Wall clock time and date at job start Fri Apr 10 2020 22:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47148 * 2 1 4 4 C 1.53004 * 109.46813 * 119.99765 * 2 1 3 5 5 N 1.46503 * 109.47040 * 65.00180 * 4 2 1 6 6 C 1.46505 * 119.99741 * 269.99659 * 5 4 2 7 7 C 1.50695 * 109.47091 * 270.00069 * 6 5 4 8 8 H 1.07999 * 120.00199 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99833 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99862 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46969 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47144 * 120.00020 * 11 9 7 14 14 H 1.48505 * 109.47028 * 240.00351 * 11 9 7 15 15 C 1.34769 * 120.00411 * 89.99771 * 5 4 2 16 16 O 1.21281 * 120.00304 * 180.02562 * 15 5 4 17 17 C 1.50709 * 119.99797 * 359.97438 * 15 5 4 18 18 C 1.53001 * 109.46898 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47015 * 180.02562 * 18 17 15 20 20 C 1.52998 * 110.21688 * 63.06954 * 19 18 17 21 21 C 1.54479 * 110.24874 * 185.00300 * 19 18 17 22 22 C 1.54623 * 101.76734 * 144.41829 * 21 19 18 23 23 C 1.51282 * 104.31101 * 335.13584 * 22 21 19 24 24 O 1.21281 * 124.94192 * 196.29810 * 23 22 21 25 25 N 1.34735 * 109.93792 * 16.31290 * 23 22 21 26 26 H 1.09000 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47308 * 300.00509 * 1 2 3 28 28 H 1.09004 * 109.47238 * 59.99728 * 1 2 3 29 29 H 1.08998 * 109.46783 * 239.99464 * 2 1 3 30 30 H 1.08998 * 109.46993 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47009 * 299.99794 * 3 2 1 32 32 H 1.08998 * 109.47716 * 60.00036 * 3 2 1 33 33 H 1.09000 * 109.47007 * 305.00019 * 4 2 1 34 34 H 1.09001 * 109.46729 * 184.99642 * 4 2 1 35 35 H 1.09000 * 109.46921 * 30.00296 * 6 5 4 36 36 H 1.09003 * 109.47070 * 150.00012 * 6 5 4 37 37 H 0.97004 * 120.00293 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46451 * 60.00183 * 17 15 5 39 39 H 1.08999 * 109.47079 * 300.00299 * 17 15 5 40 40 H 1.08999 * 109.46799 * 60.00353 * 18 17 15 41 41 H 1.08999 * 109.47507 * 300.00045 * 18 17 15 42 42 H 1.09001 * 109.47313 * 181.22979 * 20 19 18 43 43 H 1.09000 * 109.47427 * 301.23216 * 20 19 18 44 44 H 1.09006 * 109.47062 * 61.22815 * 20 19 18 45 45 H 1.08994 * 110.96846 * 26.29266 * 21 19 18 46 46 H 1.09004 * 110.96814 * 262.53912 * 21 19 18 47 47 H 1.09002 * 110.48860 * 93.88058 * 22 21 19 48 48 H 1.08998 * 110.48497 * 216.38951 * 22 21 19 49 49 H 0.97003 * 124.30433 * 180.38606 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.3744 -2.5659 1.7614 7 6 0.5715 -2.9407 3.2076 8 1 1.5507 -2.8645 3.6567 9 6 -0.4985 -3.3810 3.9576 10 7 -1.6908 -3.4743 3.4107 11 14 -0.2544 -3.8450 5.7505 12 1 1.1706 -3.6530 6.1219 13 1 -1.1097 -2.9834 6.6056 14 1 -0.6297 -5.2680 5.9491 15 6 2.4713 -3.0331 0.6117 16 8 2.1503 -4.2016 0.5628 17 6 3.7857 -2.5875 0.0241 18 6 4.5166 -3.7957 -0.5649 19 6 5.8512 -3.3435 -1.1609 20 6 6.7556 -2.7780 -0.0640 21 6 6.5475 -4.5255 -1.8712 22 6 7.2222 -3.8197 -3.0701 23 6 6.3883 -2.5768 -3.2900 24 8 6.4049 -1.8979 -4.2948 25 7 5.6262 -2.3369 -2.2050 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6768 1.9564 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 -0.3485 -1.7531 1.6919 36 1 0.0041 -3.4297 1.2093 37 1 -2.4435 -3.7845 3.9382 38 1 4.3988 -2.1377 0.8051 39 1 3.6026 -1.8545 -0.7615 40 1 3.9036 -4.2459 -1.3457 41 1 4.6998 -4.5283 0.2211 42 1 7.6934 -2.4398 -0.5046 43 1 6.2578 -1.9378 0.4201 44 1 6.9598 -3.5536 0.6743 45 1 5.8181 -5.2606 -2.2112 46 1 7.2910 -4.9876 -1.2217 47 1 8.2500 -3.5513 -2.8258 48 1 7.1953 -4.4583 -3.9531 49 1 5.0076 -1.5940 -2.1248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793244765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:05 Heat of formation + Delta-G solvation = -120.222636 kcal Electronic energy + Delta-G solvation = -27095.729520 eV Core-core repulsion = 23441.773827 eV Total energy + Delta-G solvation = -3653.955692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67722 -40.71182 -38.33929 -37.74887 -35.40600 -34.15398 -33.93062 -32.25325 -30.69727 -29.36175 -27.98653 -27.06385 -26.72006 -25.12412 -23.56461 -21.76501 -21.45244 -20.92300 -19.67686 -18.67024 -18.22499 -17.43074 -17.23537 -17.02326 -16.50852 -16.21914 -15.85708 -15.56263 -15.23838 -15.04564 -14.69002 -14.39854 -14.39137 -14.16278 -13.70662 -13.54663 -13.47641 -13.42119 -13.21082 -13.09682 -12.99346 -12.92792 -12.69033 -12.61750 -12.43002 -12.15345 -12.10100 -11.99436 -11.80107 -11.75259 -11.58848 -11.50147 -11.42616 -10.90770 -10.62115 -10.53327 -10.10259 -9.34856 -8.20595 -6.35210 1.36200 1.38387 1.49989 1.60260 1.88718 2.31597 2.42228 2.48661 3.08738 3.37331 3.49559 3.69519 3.88190 3.92931 4.00682 4.05671 4.14137 4.26240 4.27626 4.35021 4.51542 4.60665 4.67458 4.70090 4.79472 4.82374 4.91906 4.94966 5.00040 5.01141 5.05297 5.06831 5.13480 5.16559 5.18197 5.24438 5.27079 5.30610 5.44032 5.45913 5.49137 5.61587 5.90244 5.91907 6.08370 6.10388 6.73229 6.86006 7.27669 7.30790 7.54354 8.86054 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.003717 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.876778 B = 7531.806640 C = 8686.055961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.111 3.889 5 N -0.599 5.599 6 C 0.260 3.740 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.264 1.264 13 H -0.271 1.271 14 H -0.283 1.283 15 C 0.492 3.508 16 O -0.599 6.599 17 C -0.128 4.128 18 C -0.099 4.099 19 C 0.162 3.838 20 C -0.158 4.158 21 C -0.120 4.120 22 C -0.148 4.148 23 C 0.511 3.489 24 O -0.592 6.592 25 N -0.716 5.716 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.032 0.968 36 H -0.012 1.012 37 H 0.265 0.735 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.106 0.894 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.046 5.745 -7.343 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.194 4.194 4 C -0.012 4.012 5 N -0.329 5.329 6 C 0.139 3.861 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.790 3.210 12 H -0.188 1.188 13 H -0.197 1.197 14 H -0.209 1.209 15 C 0.281 3.719 16 O -0.481 6.481 17 C -0.167 4.167 18 C -0.137 4.137 19 C 0.076 3.924 20 C -0.216 4.216 21 C -0.158 4.158 22 C -0.188 4.188 23 C 0.299 3.701 24 O -0.473 6.473 25 N -0.370 5.370 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.050 0.950 36 H 0.007 0.993 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.137 0.863 47 H 0.143 0.857 48 H 0.125 0.875 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 18.771 5.367 -7.829 21.034 hybrid contribution -1.359 -0.165 0.951 1.667 sum 17.412 5.202 -6.878 19.430 Atomic orbital electron populations 1.21899 0.96501 1.00546 1.01577 1.21536 0.95466 0.97821 0.97796 1.21731 1.01907 0.93373 1.02398 1.21841 1.01180 0.79595 0.98538 1.48211 1.20165 1.08631 1.55893 1.18801 0.81388 0.94062 0.91877 1.21787 0.94932 1.44432 0.96729 0.92788 1.25849 0.94729 0.95263 1.03386 1.70063 1.00707 1.47825 1.38357 0.85396 0.78600 0.77809 0.79174 1.18847 1.19671 1.20913 1.21452 0.87147 0.85266 0.77992 1.90637 1.76728 1.20030 1.60709 1.21779 0.92301 1.00459 1.02178 1.21602 0.94484 0.96987 1.00674 1.21149 0.94672 0.88387 0.88223 1.22248 0.99221 1.02478 0.97633 1.22776 1.00636 0.95961 0.96378 1.22382 1.00835 0.94331 1.01250 1.21584 0.80173 0.86800 0.81530 1.90722 1.69392 1.55788 1.31418 1.46629 1.43302 1.30345 1.16730 0.95294 0.93233 0.91726 0.91163 0.90616 0.91806 0.92456 0.91349 0.87937 0.95043 0.99341 0.92565 0.86390 0.87889 0.92575 0.90140 0.91039 0.91453 0.89729 0.90054 0.86285 0.85718 0.87531 0.75278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 8.18 71.98 0.59 -3.90 16 2 C -0.11 -2.64 3.12 -10.79 -0.03 -2.67 16 3 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 4 C 0.11 3.23 4.70 86.38 0.41 3.64 16 5 N -0.60 -24.26 2.28 -826.13 -1.88 -26.14 16 6 C 0.26 13.83 4.23 85.63 0.36 14.19 16 7 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.37 5.46 84.66 0.46 0.83 16 10 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 11 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 C 0.49 19.19 7.67 87.66 0.67 19.86 16 16 O -0.60 -29.90 15.56 -3.03 -0.05 -29.94 16 17 C -0.13 -3.01 3.80 29.85 0.11 -2.90 16 18 C -0.10 -2.14 3.71 30.59 0.11 -2.02 16 19 C 0.16 2.34 0.87 4.05 0.00 2.34 16 20 C -0.16 -1.69 8.53 71.98 0.61 -1.07 16 21 C -0.12 -1.36 6.21 31.65 0.20 -1.16 16 22 C -0.15 -1.89 6.85 30.59 0.21 -1.68 16 23 C 0.51 10.87 8.46 87.85 0.74 11.61 16 24 O -0.59 -18.31 18.03 -3.03 -0.05 -18.37 16 25 N -0.72 -12.41 5.37 -419.56 -2.25 -14.66 16 26 H 0.03 1.09 5.89 -2.39 -0.01 1.07 16 27 H 0.05 1.53 8.14 -2.38 -0.02 1.52 16 28 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.07 1.68 7.30 -2.39 -0.02 1.66 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 34 H 0.10 2.19 6.44 -2.39 -0.02 2.18 16 35 H 0.03 1.70 5.98 -2.39 -0.01 1.69 16 36 H -0.01 -0.72 7.42 -2.39 -0.02 -0.74 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.12 2.18 5.80 -2.39 -0.01 2.17 16 39 H 0.10 2.00 5.86 -2.39 -0.01 1.99 16 40 H 0.06 1.47 8.05 -2.39 -0.02 1.45 16 41 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.72 6.52 -2.39 -0.02 0.70 16 44 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.08 1.05 7.88 -2.39 -0.02 1.03 16 46 H 0.12 0.77 7.89 -2.38 -0.02 0.75 16 47 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 49 H 0.41 6.80 7.51 -92.71 -0.70 6.11 16 Total: -1.00 -80.65 383.87 3.66 -76.99 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.24 Total: 16.75 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.35 Total: 4.79 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -3.85 Total: -96.80 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.10 Total: -48.31 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.65 3.66 -76.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793244765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.232 kcal (2) G-P(sol) polarization free energy of solvation -80.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds