Wall clock time and date at job start Fri Apr 10 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47330 * 89.99925 * 8 6 4 10 10 H 1.48495 * 109.47202 * 209.99886 * 8 6 4 11 11 H 1.48496 * 109.47402 * 329.99928 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 2 15 15 O 1.21353 * 120.00267 * 0.28147 * 14 13 12 16 16 C 1.49445 * 120.00114 * 180.27895 * 14 13 12 17 17 O 1.21353 * 120.00086 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00110 * 180.02562 * 16 14 13 19 19 C 1.46964 * 120.36581 * 359.71629 * 18 16 14 20 20 C 1.52837 * 108.83411 * 68.62572 * 19 18 16 21 21 C 1.53798 * 109.25382 * 72.60004 * 20 19 18 22 22 C 1.52443 * 109.40401 * 282.12562 * 21 20 19 23 23 C 1.53952 * 110.73404 * 113.72832 * 22 21 20 24 24 C 1.52886 * 109.73111 * 315.63616 * 23 22 21 25 25 C 1.45344 * 120.36553 * 179.97438 * 18 16 14 26 26 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 31 31 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 32 32 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 34 34 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 36 36 H 1.09002 * 109.53003 * 188.27409 * 19 18 16 37 37 H 1.08996 * 109.53045 * 308.49960 * 19 18 16 38 38 H 1.08997 * 109.50465 * 312.64975 * 20 19 18 39 39 H 1.08998 * 109.43944 * 192.51470 * 20 19 18 40 40 H 1.09004 * 109.48445 * 162.14386 * 21 20 19 41 41 H 1.08998 * 109.49587 * 42.11085 * 21 20 19 42 42 H 1.08999 * 109.22528 * 353.40771 * 22 21 20 43 43 H 1.09003 * 109.18973 * 234.02719 * 22 21 20 44 44 H 1.09000 * 109.43329 * 195.55525 * 23 22 21 45 45 H 1.09007 * 109.43004 * 75.71332 * 23 22 21 46 46 H 1.08993 * 109.48895 * 167.12783 * 24 23 22 47 47 H 1.09004 * 109.48276 * 47.07096 * 24 23 22 48 48 H 1.09000 * 109.67371 * 343.05367 * 25 18 16 49 49 H 1.09005 * 109.67116 * 103.54762 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8728 -0.4943 3.6694 15 8 2.5706 -1.4810 3.7808 16 6 1.3696 0.2065 4.8897 17 8 0.6724 1.1935 4.7784 18 7 1.6911 -0.2569 6.1137 19 6 2.5308 -1.4544 6.2579 20 6 3.9462 -1.1244 5.7849 21 6 4.6290 -0.2173 6.8224 22 6 4.1157 1.2093 6.6637 23 6 3.3056 1.6379 7.9007 24 6 2.3592 0.5105 8.3139 25 6 1.2065 0.4188 7.3058 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 0.7081 1.1609 -3.4844 33 1 3.1301 -0.7216 1.2490 34 1 1.6768 -1.7489 1.2492 35 1 0.9939 0.7579 2.3564 36 1 2.5587 -1.7561 7.3050 37 1 2.1182 -2.2635 5.6552 38 1 3.8984 -0.6090 4.8257 39 1 4.5165 -2.0468 5.6759 40 1 5.7077 -0.2350 6.6669 41 1 4.4005 -0.5763 7.8259 42 1 3.4792 1.2656 5.7807 43 1 4.9633 1.8832 6.5386 44 1 2.7254 2.5295 7.6631 45 1 3.9874 1.8582 8.7221 46 1 1.9589 0.7172 9.3063 47 1 2.9038 -0.4336 8.3304 48 1 0.8652 1.4210 7.0464 49 1 0.3831 -0.1483 7.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817849356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:10 Heat of formation + Delta-G solvation = -66.110266 kcal Electronic energy + Delta-G solvation = -27723.889708 eV Core-core repulsion = 24072.280504 eV Total energy + Delta-G solvation = -3651.609204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04469 -38.79433 -37.72716 -36.48402 -34.39941 -33.42040 -33.03990 -30.88101 -28.78341 -26.87469 -26.10201 -25.72011 -25.27695 -24.05904 -22.35659 -21.93170 -20.05276 -19.17383 -18.76165 -17.62368 -17.07135 -16.21984 -15.98840 -15.58826 -15.22211 -14.86744 -14.77757 -14.44249 -14.08331 -13.89623 -13.81289 -13.20726 -13.06481 -12.93313 -12.64826 -12.29435 -12.24608 -12.15668 -11.81363 -11.42879 -11.22722 -11.21036 -11.04115 -10.96012 -10.85397 -10.73520 -10.70520 -10.59307 -10.41123 -10.23096 -10.19912 -9.63774 -9.46232 -9.10428 -8.79830 -8.69814 -8.49406 -8.35433 -6.02696 -4.13547 1.70054 2.58341 3.27787 3.35041 3.38255 3.49091 3.77042 4.38218 4.48012 4.67500 4.71187 4.80091 4.87042 4.93491 5.07253 5.23934 5.25936 5.37715 5.44704 5.52640 5.57562 5.63931 5.69371 5.77698 5.99634 6.04371 6.09141 6.12275 6.14240 6.23873 6.24863 6.31483 6.47596 6.55378 6.67825 6.85023 6.85594 6.95308 7.00639 7.10131 7.33434 7.55321 7.65365 7.70366 8.00177 8.01097 8.13845 8.34226 8.43583 8.86703 9.52369 10.98669 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.003221 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.873044 B = 8691.547155 C = 8980.565283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.681 5.681 14 C 0.491 3.509 15 O -0.523 6.523 16 C 0.506 3.494 17 O -0.525 6.525 18 N -0.582 5.582 19 C 0.116 3.884 20 C -0.132 4.132 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.147 4.147 25 C 0.108 3.892 26 H 0.008 0.992 27 H 0.087 0.913 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.008 0.992 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.410 0.590 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -0.884 20.775 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.333 5.333 14 C 0.271 3.729 15 O -0.401 6.401 16 C 0.289 3.711 17 O -0.402 6.402 18 N -0.317 5.317 19 C -0.006 4.006 20 C -0.170 4.170 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.184 4.184 25 C -0.015 4.015 26 H 0.027 0.973 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.247 0.753 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.110 0.890 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.253 -0.930 20.611 20.887 hybrid contribution 0.069 -0.078 -0.859 0.865 sum 3.322 -1.008 19.752 20.055 Atomic orbital electron populations 1.21854 0.97623 0.99236 1.00368 1.18376 0.92943 0.92853 0.90307 1.21844 0.98569 0.98274 1.00359 1.20948 1.31691 1.12153 0.89796 0.92378 1.24884 0.94846 0.94893 0.98872 1.69811 1.36491 1.22653 1.23286 0.86560 0.79290 0.79367 0.82577 1.20713 1.21267 1.19900 1.21908 0.98452 0.95967 0.82900 1.46231 1.50566 1.31313 1.05159 1.19925 0.82464 0.85601 0.84952 1.90715 1.37227 1.25867 1.86319 1.20456 0.81106 0.84616 0.84929 1.90737 1.37205 1.25736 1.86476 1.47698 1.50130 1.28985 1.04841 1.21916 0.90781 0.86628 1.01247 1.22337 0.94665 1.00468 0.99528 1.21896 0.99732 0.95330 0.99575 1.21733 0.99299 0.96497 0.98483 1.21727 0.97942 0.97893 0.97792 1.22303 0.96973 1.00847 0.98287 1.21556 0.96021 0.99201 0.84677 0.97301 0.89464 0.95394 0.95387 0.89488 0.97296 0.92948 0.92081 0.92088 0.75315 0.90548 0.89273 0.89622 0.90983 0.92355 0.91553 0.92037 0.92603 0.91918 0.92180 0.90916 0.89778 0.89004 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 4 C -0.51 -13.13 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 N -0.68 -12.61 4.95 -60.73 -0.30 -12.91 16 14 C 0.49 8.46 7.08 -11.59 -0.08 8.38 16 15 O -0.52 -9.22 11.13 5.49 0.06 -9.15 16 16 C 0.51 7.93 6.30 -11.59 -0.07 7.86 16 17 O -0.53 -9.32 15.91 5.49 0.09 -9.23 16 18 N -0.58 -7.15 1.67 -174.58 -0.29 -7.44 16 19 C 0.12 1.27 4.91 -3.87 -0.02 1.25 16 20 C -0.13 -1.52 4.51 -26.40 -0.12 -1.64 16 21 C -0.13 -1.24 5.49 -26.60 -0.15 -1.38 16 22 C -0.12 -1.30 5.40 -26.52 -0.14 -1.44 16 23 C -0.12 -1.02 5.75 -26.29 -0.15 -1.17 16 24 C -0.15 -1.14 5.45 -26.58 -0.14 -1.28 16 25 C 0.11 1.08 6.01 -4.45 -0.03 1.05 16 26 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 27 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 31 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.41 7.62 5.64 -40.82 -0.23 7.39 16 36 H 0.08 0.63 6.07 -51.93 -0.32 0.31 16 37 H 0.09 1.10 6.69 -51.93 -0.35 0.75 16 38 H 0.09 1.26 4.80 -51.93 -0.25 1.01 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.54 5.48 -51.93 -0.28 0.26 16 42 H 0.06 0.81 5.38 -51.93 -0.28 0.53 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.62 3.35 -51.93 -0.17 0.45 16 48 H 0.09 1.05 6.79 -51.93 -0.35 0.70 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -27.25 354.52 -8.13 -35.37 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.75 Total: 7.30 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.77 Total: -1.75 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.07 Total: -43.43 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.15 Total: -18.39 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.25 -8.13 -35.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817849356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.737 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds