1.11 8.41 37.16 0.31 -0.80 16 21 C -0.12 -0.88 6.21 -25.10 -0.16 -1.04 16 22 C -0.16 -1.23 6.86 -26.75 -0.18 -1.41 16 23 C 0.52 6.14 8.44 -10.77 -0.09 6.04 16 24 O -0.54 -8.77 18.03 5.55 0.10 -8.67 16 25 N -0.72 -7.30 5.40 -46.57 -0.25 -7.55 16 26 H 0.07 1.21 5.89 -51.93 -0.31 0.91 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.80 7.30 -51.93 -0.38 0.42 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 35 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 36 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.08 0.94 6.15 -51.93 -0.32 0.62 16 39 H 0.09 0.94 5.59 -51.93 -0.29 0.65 16 40 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.07 0.47 6.49 -51.93 -0.34 0.14 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.66 7.91 -51.93 -0.41 0.25 16 46 H 0.09 0.47 7.89 -51.93 -0.41 0.06 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.41 4.09 7.68 -40.82 -0.31 3.78 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -34.67 384.04 -7.99 -42.65 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.41 Total: 1.29 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.62 Total: 0.15 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.09 Total: -45.20 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.19 Total: -21.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.67 -7.99 -42.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793244764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.592 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds