Wall clock time and date at job start Fri Apr 10 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47214 * 2 1 4 4 C 1.53004 * 109.46493 * 119.99412 * 2 1 3 5 5 N 1.46498 * 109.47146 * 65.00284 * 4 2 1 6 6 C 1.34777 * 119.99785 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99835 * 180.02562 * 6 5 4 9 9 C 1.53070 * 109.44585 * 59.79079 * 8 6 5 10 10 C 1.53195 * 109.29524 * 181.23845 * 9 8 6 11 11 N 1.46919 * 108.89273 * 305.57804 * 10 9 8 12 12 C 1.34783 * 120.63144 * 233.55709 * 11 10 9 13 13 O 1.21274 * 119.99655 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99922 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47009 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47500 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99447 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00503 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00492 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99599 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47084 * 90.00135 * 20 18 16 22 22 H 1.48502 * 109.46825 * 209.99931 * 20 18 16 23 23 H 1.48492 * 109.47028 * 329.99880 * 20 18 16 24 24 C 1.46928 * 118.73982 * 53.53793 * 11 10 9 25 25 C 1.53039 * 109.46083 * 179.97438 * 8 6 5 26 26 H 1.08995 * 109.47688 * 300.00828 * 1 2 3 27 27 H 1.09005 * 109.46704 * 60.00958 * 1 2 3 28 28 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47688 * 239.99172 * 2 1 3 30 30 H 1.08999 * 109.47021 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46502 * 299.99165 * 3 2 1 32 32 H 1.08995 * 109.47468 * 59.99038 * 3 2 1 33 33 H 1.08998 * 109.47532 * 304.99834 * 4 2 1 34 34 H 1.08999 * 109.47050 * 185.00270 * 4 2 1 35 35 H 0.96993 * 120.00104 * 0.02562 * 5 4 2 36 36 H 1.09007 * 109.45494 * 299.96338 * 8 6 5 37 37 H 1.08997 * 109.38860 * 61.36032 * 9 8 6 38 38 H 1.09003 * 109.62046 * 301.25375 * 9 8 6 39 39 H 1.09002 * 109.58720 * 185.71834 * 10 9 8 40 40 H 1.08996 * 109.58651 * 65.43731 * 10 9 8 41 41 H 1.09001 * 109.47385 * 300.00399 * 14 12 11 42 42 H 1.08997 * 109.47457 * 60.00250 * 14 12 11 43 43 H 1.09001 * 109.46917 * 300.00128 * 15 14 12 44 44 H 1.08997 * 109.47262 * 59.99573 * 15 14 12 45 45 H 0.96996 * 120.00063 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.58787 * 66.18123 * 24 11 10 47 47 H 1.09007 * 109.58600 * 186.46436 * 24 11 10 48 48 H 1.09002 * 109.49876 * 58.67167 * 25 8 6 49 49 H 1.09005 * 109.52615 * 298.59417 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1327 1.1908 6 6 1.9953 -2.9678 2.1916 7 8 2.6252 -2.5508 3.1404 8 6 1.5971 -4.4200 2.1310 9 6 2.2047 -5.0633 0.8820 10 6 1.7725 -6.5312 0.8075 11 7 2.1303 -7.1970 2.0673 12 6 2.8666 -8.3259 2.0624 13 8 3.2407 -8.8012 1.0113 14 6 3.2259 -8.9968 3.3631 15 6 4.0594 -10.2478 3.0784 16 6 4.4182 -10.9192 4.3791 17 1 4.0854 -10.4956 5.3152 18 6 5.1713 -12.0740 4.3741 19 7 5.4849 -12.6596 5.5091 20 14 5.7463 -12.8070 2.7549 21 1 7.0701 -12.2377 2.3961 22 1 5.8623 -14.2811 2.8923 23 1 4.7637 -12.4850 1.6891 24 6 1.6705 -6.6086 3.3327 25 6 2.1071 -5.1410 3.3809 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6052 -0.2616 2.1371 34 1 3.1262 -0.6443 1.2954 35 1 1.1488 -2.4663 0.4318 36 1 0.5108 -4.4969 2.0849 37 1 3.2917 -5.0065 0.9381 38 1 1.8577 -4.5363 -0.0068 39 1 2.2826 -7.0206 -0.0222 40 1 0.6943 -6.5874 0.6578 41 1 3.8036 -8.3082 3.9797 42 1 2.3146 -9.2792 3.8902 43 1 3.4819 -10.9365 2.4617 44 1 4.9707 -9.9651 2.5515 45 1 6.0144 -13.4723 5.5055 46 1 0.5837 -6.6691 3.3903 47 1 2.1115 -7.1508 4.1693 48 1 1.6908 -4.6670 4.2697 49 1 3.1952 -5.0857 3.4149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812458605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:07 Heat of formation + Delta-G solvation = -128.765159 kcal Electronic energy + Delta-G solvation = -25834.074062 eV Core-core repulsion = 22179.747938 eV Total energy + Delta-G solvation = -3654.326124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55559 -40.64732 -38.30690 -37.50967 -35.59423 -34.60002 -33.81187 -33.24194 -31.98714 -28.70079 -28.04543 -27.60002 -26.03028 -24.33272 -23.29317 -22.21877 -21.49338 -20.84836 -19.89354 -19.14590 -18.29913 -17.61143 -17.16562 -16.79080 -16.67743 -16.47360 -16.24946 -15.59171 -15.27303 -15.13988 -14.99571 -14.76027 -14.51350 -14.44402 -14.17991 -13.91835 -13.70453 -13.37730 -13.30414 -13.24754 -12.96326 -12.91217 -12.88208 -12.31933 -12.04847 -12.01430 -11.97448 -11.87029 -11.78666 -11.76175 -11.65812 -11.62387 -11.38651 -10.83552 -10.78525 -10.66666 -10.09934 -9.63876 -8.31661 -6.34620 1.32819 1.34258 1.49652 1.60273 1.66195 2.04554 2.22096 2.34680 3.03732 3.56317 3.61409 3.74311 3.80930 3.90174 3.95438 4.06494 4.12319 4.24412 4.33264 4.35541 4.44298 4.46534 4.58627 4.66363 4.66882 4.73713 4.77920 4.81201 4.85932 4.88171 4.91209 5.00430 5.03957 5.06277 5.11857 5.23004 5.29544 5.32251 5.35788 5.41031 5.43184 5.51578 5.60201 5.64851 6.23010 6.37689 6.54309 6.71441 7.23033 7.25304 7.30627 8.83945 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.002269 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.679085 B =12334.887731 C =12584.361782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.147 4.147 4 C 0.122 3.878 5 N -0.716 5.716 6 C 0.516 3.484 7 O -0.586 6.586 8 C -0.098 4.098 9 C -0.114 4.114 10 C 0.108 3.892 11 N -0.614 5.614 12 C 0.514 3.486 13 O -0.586 6.586 14 C -0.116 4.116 15 C 0.006 3.994 16 C -0.529 4.529 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.939 3.061 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.261 1.261 24 C 0.104 3.896 25 C -0.112 4.112 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.415 0.585 36 H 0.135 0.865 37 H 0.047 0.953 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.011 0.989 44 H 0.005 0.995 45 H 0.267 0.733 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.802 28.879 -13.855 35.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.205 4.205 4 C -0.002 4.002 5 N -0.368 5.368 6 C 0.303 3.697 7 O -0.466 6.466 8 C -0.119 4.119 9 C -0.152 4.152 10 C -0.014 4.014 11 N -0.347 5.347 12 C 0.304 3.696 13 O -0.466 6.466 14 C -0.156 4.156 15 C -0.032 4.032 16 C -0.567 4.567 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.583 5.583 20 Si 0.763 3.237 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.018 4.018 25 C -0.150 4.150 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.253 0.747 36 H 0.153 0.847 37 H 0.066 0.934 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.085 28.814 -13.670 35.279 hybrid contribution 0.682 -0.725 -0.396 1.072 sum -14.402 28.088 -14.066 34.558 Atomic orbital electron populations 1.21875 0.93833 1.02484 1.02372 1.21314 0.97027 0.96849 0.96725 1.21784 1.01146 0.94869 1.02690 1.21446 0.99216 0.80538 0.99012 1.45946 1.57614 1.09595 1.23690 1.21005 0.78160 0.88883 0.81654 1.90708 1.41622 1.78924 1.35303 1.21342 1.04121 0.89492 0.96928 1.21866 1.00530 0.95132 0.97679 1.21707 1.01796 0.91795 0.86094 1.48267 1.52708 1.24794 1.08940 1.21165 0.76551 0.80460 0.91419 1.90613 1.55409 1.65574 1.35041 1.21510 1.02137 0.97685 0.94265 1.19220 0.95133 0.93708 0.95135 1.21424 1.32917 1.09151 0.93215 0.93194 1.25812 0.95846 0.97321 0.99502 1.70020 1.39982 1.20592 1.27724 0.85825 0.79451 0.77713 0.80704 1.19534 1.20191 1.18487 1.22003 1.01455 0.93068 0.85224 1.21679 1.01065 0.94297 0.98004 0.92975 0.91455 0.91853 0.89582 0.92703 0.91078 0.92554 0.92576 0.93136 0.74690 0.84692 0.93436 0.86931 0.90820 0.88233 0.88693 0.87906 0.97015 0.97612 0.92372 0.87936 0.89149 0.89265 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.07 71.98 0.65 -0.11 16 2 C -0.10 -0.68 2.96 -10.79 -0.03 -0.72 16 3 C -0.15 -1.01 9.19 71.98 0.66 -0.35 16 4 C 0.12 1.51 5.06 86.38 0.44 1.95 16 5 N -0.72 -8.21 5.17 -463.06 -2.39 -10.60 16 6 C 0.52 9.38 7.16 87.66 0.63 10.01 16 7 O -0.59 -16.58 15.98 -3.03 -0.05 -16.63 16 8 C -0.10 -1.36 2.48 -11.50 -0.03 -1.39 16 9 C -0.11 -1.62 5.27 30.68 0.16 -1.46 16 10 C 0.11 2.05 6.43 86.36 0.56 2.60 16 11 N -0.61 -15.59 2.97 -818.91 -2.44 -18.03 16 12 C 0.51 18.70 7.70 87.66 0.67 19.38 16 13 O -0.59 -26.05 15.39 -3.01 -0.05 -26.10 16 14 C -0.12 -4.56 3.98 29.85 0.12 -4.44 16 15 C 0.01 0.31 3.33 29.85 0.10 0.41 16 16 C -0.53 -31.09 9.66 25.60 0.25 -30.84 16 17 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 18 C 0.01 0.78 5.47 84.65 0.46 1.24 16 19 N -0.94 -59.70 13.96 21.44 0.30 -59.40 16 20 Si 0.94 47.44 27.47 68.60 1.88 49.33 16 21 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.26 -13.06 6.54 99.48 0.65 -12.41 16 24 C 0.10 1.99 6.34 86.36 0.55 2.54 16 25 C -0.11 -2.12 4.65 30.67 0.14 -1.98 16 26 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 28 H 0.06 0.23 7.18 -2.39 -0.02 0.21 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 2.07 7.05 -92.71 -0.65 1.41 16 36 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 0.80 7.53 -2.39 -0.02 0.78 16 39 H 0.07 1.79 7.00 -2.39 -0.02 1.77 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 3.51 7.69 -2.39 -0.02 3.50 16 42 H 0.10 3.64 7.94 -2.39 -0.02 3.62 16 43 H 0.01 0.61 7.15 -2.39 -0.02 0.59 16 44 H 0.01 0.29 7.53 -2.39 -0.02 0.27 16 45 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.09 1.90 5.93 -2.38 -0.01 1.88 16 48 H 0.09 1.62 8.07 -2.39 -0.02 1.60 16 49 H 0.05 1.19 8.13 -2.38 -0.02 1.17 16 Total: -1.00 -81.82 385.67 2.80 -79.02 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.21 Total: 5.57 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.33 Total: -3.16 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -4.53 Total: -88.03 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.09 Total: -42.73 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.88 Total: 49.33 kcal Total: -81.82 2.80 -79.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812458605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.742 kcal (2) G-P(sol) polarization free energy of solvation -81.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds