Wall clock time and date at job start Fri Apr 10 2020 22:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47214 * 2 1 4 4 C 1.53004 * 109.46493 * 119.99412 * 2 1 3 5 5 N 1.46498 * 109.47146 * 65.00284 * 4 2 1 6 6 C 1.34777 * 119.99785 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99835 * 180.02562 * 6 5 4 9 9 C 1.53070 * 109.44585 * 59.79079 * 8 6 5 10 10 C 1.53195 * 109.29524 * 181.23845 * 9 8 6 11 11 N 1.46919 * 108.89273 * 305.57804 * 10 9 8 12 12 C 1.34783 * 120.63144 * 233.55709 * 11 10 9 13 13 O 1.21274 * 119.99655 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99922 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47009 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47500 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99447 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00503 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00492 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99599 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47084 * 90.00135 * 20 18 16 22 22 H 1.48502 * 109.46825 * 209.99931 * 20 18 16 23 23 H 1.48492 * 109.47028 * 329.99880 * 20 18 16 24 24 C 1.46928 * 118.73982 * 53.53793 * 11 10 9 25 25 C 1.53039 * 109.46083 * 179.97438 * 8 6 5 26 26 H 1.08995 * 109.47688 * 300.00828 * 1 2 3 27 27 H 1.09005 * 109.46704 * 60.00958 * 1 2 3 28 28 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47688 * 239.99172 * 2 1 3 30 30 H 1.08999 * 109.47021 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46502 * 299.99165 * 3 2 1 32 32 H 1.08995 * 109.47468 * 59.99038 * 3 2 1 33 33 H 1.08998 * 109.47532 * 304.99834 * 4 2 1 34 34 H 1.08999 * 109.47050 * 185.00270 * 4 2 1 35 35 H 0.96993 * 120.00104 * 0.02562 * 5 4 2 36 36 H 1.09007 * 109.45494 * 299.96338 * 8 6 5 37 37 H 1.08997 * 109.38860 * 61.36032 * 9 8 6 38 38 H 1.09003 * 109.62046 * 301.25375 * 9 8 6 39 39 H 1.09002 * 109.58720 * 185.71834 * 10 9 8 40 40 H 1.08996 * 109.58651 * 65.43731 * 10 9 8 41 41 H 1.09001 * 109.47385 * 300.00399 * 14 12 11 42 42 H 1.08997 * 109.47457 * 60.00250 * 14 12 11 43 43 H 1.09001 * 109.46917 * 300.00128 * 15 14 12 44 44 H 1.08997 * 109.47262 * 59.99573 * 15 14 12 45 45 H 0.96996 * 120.00063 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.58787 * 66.18123 * 24 11 10 47 47 H 1.09007 * 109.58600 * 186.46436 * 24 11 10 48 48 H 1.09002 * 109.49876 * 58.67167 * 25 8 6 49 49 H 1.09005 * 109.52615 * 298.59417 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1327 1.1908 6 6 1.9953 -2.9678 2.1916 7 8 2.6252 -2.5508 3.1404 8 6 1.5971 -4.4200 2.1310 9 6 2.2047 -5.0633 0.8820 10 6 1.7725 -6.5312 0.8075 11 7 2.1303 -7.1970 2.0673 12 6 2.8666 -8.3259 2.0624 13 8 3.2407 -8.8012 1.0113 14 6 3.2259 -8.9968 3.3631 15 6 4.0594 -10.2478 3.0784 16 6 4.4182 -10.9192 4.3791 17 1 4.0854 -10.4956 5.3152 18 6 5.1713 -12.0740 4.3741 19 7 5.4849 -12.6596 5.5091 20 14 5.7463 -12.8070 2.7549 21 1 7.0701 -12.2377 2.3961 22 1 5.8623 -14.2811 2.8923 23 1 4.7637 -12.4850 1.6891 24 6 1.6705 -6.6086 3.3327 25 6 2.1071 -5.1410 3.3809 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6052 -0.2616 2.1371 34 1 3.1262 -0.6443 1.2954 35 1 1.1488 -2.4663 0.4318 36 1 0.5108 -4.4969 2.0849 37 1 3.2917 -5.0065 0.9381 38 1 1.8577 -4.5363 -0.0068 39 1 2.2826 -7.0206 -0.0222 40 1 0.6943 -6.5874 0.6578 41 1 3.8036 -8.3082 3.9797 42 1 2.3146 -9.2792 3.8902 43 1 3.4819 -10.9365 2.4617 44 1 4.9707 -9.9651 2.5515 45 1 6.0144 -13.4723 5.5055 46 1 0.5837 -6.6691 3.3903 47 1 2.1115 -7.1508 4.1693 48 1 1.6908 -4.6670 4.2697 49 1 3.1952 -5.0857 3.4149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812458605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:08 Heat of formation + Delta-G solvation = -104.091440 kcal Electronic energy + Delta-G solvation = -25833.004130 eV Core-core repulsion = 22179.747938 eV Total energy + Delta-G solvation = -3653.256191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63898 -39.52239 -37.42733 -36.71609 -33.84326 -33.52902 -32.82472 -31.60487 -30.80050 -27.74519 -27.55817 -26.24073 -25.09184 -23.31907 -21.99442 -21.05305 -20.79796 -20.03191 -18.64104 -17.62998 -17.08248 -16.56227 -16.13512 -15.95490 -15.48713 -15.32933 -14.97891 -14.56880 -14.21919 -14.09354 -14.05193 -13.76631 -13.43934 -13.31981 -13.10904 -12.81018 -12.56018 -12.52142 -12.46049 -12.27618 -11.98849 -11.68537 -11.48756 -11.44249 -11.38714 -11.27868 -10.97451 -10.94619 -10.84056 -10.10810 -10.00611 -9.98028 -9.76573 -9.41802 -9.21820 -9.12328 -8.54266 -8.47722 -6.00880 -3.99468 2.37804 2.82051 3.08180 3.20317 3.39483 3.45871 3.56804 4.18540 4.30579 4.33027 4.44659 4.48534 4.49733 4.52786 4.87158 4.95363 4.98202 5.07886 5.09176 5.12982 5.14376 5.26827 5.31879 5.34105 5.34584 5.40429 5.41037 5.49470 5.56434 5.63786 5.70559 5.72413 5.75160 5.82863 5.91011 6.05951 6.07776 6.10752 6.16168 6.62317 6.73542 7.14004 7.38445 7.45440 7.61901 7.81421 7.93795 8.50918 8.62600 9.02186 9.62225 11.11919 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.002269 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.679085 B =12334.887731 C =12584.361782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.122 3.878 5 N -0.733 5.733 6 C 0.518 3.482 7 O -0.536 6.536 8 C -0.105 4.105 9 C -0.124 4.124 10 C 0.112 3.888 11 N -0.624 5.624 12 C 0.514 3.486 13 O -0.541 6.541 14 C -0.122 4.122 15 C 0.001 3.999 16 C -0.524 4.524 17 H 0.073 0.927 18 C 0.069 3.931 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.108 3.892 25 C -0.115 4.115 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 27.493 -11.841 32.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.204 4.204 4 C -0.002 4.002 5 N -0.385 5.385 6 C 0.304 3.696 7 O -0.411 6.411 8 C -0.127 4.127 9 C -0.162 4.162 10 C -0.011 4.011 11 N -0.360 5.360 12 C 0.305 3.695 13 O -0.417 6.417 14 C -0.161 4.161 15 C -0.037 4.037 16 C -0.562 4.562 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.016 4.016 25 C -0.154 4.154 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.101 0.899 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.846 27.374 -11.633 32.399 hybrid contribution 0.049 -0.413 -1.091 1.168 sum -12.798 26.961 -12.724 32.444 Atomic orbital electron populations 1.21876 0.94620 1.01932 1.02239 1.21366 0.96509 0.97055 0.97862 1.21766 1.01372 0.94900 1.02316 1.21433 1.00171 0.80484 0.98071 1.46059 1.58620 1.09808 1.24062 1.20738 0.78858 0.88108 0.81887 1.90719 1.39237 1.78019 1.33175 1.21358 1.02168 0.90956 0.98208 1.21929 1.02078 0.96251 0.95983 1.21444 0.99962 0.91280 0.88378 1.48279 1.54720 1.26423 1.06599 1.21563 0.75904 0.79131 0.92911 1.90633 1.53162 1.63782 1.34104 1.21696 1.02113 0.99561 0.92779 1.19379 0.94971 0.91747 0.97562 1.21112 1.33496 1.09095 0.92499 0.90911 1.24971 0.95458 0.96618 0.96212 1.69908 1.38853 1.19804 1.25659 0.86800 0.79862 0.77968 0.84950 1.20259 1.21463 1.18550 1.21772 0.99556 0.93314 0.86919 1.21761 1.02835 0.94332 0.96458 0.92342 0.92311 0.92618 0.90485 0.92258 0.92093 0.92275 0.91458 0.91485 0.76586 0.88342 0.90767 0.90693 0.88708 0.91767 0.89561 0.89578 0.95854 0.96320 0.92741 0.91436 0.88352 0.89870 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.07 37.16 0.34 -0.25 16 2 C -0.11 -0.48 2.96 -90.62 -0.27 -0.75 16 3 C -0.15 -0.60 9.19 37.16 0.34 -0.26 16 4 C 0.12 0.83 5.06 -4.04 -0.02 0.81 16 5 N -0.73 -5.08 5.17 -60.29 -0.31 -5.39 16 6 C 0.52 5.17 7.16 -10.99 -0.08 5.09 16 7 O -0.54 -7.62 15.98 5.56 0.09 -7.54 16 8 C -0.11 -0.90 2.48 -91.72 -0.23 -1.12 16 9 C -0.12 -1.07 5.27 -26.59 -0.14 -1.21 16 10 C 0.11 1.23 6.43 -3.71 -0.02 1.21 16 11 N -0.62 -8.54 2.97 -172.77 -0.51 -9.05 16 12 C 0.51 9.51 7.70 -10.98 -0.08 9.43 16 13 O -0.54 -11.99 15.39 5.56 0.09 -11.91 16 14 C -0.12 -2.40 3.98 -27.88 -0.11 -2.51 16 15 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 16 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 17 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 20 Si 0.88 22.80 27.47 -169.99 -4.67 18.13 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 24 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 25 C -0.12 -1.19 4.65 -26.61 -0.12 -1.31 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.20 7.18 -51.93 -0.37 -0.17 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 1.77 7.05 -40.82 -0.29 1.48 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.44 7.53 -51.93 -0.39 0.04 16 39 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.59 7.69 -51.93 -0.40 1.19 16 42 H 0.09 1.56 7.94 -51.93 -0.41 1.15 16 43 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 44 H 0.02 0.49 7.53 -51.93 -0.39 0.09 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.11 5.93 -51.92 -0.31 0.80 16 48 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 49 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -36.36 385.67 -8.48 -44.84 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -8.80 Total: -4.18 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.95 Total: -3.30 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.05 Total: -41.85 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.67 Total: 18.13 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.36 -8.48 -44.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812458605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.254 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds