Wall clock time and date at job start Fri Apr 10 2020 22:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47330 * 89.99925 * 8 6 4 10 10 H 1.48495 * 109.47202 * 209.99886 * 8 6 4 11 11 H 1.48496 * 109.47402 * 329.99928 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 2 15 15 O 1.21353 * 120.00267 * 0.28147 * 14 13 12 16 16 C 1.49445 * 120.00114 * 180.27895 * 14 13 12 17 17 O 1.21353 * 120.00086 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00110 * 180.02562 * 16 14 13 19 19 C 1.46964 * 120.36581 * 359.71629 * 18 16 14 20 20 C 1.52837 * 108.83411 * 68.62572 * 19 18 16 21 21 C 1.53798 * 109.25382 * 72.60004 * 20 19 18 22 22 C 1.52443 * 109.40401 * 282.12562 * 21 20 19 23 23 C 1.53952 * 110.73404 * 113.72832 * 22 21 20 24 24 C 1.52886 * 109.73111 * 315.63616 * 23 22 21 25 25 C 1.45344 * 120.36553 * 179.97438 * 18 16 14 26 26 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 31 31 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 32 32 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 34 34 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 36 36 H 1.09002 * 109.53003 * 188.27409 * 19 18 16 37 37 H 1.08996 * 109.53045 * 308.49960 * 19 18 16 38 38 H 1.08997 * 109.50465 * 312.64975 * 20 19 18 39 39 H 1.08998 * 109.43944 * 192.51470 * 20 19 18 40 40 H 1.09004 * 109.48445 * 162.14386 * 21 20 19 41 41 H 1.08998 * 109.49587 * 42.11085 * 21 20 19 42 42 H 1.08999 * 109.22528 * 353.40771 * 22 21 20 43 43 H 1.09003 * 109.18973 * 234.02719 * 22 21 20 44 44 H 1.09000 * 109.43329 * 195.55525 * 23 22 21 45 45 H 1.09007 * 109.43004 * 75.71332 * 23 22 21 46 46 H 1.08993 * 109.48895 * 167.12783 * 24 23 22 47 47 H 1.09004 * 109.48276 * 47.07096 * 24 23 22 48 48 H 1.09000 * 109.67371 * 343.05367 * 25 18 16 49 49 H 1.09005 * 109.67116 * 103.54762 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8728 -0.4943 3.6694 15 8 2.5706 -1.4810 3.7808 16 6 1.3696 0.2065 4.8897 17 8 0.6724 1.1935 4.7784 18 7 1.6911 -0.2569 6.1137 19 6 2.5308 -1.4544 6.2579 20 6 3.9462 -1.1244 5.7849 21 6 4.6290 -0.2173 6.8224 22 6 4.1157 1.2093 6.6637 23 6 3.3056 1.6379 7.9007 24 6 2.3592 0.5105 8.3139 25 6 1.2065 0.4188 7.3058 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 0.7081 1.1609 -3.4844 33 1 3.1301 -0.7216 1.2490 34 1 1.6768 -1.7489 1.2492 35 1 0.9939 0.7579 2.3564 36 1 2.5587 -1.7561 7.3050 37 1 2.1182 -2.2635 5.6552 38 1 3.8984 -0.6090 4.8257 39 1 4.5165 -2.0468 5.6759 40 1 5.7077 -0.2350 6.6669 41 1 4.4005 -0.5763 7.8259 42 1 3.4792 1.2656 5.7807 43 1 4.9633 1.8832 6.5386 44 1 2.7254 2.5295 7.6631 45 1 3.9874 1.8582 8.7221 46 1 1.9589 0.7172 9.3063 47 1 2.9038 -0.4336 8.3304 48 1 0.8652 1.4210 7.0464 49 1 0.3831 -0.1483 7.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817849356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:09 Heat of formation + Delta-G solvation = -80.584376 kcal Electronic energy + Delta-G solvation = -27724.517353 eV Core-core repulsion = 24072.280504 eV Total energy + Delta-G solvation = -3652.236848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21618 -40.07388 -38.86142 -38.16691 -35.50288 -34.82114 -34.01780 -32.73232 -29.73487 -28.00819 -27.61016 -27.43452 -27.09707 -25.32265 -23.30343 -22.95345 -21.17406 -20.65902 -20.07329 -18.90814 -18.16534 -17.83288 -17.19659 -16.94617 -16.60808 -16.40813 -16.07735 -15.48378 -15.23920 -15.11442 -14.86771 -14.78216 -14.36157 -14.22565 -14.02993 -13.81852 -13.28862 -13.17746 -13.08077 -13.06897 -12.73154 -12.65741 -12.59070 -12.30796 -12.14918 -12.07494 -11.95859 -11.82597 -11.54365 -11.49471 -11.42140 -11.28255 -11.07500 -10.75182 -10.43291 -10.40816 -10.03394 -9.61709 -8.02064 -6.18839 0.39800 1.39346 1.44061 1.47199 1.55246 2.17672 2.43766 2.58377 3.21774 3.37237 3.74468 3.93680 3.99634 4.09582 4.16061 4.25953 4.34601 4.46687 4.47028 4.56026 4.66438 4.68944 4.70556 4.80875 4.82537 4.92094 4.98091 5.01973 5.04068 5.05800 5.15300 5.16180 5.23377 5.27799 5.30124 5.36875 5.40664 5.48036 5.50589 5.62777 5.65572 5.66515 5.99260 6.08996 6.17600 6.32289 6.40099 6.73861 6.85913 7.01761 7.49253 8.97269 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.003221 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.873044 B = 8691.547155 C = 8980.565283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.526 4.526 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.147 3.853 13 N -0.686 5.686 14 C 0.490 3.510 15 O -0.526 6.526 16 C 0.505 3.495 17 O -0.553 6.553 18 N -0.567 5.567 19 C 0.114 3.886 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.115 4.115 24 C -0.137 4.137 25 C 0.101 3.899 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.029 0.971 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 -1.673 23.455 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.025 3.975 13 N -0.338 5.338 14 C 0.271 3.729 15 O -0.404 6.404 16 C 0.288 3.712 17 O -0.432 6.432 18 N -0.300 5.300 19 C -0.007 4.007 20 C -0.169 4.169 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.174 4.174 25 C -0.021 4.021 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.246 0.754 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.093 0.907 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.769 -1.742 23.338 23.704 hybrid contribution -0.047 0.155 -1.621 1.629 sum 3.723 -1.587 21.717 22.091 Atomic orbital electron populations 1.21695 0.97440 0.98826 1.00059 1.18375 0.93065 0.92931 0.90660 1.21684 0.98119 0.98138 1.00023 1.21242 1.31805 1.12265 0.91140 0.92990 1.25513 0.95121 0.95553 1.01206 1.69933 1.37036 1.23422 1.23633 0.85695 0.78760 0.78354 0.79618 1.20475 1.21115 1.19691 1.21482 0.97726 0.95377 0.82964 1.46083 1.51187 1.31444 1.05118 1.20275 0.82000 0.85501 0.85170 1.90713 1.37096 1.26069 1.86538 1.20098 0.81285 0.84401 0.85424 1.90722 1.38804 1.26854 1.86811 1.47812 1.48908 1.28880 1.04395 1.22052 0.89879 0.85479 1.03338 1.22251 0.95468 1.00640 0.98534 1.21852 0.99627 0.94131 1.00123 1.21744 0.98984 0.97331 0.98237 1.21735 0.98192 0.97928 0.97381 1.22288 0.95773 1.00758 0.98617 1.21840 0.97778 0.98441 0.84027 0.95432 0.91814 0.95770 0.95848 0.91835 0.95474 0.93063 0.92916 0.92778 0.75353 0.86651 0.90727 0.93192 0.90546 0.92055 0.88995 0.95232 0.92848 0.93026 0.90210 0.88111 0.88762 0.90681 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.08 71.99 0.58 -5.10 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 4 C -0.53 -27.59 8.01 25.60 0.21 -27.39 16 5 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 6 C 0.03 1.36 5.15 84.65 0.44 1.79 16 7 N -0.90 -48.81 9.35 21.45 0.20 -48.61 16 8 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 C 0.15 6.19 4.50 86.38 0.39 6.58 16 13 N -0.69 -25.75 4.95 -464.42 -2.30 -28.05 16 14 C 0.49 17.05 7.08 87.27 0.62 17.67 16 15 O -0.53 -18.65 11.13 -3.26 -0.04 -18.69 16 16 C 0.51 15.80 6.30 87.27 0.55 16.35 16 17 O -0.55 -19.77 15.91 -3.26 -0.05 -19.82 16 18 N -0.57 -13.10 1.67 -824.62 -1.38 -14.48 16 19 C 0.11 2.23 4.91 86.24 0.42 2.65 16 20 C -0.13 -2.84 4.51 30.81 0.14 -2.70 16 21 C -0.12 -2.03 5.49 30.68 0.17 -1.86 16 22 C -0.13 -2.48 5.40 30.73 0.17 -2.31 16 23 C -0.11 -1.71 5.75 30.88 0.18 -1.53 16 24 C -0.14 -1.58 5.45 30.69 0.17 -1.42 16 25 C 0.10 1.75 6.01 86.73 0.52 2.27 16 26 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 27 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 31 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 32 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 33 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 35 H 0.41 15.38 5.64 -92.71 -0.52 14.86 16 36 H 0.12 1.40 6.07 -2.39 -0.01 1.39 16 37 H 0.07 1.73 6.69 -2.39 -0.02 1.72 16 38 H 0.05 1.47 4.80 -2.39 -0.01 1.46 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.09 5.48 -2.39 -0.01 1.08 16 42 H 0.03 0.77 5.38 -2.39 -0.01 0.76 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 0.89 7.87 -2.39 -0.02 0.87 16 45 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.09 0.92 3.35 -2.38 -0.01 0.91 16 48 H 0.07 1.62 6.79 -2.39 -0.02 1.60 16 49 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -59.82 354.52 4.00 -55.82 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.44 Total: 27.10 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.10 Total: 2.26 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -3.48 Total: -91.14 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.09 Total: -38.51 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -59.82 4.00 -55.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817849356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.762 kcal (2) G-P(sol) polarization free energy of solvation -59.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds