Wall clock time and date at job start Fri Apr 10 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47170 * 2 1 4 4 C 1.53007 * 109.46893 * 120.00013 * 2 1 3 5 5 N 1.46500 * 109.47175 * 64.99734 * 4 2 1 6 6 C 1.46498 * 120.00251 * 270.00250 * 5 4 2 7 7 C 1.50700 * 109.46844 * 269.99857 * 6 5 4 8 8 H 1.07997 * 119.99966 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99617 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99957 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99626 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47251 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47304 * 120.00041 * 11 9 7 14 14 H 1.48504 * 109.47198 * 240.00139 * 11 9 7 15 15 C 1.34776 * 119.99651 * 90.00203 * 5 4 2 16 16 O 1.21278 * 120.00042 * 180.02562 * 15 5 4 17 17 C 1.50701 * 120.00201 * 359.97438 * 15 5 4 18 18 C 1.53004 * 109.47196 * 180.02562 * 17 15 5 19 19 C 1.52997 * 109.46928 * 179.97438 * 18 17 15 20 20 C 1.52997 * 110.22014 * 300.70139 * 19 18 17 21 21 C 1.54487 * 110.24561 * 178.76913 * 19 18 17 22 22 C 1.54624 * 101.76438 * 215.50003 * 21 19 18 23 23 C 1.51274 * 104.19859 * 24.79967 * 22 21 19 24 24 O 1.21284 * 124.94311 * 163.75197 * 23 22 21 25 25 N 1.34623 * 110.14849 * 343.76772 * 23 22 21 26 26 H 1.08994 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47413 * 300.00399 * 1 2 3 28 28 H 1.09003 * 109.46533 * 60.00010 * 1 2 3 29 29 H 1.08997 * 109.46923 * 239.99707 * 2 1 3 30 30 H 1.09001 * 109.47174 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47118 * 299.99758 * 3 2 1 32 32 H 1.08997 * 109.47437 * 60.00021 * 3 2 1 33 33 H 1.08994 * 109.46782 * 304.99969 * 4 2 1 34 34 H 1.08999 * 109.47176 * 185.00124 * 4 2 1 35 35 H 1.08997 * 109.47187 * 30.00171 * 6 5 4 36 36 H 1.09002 * 109.46939 * 150.00055 * 6 5 4 37 37 H 0.97006 * 119.99493 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.46995 * 60.00517 * 17 15 5 39 39 H 1.08997 * 109.47190 * 300.00338 * 17 15 5 40 40 H 1.08999 * 109.46825 * 60.00292 * 18 17 15 41 41 H 1.08997 * 109.47228 * 300.00193 * 18 17 15 42 42 H 1.09002 * 109.47153 * 59.99948 * 20 19 18 43 43 H 1.09001 * 109.46832 * 300.00139 * 20 19 18 44 44 H 1.09004 * 109.47261 * 180.02562 * 20 19 18 45 45 H 1.09002 * 110.96417 * 333.61945 * 21 19 18 46 46 H 1.09002 * 110.96636 * 97.34236 * 21 19 18 47 47 H 1.09003 * 110.48375 * 143.48330 * 22 21 19 48 48 H 1.09000 * 110.48647 * 265.98208 * 22 21 19 49 49 H 0.97000 * 124.46439 * 179.53974 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1329 1.1907 6 6 0.3745 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2075 8 1 1.5506 -2.8637 3.6568 9 6 -0.4985 -3.3812 3.9575 10 7 -1.6908 -3.4745 3.4104 11 14 -0.2544 -3.8452 5.7504 12 1 1.1706 -3.6532 6.1218 13 1 -1.1098 -2.9837 6.6055 14 1 -0.6297 -5.2682 5.9489 15 6 2.4714 -3.0331 0.6117 16 8 2.1504 -4.2015 0.5627 17 6 3.7858 -2.5875 0.0242 18 6 4.5162 -3.7954 -0.5660 19 6 5.8502 -3.3429 -1.1630 20 6 5.6133 -2.2996 -2.2568 21 6 6.6174 -4.5547 -1.7373 22 6 8.0833 -4.1791 -1.4197 23 6 7.9781 -3.2404 -0.2380 24 8 8.8979 -2.9366 0.4919 25 7 6.7152 -2.7912 -0.1136 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2953 35 1 -0.3485 -1.7532 1.6918 36 1 0.0042 -3.4298 1.2092 37 1 -2.4436 -3.7840 3.9382 38 1 4.3989 -2.1377 0.8051 39 1 3.6027 -1.8545 -0.7615 40 1 3.9029 -4.2449 -1.3470 41 1 4.6993 -4.5287 0.2193 42 1 5.1022 -1.4363 -1.8308 43 1 4.9985 -2.7333 -3.0454 44 1 6.5706 -1.9864 -2.6736 45 1 6.3312 -5.4747 -1.2275 46 1 6.4605 -4.6418 -2.8124 47 1 8.6552 -5.0674 -1.1516 48 1 8.5408 -3.6746 -2.2707 49 1 6.4149 -2.1824 0.5793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793244764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:03 Heat of formation + Delta-G solvation = -120.643189 kcal Electronic energy + Delta-G solvation = -27065.591184 eV Core-core repulsion = 23411.617255 eV Total energy + Delta-G solvation = -3653.973929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68485 -40.71530 -38.34145 -37.73900 -35.41182 -34.15035 -33.95066 -32.25911 -30.67447 -29.34339 -27.95759 -27.08070 -26.72463 -25.12906 -23.55450 -21.76690 -21.42637 -20.91358 -19.69320 -18.68476 -18.22754 -17.40837 -17.22509 -17.02032 -16.57261 -16.24742 -15.84796 -15.54518 -15.23226 -14.98977 -14.71867 -14.40051 -14.35584 -14.15144 -13.68402 -13.68028 -13.46520 -13.36935 -13.17319 -13.07357 -12.98317 -12.94538 -12.71612 -12.64176 -12.39987 -12.16984 -12.08555 -11.99224 -11.80250 -11.75641 -11.53666 -11.48615 -11.44342 -10.91769 -10.63344 -10.53313 -10.10775 -9.34719 -8.22708 -6.36789 1.33138 1.35482 1.46733 1.59737 1.88684 2.31033 2.42066 2.47808 3.06394 3.37277 3.49429 3.70211 3.87115 3.94466 4.03298 4.07367 4.17968 4.20987 4.32551 4.34935 4.52799 4.59918 4.70059 4.71673 4.79713 4.85391 4.94316 4.96252 4.99516 5.02243 5.07327 5.08406 5.15386 5.16695 5.19238 5.24847 5.27527 5.31857 5.47158 5.47480 5.51925 5.60978 5.90015 5.90809 6.08886 6.09407 6.71555 6.86055 7.26651 7.29172 7.54375 8.83648 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.003864 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.664276 B = 7245.280078 C = 8399.776854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.110 3.890 5 N -0.599 5.599 6 C 0.261 3.739 7 C -0.542 4.542 8 H 0.048 0.952 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.962 3.038 12 H -0.270 1.270 13 H -0.269 1.269 14 H -0.282 1.282 15 C 0.492 3.508 16 O -0.599 6.599 17 C -0.128 4.128 18 C -0.099 4.099 19 C 0.160 3.840 20 C -0.157 4.157 21 C -0.120 4.120 22 C -0.147 4.147 23 C 0.509 3.491 24 O -0.595 6.595 25 N -0.717 5.717 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.034 0.966 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.122 0.878 47 H 0.106 0.894 48 H 0.127 0.873 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.868 7.396 -15.347 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.194 4.194 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.067 0.933 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.787 3.213 12 H -0.194 1.194 13 H -0.194 1.194 14 H -0.208 1.208 15 C 0.281 3.719 16 O -0.481 6.481 17 C -0.167 4.167 18 C -0.138 4.138 19 C 0.074 3.926 20 C -0.215 4.215 21 C -0.157 4.157 22 C -0.187 4.187 23 C 0.297 3.703 24 O -0.476 6.476 25 N -0.371 5.371 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.052 0.948 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.140 0.860 47 H 0.124 0.876 48 H 0.145 0.855 49 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 14.999 6.846 -15.041 22.317 hybrid contribution -0.896 -0.334 1.843 2.076 sum 14.103 6.512 -13.198 20.384 Atomic orbital electron populations 1.21898 0.96452 1.00607 1.01575 1.21526 0.95460 0.97701 0.97708 1.21733 1.01842 0.93454 1.02400 1.21847 1.00971 0.79677 0.98805 1.48210 1.20193 1.08639 1.55869 1.18795 0.81421 0.94210 0.91628 1.21784 0.94741 1.44539 0.97013 0.93331 1.25784 0.94784 0.95256 1.03114 1.70050 1.00589 1.47764 1.38225 0.85456 0.78351 0.77966 0.79563 1.19448 1.19406 1.20779 1.21466 0.87141 0.85241 0.78035 1.90636 1.76759 1.19980 1.60741 1.21796 0.91879 1.00818 1.02211 1.21602 0.94733 0.96544 1.00889 1.21196 0.89004 0.94847 0.87538 1.22254 1.03281 0.98442 0.97541 1.22782 0.92063 0.96637 1.04264 1.22376 0.99398 0.99939 0.96986 1.21627 0.81949 0.80831 0.85866 1.90721 1.43038 1.63307 1.50535 1.46631 1.10032 1.48578 1.31865 0.95198 0.93590 0.91383 0.90402 0.90733 0.91386 0.92874 0.91722 0.88346 0.94835 0.99027 0.92490 0.88367 0.85833 0.89703 0.93077 0.91246 0.89432 0.91088 0.90215 0.85995 0.87606 0.85535 0.75354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.18 71.98 0.59 -3.68 16 2 C -0.10 -2.43 3.12 -10.79 -0.03 -2.47 16 3 C -0.14 -2.23 9.19 71.98 0.66 -1.56 16 4 C 0.11 3.20 4.70 86.38 0.41 3.61 16 5 N -0.60 -24.25 2.28 -826.16 -1.88 -26.13 16 6 C 0.26 13.85 4.23 85.63 0.36 14.21 16 7 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.56 5.46 84.66 0.46 1.02 16 10 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 11 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 C 0.49 19.15 7.67 87.66 0.67 19.82 16 16 O -0.60 -29.88 15.56 -3.02 -0.05 -29.93 16 17 C -0.13 -3.00 3.76 29.85 0.11 -2.89 16 18 C -0.10 -2.14 3.70 30.59 0.11 -2.03 16 19 C 0.16 2.31 0.87 4.06 0.00 2.31 16 20 C -0.16 -1.52 8.41 71.98 0.61 -0.91 16 21 C -0.12 -1.35 6.21 31.65 0.20 -1.16 16 22 C -0.15 -1.93 6.86 30.58 0.21 -1.72 16 23 C 0.51 11.31 8.44 87.86 0.74 12.05 16 24 O -0.59 -19.13 18.03 -3.04 -0.05 -19.19 16 25 N -0.72 -13.11 5.40 -419.71 -2.27 -15.38 16 26 H 0.03 1.08 5.89 -2.39 -0.01 1.07 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.65 7.30 -2.39 -0.02 1.63 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 34 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 35 H 0.03 1.80 5.98 -2.39 -0.01 1.79 16 36 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 37 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 38 H 0.10 2.02 6.15 -2.39 -0.01 2.00 16 39 H 0.12 2.11 5.59 -2.39 -0.01 2.10 16 40 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 42 H 0.07 0.65 6.49 -2.39 -0.02 0.63 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.08 1.06 7.91 -2.39 -0.02 1.04 16 46 H 0.12 0.71 7.89 -2.39 -0.02 0.69 16 47 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.41 7.38 7.68 -92.71 -0.71 6.67 16 Total: -1.00 -81.77 384.04 3.62 -78.15 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.22 Total: 15.34 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.34 Total: 5.45 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -3.87 Total: -97.37 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.10 Total: -49.12 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -81.77 3.62 -78.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793244764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.497 kcal (2) G-P(sol) polarization free energy of solvation -81.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds