Wall clock time and date at job start Fri Apr 10 2020 22:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47014 * 2 1 4 4 C 1.53005 * 109.47479 * 119.99661 * 2 1 3 5 5 C 1.50696 * 109.47166 * 175.00097 * 4 2 1 6 6 O 1.21278 * 120.00106 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00096 * 180.02562 * 5 4 2 8 8 C 1.48205 * 119.97247 * 179.97438 * 7 5 4 9 9 C 1.47144 * 110.34272 * 102.46270 * 8 7 5 10 10 C 1.53800 * 111.77574 * 58.33108 * 9 8 7 11 11 N 1.43521 * 107.93423 * 281.56181 * 10 9 8 12 12 C 1.34776 * 119.01092 * 273.72044 * 11 10 9 13 13 O 1.21273 * 120.00420 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99717 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46892 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47013 * 179.97438 * 15 14 12 17 17 H 1.08006 * 120.00347 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00343 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00199 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99612 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47342 * 89.99967 * 20 18 16 22 22 H 1.48500 * 109.47321 * 209.99628 * 20 18 16 23 23 H 1.48505 * 109.47268 * 329.99828 * 20 18 16 24 24 C 1.48854 * 122.04768 * 93.72943 * 11 10 9 25 25 C 1.43624 * 119.96730 * 359.97438 * 7 5 4 26 26 H 1.09006 * 109.47110 * 299.99778 * 1 2 3 27 27 H 1.08990 * 109.47355 * 60.00036 * 1 2 3 28 28 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47316 * 240.00125 * 2 1 3 30 30 H 1.08996 * 109.46721 * 299.99878 * 3 2 1 31 31 H 1.08997 * 109.46976 * 59.99917 * 3 2 1 32 32 H 1.08997 * 109.46925 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46510 * 55.00093 * 4 2 1 34 34 H 1.08994 * 109.47024 * 295.00094 * 4 2 1 35 35 H 1.08996 * 109.32833 * 342.19752 * 8 7 5 36 36 H 1.08999 * 109.32653 * 222.72653 * 8 7 5 37 37 H 1.09002 * 109.00843 * 178.90189 * 9 8 7 38 38 H 1.09002 * 109.00565 * 297.76830 * 9 8 7 39 39 H 1.08996 * 109.76411 * 41.25511 * 10 9 8 40 40 H 1.08999 * 109.75878 * 162.01846 * 10 9 8 41 41 H 1.09006 * 109.46706 * 300.00197 * 14 12 11 42 42 H 1.08997 * 109.47205 * 59.99847 * 14 12 11 43 43 H 1.09006 * 109.47130 * 299.99354 * 15 14 12 44 44 H 1.08997 * 109.47796 * 59.99626 * 15 14 12 45 45 H 0.97001 * 119.99857 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.48102 * 200.63420 * 24 11 10 47 47 H 1.09004 * 109.49239 * 80.60196 * 24 11 10 48 48 H 1.09002 * 108.87474 * 31.47400 * 25 7 5 49 49 H 1.09005 * 108.87368 * 150.01452 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 8 4.1450 -0.3739 0.2403 7 7 4.2150 -1.4320 2.1890 8 6 5.6920 -1.5384 2.1287 9 6 6.3135 -0.5349 3.0072 10 6 5.8553 -0.6924 4.4669 11 7 4.5460 -0.1161 4.5838 12 6 4.4325 1.2048 4.8260 13 8 5.4279 1.8879 4.9415 14 6 3.0686 1.8330 4.9535 15 6 3.2204 3.3310 5.2250 16 6 1.8566 3.9593 5.3518 17 1 0.9700 3.3511 5.2486 18 6 1.7403 5.3107 5.5995 19 7 0.5501 5.8591 5.7097 20 14 3.2736 6.3628 5.7773 21 1 3.6671 6.8930 4.4472 22 1 2.9938 7.4939 6.6979 23 1 4.3789 5.5380 6.3281 24 6 3.3087 -0.9321 4.4459 25 6 3.5002 -1.9705 3.3123 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1582 2.1369 35 1 6.0239 -1.3752 1.1034 36 1 5.9952 -2.5353 2.4488 37 1 7.3969 -0.6451 2.9613 38 1 6.0429 0.4608 2.6557 39 1 5.8190 -1.7495 4.7298 40 1 6.5470 -0.1710 5.1285 41 1 2.5131 1.6864 4.0271 42 1 2.5294 1.3667 5.7780 43 1 3.7760 3.4779 6.1512 44 1 3.7595 3.7970 4.4002 45 1 0.4684 6.8097 5.8844 46 1 2.4688 -0.2808 4.2041 47 1 3.1086 -1.4506 5.3836 48 1 2.5207 -2.3112 2.9765 49 1 4.0535 -2.8229 3.7066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830663007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:12 Heat of formation + Delta-G solvation = -82.826324 kcal Electronic energy + Delta-G solvation = -27853.857763 eV Core-core repulsion = 24201.523697 eV Total energy + Delta-G solvation = -3652.334067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82632 -39.44881 -37.25096 -35.58238 -34.42473 -33.87848 -33.23514 -31.24481 -28.94227 -28.27383 -27.05437 -26.96474 -25.28968 -23.32218 -22.45454 -20.73415 -20.28423 -19.21962 -18.44592 -17.56465 -16.94748 -16.84007 -16.10072 -15.87130 -15.60587 -15.34980 -14.55188 -14.21674 -14.08770 -13.98205 -13.81738 -13.57902 -13.31493 -13.23059 -12.86607 -12.58352 -12.44149 -12.23162 -12.19401 -11.97869 -11.85290 -11.67431 -11.30378 -11.27349 -11.12323 -10.99792 -10.95849 -10.82790 -10.65057 -10.15253 -10.03780 -9.78523 -9.69258 -9.25072 -9.17285 -8.88779 -8.51952 -8.46964 -6.03462 -4.01967 2.53261 2.79087 3.07028 3.22032 3.38230 3.44768 3.55652 4.32405 4.51068 4.56826 4.60425 4.70151 4.71919 4.81819 4.87261 5.06684 5.14740 5.19386 5.26169 5.32266 5.32841 5.38634 5.45238 5.49600 5.52717 5.57498 5.63814 5.68434 5.79104 5.92250 5.96271 6.00875 6.04010 6.05187 6.15979 6.18974 6.34945 6.40542 6.58874 6.63365 6.80045 7.25237 7.36219 7.42521 7.53505 7.78782 8.10332 8.48573 8.62166 8.98953 9.60065 11.09275 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.004978 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.793948 B = 5623.528699 C = 7096.586542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.157 4.157 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.533 6.533 7 N -0.606 5.606 8 C 0.121 3.879 9 C -0.159 4.159 10 C 0.123 3.877 11 N -0.617 5.617 12 C 0.508 3.492 13 O -0.536 6.536 14 C -0.120 4.120 15 C 0.002 3.998 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.071 3.929 19 N -0.903 5.903 20 Si 0.875 3.125 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.086 3.914 25 C 0.096 3.904 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.263 0.737 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -21.969 -7.058 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.214 4.214 4 C -0.179 4.179 5 C 0.306 3.694 6 O -0.410 6.410 7 N -0.339 5.339 8 C -0.001 4.001 9 C -0.199 4.199 10 C -0.001 4.001 11 N -0.352 5.352 12 C 0.298 3.702 13 O -0.412 6.412 14 C -0.160 4.160 15 C -0.036 4.036 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.542 5.542 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.038 4.038 25 C -0.030 4.030 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.001 -21.199 -7.477 23.029 hybrid contribution 0.632 0.559 0.276 0.888 sum 5.633 -20.641 -7.200 22.575 Atomic orbital electron populations 1.21870 0.94840 1.01407 1.02503 1.20847 0.95171 0.97098 0.96565 1.21976 1.02903 0.94766 1.01736 1.21881 0.91649 1.02661 1.01675 1.20831 0.90382 0.76529 0.81657 1.90655 1.70449 1.46358 1.33496 1.47596 1.07200 1.58819 1.20300 1.20660 0.78882 0.98785 1.01758 1.21530 1.00691 1.01327 0.96340 1.20932 0.85085 0.98177 0.95941 1.47852 1.05791 1.08603 1.72974 1.21550 0.93171 0.80904 0.74579 1.90647 1.39977 1.61154 1.49383 1.21682 0.91703 1.00031 1.02565 1.19363 0.97706 0.89201 0.97313 1.21080 0.91662 0.93953 1.49424 0.90973 1.24948 0.95787 0.97929 0.94425 1.69907 1.22456 1.12097 1.49725 0.86829 0.84344 0.80120 0.78475 1.20236 1.21420 1.18578 1.22993 0.87811 0.94538 0.98499 1.21662 0.98379 0.95951 0.86992 0.92103 0.92403 0.92959 0.90885 0.93007 0.92489 0.91014 0.89065 0.88510 0.89304 0.91245 0.90357 0.90812 0.91090 0.89962 0.90054 0.89752 0.95901 0.96412 0.92729 0.88999 0.90235 0.89222 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.08 -0.87 2.57 -90.62 -0.23 -1.10 16 3 C -0.16 -2.16 8.93 37.16 0.33 -1.83 16 4 C -0.14 -1.38 3.73 -27.88 -0.10 -1.48 16 5 C 0.52 6.39 7.39 -10.99 -0.08 6.31 16 6 O -0.53 -8.53 13.40 5.56 0.07 -8.46 16 7 N -0.61 -6.10 2.46 -176.63 -0.43 -6.54 16 8 C 0.12 1.18 5.69 -5.92 -0.03 1.15 16 9 C -0.16 -1.82 5.64 -29.13 -0.16 -1.99 16 10 C 0.12 1.39 5.34 -5.20 -0.03 1.37 16 11 N -0.62 -8.10 2.50 -172.37 -0.43 -8.53 16 12 C 0.51 9.29 7.38 -10.98 -0.08 9.21 16 13 O -0.54 -11.97 15.49 5.56 0.09 -11.88 16 14 C -0.12 -2.32 4.01 -27.88 -0.11 -2.43 16 15 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 16 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 17 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 20 Si 0.88 22.82 27.47 -169.99 -4.67 18.15 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 24 C 0.09 0.78 6.50 -1.73 -0.01 0.76 16 25 C 0.10 0.67 5.06 -4.55 -0.02 0.64 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.15 5.95 -51.93 -0.31 0.85 16 33 H 0.09 0.64 7.37 -51.93 -0.38 0.26 16 34 H 0.10 0.96 7.32 -51.93 -0.38 0.58 16 35 H 0.09 1.01 7.13 -51.93 -0.37 0.64 16 36 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 39 H 0.07 0.58 7.58 -51.93 -0.39 0.19 16 40 H 0.08 1.09 7.41 -51.93 -0.38 0.71 16 41 H 0.08 1.47 7.40 -51.93 -0.38 1.08 16 42 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 43 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 44 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.09 0.89 5.27 -51.93 -0.27 0.61 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.44 6.38 -51.93 -0.33 0.11 16 49 H 0.08 0.41 7.72 -51.93 -0.40 0.01 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -36.24 375.39 -8.24 -44.48 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.58 Total: -2.03 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.72 Total: -3.72 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.09 Total: -42.19 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.16 Total: -20.34 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.24 -8.24 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830663007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.348 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds