Wall clock time and date at job start Fri Apr 10 2020 22:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47148 * 2 1 4 4 C 1.53004 * 109.46813 * 119.99765 * 2 1 3 5 5 N 1.46503 * 109.47040 * 65.00180 * 4 2 1 6 6 C 1.46505 * 119.99741 * 269.99659 * 5 4 2 7 7 C 1.50695 * 109.47091 * 270.00069 * 6 5 4 8 8 H 1.07999 * 120.00199 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99833 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99862 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46969 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47144 * 120.00020 * 11 9 7 14 14 H 1.48505 * 109.47028 * 240.00351 * 11 9 7 15 15 C 1.34769 * 120.00411 * 89.99771 * 5 4 2 16 16 O 1.21281 * 120.00304 * 180.02562 * 15 5 4 17 17 C 1.50709 * 119.99797 * 359.97438 * 15 5 4 18 18 C 1.53001 * 109.46898 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47015 * 180.02562 * 18 17 15 20 20 C 1.52998 * 110.21688 * 63.06954 * 19 18 17 21 21 C 1.54479 * 110.24874 * 185.00300 * 19 18 17 22 22 C 1.54623 * 101.76734 * 144.41829 * 21 19 18 23 23 C 1.51282 * 104.31101 * 335.13584 * 22 21 19 24 24 O 1.21281 * 124.94192 * 196.29810 * 23 22 21 25 25 N 1.34735 * 109.93792 * 16.31290 * 23 22 21 26 26 H 1.09000 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47308 * 300.00509 * 1 2 3 28 28 H 1.09004 * 109.47238 * 59.99728 * 1 2 3 29 29 H 1.08998 * 109.46783 * 239.99464 * 2 1 3 30 30 H 1.08998 * 109.46993 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47009 * 299.99794 * 3 2 1 32 32 H 1.08998 * 109.47716 * 60.00036 * 3 2 1 33 33 H 1.09000 * 109.47007 * 305.00019 * 4 2 1 34 34 H 1.09001 * 109.46729 * 184.99642 * 4 2 1 35 35 H 1.09000 * 109.46921 * 30.00296 * 6 5 4 36 36 H 1.09003 * 109.47070 * 150.00012 * 6 5 4 37 37 H 0.97004 * 120.00293 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46451 * 60.00183 * 17 15 5 39 39 H 1.08999 * 109.47079 * 300.00299 * 17 15 5 40 40 H 1.08999 * 109.46799 * 60.00353 * 18 17 15 41 41 H 1.08999 * 109.47507 * 300.00045 * 18 17 15 42 42 H 1.09001 * 109.47313 * 181.22979 * 20 19 18 43 43 H 1.09000 * 109.47427 * 301.23216 * 20 19 18 44 44 H 1.09006 * 109.47062 * 61.22815 * 20 19 18 45 45 H 1.08994 * 110.96846 * 26.29266 * 21 19 18 46 46 H 1.09004 * 110.96814 * 262.53912 * 21 19 18 47 47 H 1.09002 * 110.48860 * 93.88058 * 22 21 19 48 48 H 1.08998 * 110.48497 * 216.38951 * 22 21 19 49 49 H 0.97003 * 124.30433 * 180.38606 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.3744 -2.5659 1.7614 7 6 0.5715 -2.9407 3.2076 8 1 1.5507 -2.8645 3.6567 9 6 -0.4985 -3.3810 3.9576 10 7 -1.6908 -3.4743 3.4107 11 14 -0.2544 -3.8450 5.7505 12 1 1.1706 -3.6530 6.1219 13 1 -1.1097 -2.9834 6.6056 14 1 -0.6297 -5.2680 5.9491 15 6 2.4713 -3.0331 0.6117 16 8 2.1503 -4.2016 0.5628 17 6 3.7857 -2.5875 0.0241 18 6 4.5166 -3.7957 -0.5649 19 6 5.8512 -3.3435 -1.1609 20 6 6.7556 -2.7780 -0.0640 21 6 6.5475 -4.5255 -1.8712 22 6 7.2222 -3.8197 -3.0701 23 6 6.3883 -2.5768 -3.2900 24 8 6.4049 -1.8979 -4.2948 25 7 5.6262 -2.3369 -2.2050 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6768 1.9564 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 -0.3485 -1.7531 1.6919 36 1 0.0041 -3.4297 1.2093 37 1 -2.4435 -3.7845 3.9382 38 1 4.3988 -2.1377 0.8051 39 1 3.6026 -1.8545 -0.7615 40 1 3.9036 -4.2459 -1.3457 41 1 4.6998 -4.5283 0.2211 42 1 7.6934 -2.4398 -0.5046 43 1 6.2578 -1.9378 0.4201 44 1 6.9598 -3.5536 0.6743 45 1 5.8181 -5.2606 -2.2112 46 1 7.2910 -4.9876 -1.2217 47 1 8.2500 -3.5513 -2.8258 48 1 7.1953 -4.4583 -3.9531 49 1 5.0076 -1.5940 -2.1248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793244765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:05 Heat of formation + Delta-G solvation = -97.245387 kcal Electronic energy + Delta-G solvation = -27094.733151 eV Core-core repulsion = 23441.773827 eV Total energy + Delta-G solvation = -3652.959324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83708 -39.25082 -37.37256 -36.37762 -33.66357 -32.98333 -32.27317 -31.55093 -29.62729 -27.80978 -26.85615 -26.10423 -25.38043 -23.77504 -22.14219 -20.98158 -20.31852 -20.07317 -18.25484 -17.21444 -16.57071 -16.31370 -16.13370 -15.65754 -15.26210 -14.85165 -14.53780 -14.34481 -14.13664 -14.03369 -13.74173 -13.29743 -13.19190 -12.87379 -12.69338 -12.62484 -12.38764 -12.22842 -12.11606 -12.02340 -11.72721 -11.53150 -11.33951 -11.18453 -11.07130 -10.95643 -10.91583 -10.75599 -10.68412 -10.44801 -10.27518 -10.14572 -10.00981 -9.58711 -9.28651 -8.90896 -8.44330 -7.64463 -6.05942 -4.10326 2.45079 3.17376 3.27473 3.34668 3.37284 3.42674 3.85193 4.09417 4.23399 4.41940 4.49819 4.73510 4.77284 4.97994 5.04882 5.11167 5.16728 5.22576 5.28368 5.29145 5.30311 5.42386 5.45935 5.56993 5.61185 5.65008 5.72750 5.74534 5.80440 5.85882 5.90808 6.07426 6.09873 6.13707 6.16037 6.25574 6.28876 6.53177 6.67143 6.68587 6.88531 7.08775 7.43389 7.54687 7.90624 8.10910 8.23101 8.42022 8.89012 9.08553 9.54731 11.01943 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.003717 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.876778 B = 7531.806640 C = 8686.055961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.116 3.884 5 N -0.594 5.594 6 C 0.242 3.758 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.504 3.496 16 O -0.543 6.543 17 C -0.143 4.143 18 C -0.104 4.104 19 C 0.155 3.845 20 C -0.159 4.159 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.520 3.480 24 O -0.541 6.541 25 N -0.720 5.720 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.969 4.569 -8.143 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.009 4.009 5 N -0.325 5.325 6 C 0.123 3.877 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.290 3.710 16 O -0.421 6.421 17 C -0.184 4.184 18 C -0.142 4.142 19 C 0.068 3.932 20 C -0.217 4.217 21 C -0.161 4.161 22 C -0.197 4.197 23 C 0.306 3.694 24 O -0.419 6.419 25 N -0.376 5.376 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 15.671 4.154 -8.648 18.375 hybrid contribution -0.321 0.209 1.225 1.283 sum 15.350 4.363 -7.424 17.600 Atomic orbital electron populations 1.21929 0.94585 1.03087 1.00992 1.21585 0.97175 0.95779 0.98789 1.21785 1.00476 0.96043 1.01853 1.21536 0.98918 0.82469 0.97949 1.48209 1.21803 1.06264 1.56235 1.19395 0.78771 0.96330 0.93233 1.21480 0.95026 1.44327 0.95567 0.92533 1.24925 0.95071 0.95459 0.98640 1.69935 0.99821 1.47066 1.36512 0.86476 0.78120 0.78247 0.84760 1.19851 1.21002 1.20905 1.20276 0.85536 0.86163 0.78983 1.90670 1.75201 1.17515 1.58688 1.21784 0.96035 0.99394 1.01138 1.21664 0.93313 0.97732 1.01512 1.21138 0.96067 0.87939 0.88030 1.22240 0.99206 1.02163 0.98107 1.22714 1.00316 0.96707 0.96393 1.22351 1.00394 0.96180 1.00746 1.20956 0.80002 0.86227 0.82195 1.90751 1.67645 1.53890 1.29569 1.46549 1.43877 1.30411 1.16780 0.91263 0.92505 0.93628 0.91717 0.92965 0.92807 0.92467 0.90004 0.91805 0.94222 0.94155 0.92805 0.89217 0.90139 0.90390 0.89400 0.92254 0.91582 0.90789 0.89452 0.88961 0.87984 0.88165 0.75263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.18 37.16 0.30 -1.92 16 2 C -0.11 -1.49 3.12 -90.62 -0.28 -1.77 16 3 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 4 C 0.12 1.76 4.70 -4.04 -0.02 1.74 16 5 N -0.59 -11.77 2.28 -175.05 -0.40 -12.17 16 6 C 0.24 6.07 4.23 -5.19 -0.02 6.05 16 7 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 11 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.50 9.68 7.67 -10.98 -0.08 9.60 16 16 O -0.54 -12.90 15.56 5.56 0.09 -12.82 16 17 C -0.14 -1.83 3.80 -27.88 -0.11 -1.93 16 18 C -0.10 -1.19 3.71 -26.73 -0.10 -1.29 16 19 C 0.15 1.33 0.87 -130.90 -0.11 1.21 16 20 C -0.16 -1.17 8.53 37.16 0.32 -0.85 16 21 C -0.12 -0.88 6.21 -25.10 -0.16 -1.03 16 22 C -0.16 -1.21 6.85 -26.74 -0.18 -1.39 16 23 C 0.52 5.96 8.46 -10.72 -0.09 5.87 16 24 O -0.54 -8.52 18.03 5.56 0.10 -8.42 16 25 N -0.72 -7.04 5.37 -46.54 -0.25 -7.29 16 26 H 0.07 1.24 5.89 -51.93 -0.31 0.93 16 27 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 35 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 36 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.09 1.00 5.80 -51.93 -0.30 0.70 16 39 H 0.08 0.89 5.86 -51.93 -0.30 0.59 16 40 H 0.08 1.01 8.05 -51.93 -0.42 0.60 16 41 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.50 6.52 -51.93 -0.34 0.16 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.64 7.88 -51.93 -0.41 0.24 16 46 H 0.09 0.49 7.89 -51.93 -0.41 0.08 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.41 3.88 7.51 -40.82 -0.31 3.57 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -34.35 383.87 -7.97 -42.32 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.39 Total: 1.62 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.61 Total: -0.10 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.09 Total: -44.88 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.19 Total: -21.24 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.35 -7.97 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793244765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.927 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds