Wall clock time and date at job start Fri Apr 10 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47014 * 2 1 4 4 C 1.53005 * 109.47479 * 119.99661 * 2 1 3 5 5 C 1.50696 * 109.47166 * 175.00097 * 4 2 1 6 6 O 1.21278 * 120.00106 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00096 * 180.02562 * 5 4 2 8 8 C 1.48205 * 119.97247 * 179.97438 * 7 5 4 9 9 C 1.47144 * 110.34272 * 102.46270 * 8 7 5 10 10 C 1.53800 * 111.77574 * 58.33108 * 9 8 7 11 11 N 1.43521 * 107.93423 * 281.56181 * 10 9 8 12 12 C 1.34776 * 119.01092 * 273.72044 * 11 10 9 13 13 O 1.21273 * 120.00420 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99717 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46892 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47013 * 179.97438 * 15 14 12 17 17 H 1.08006 * 120.00347 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00343 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00199 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99612 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47342 * 89.99967 * 20 18 16 22 22 H 1.48500 * 109.47321 * 209.99628 * 20 18 16 23 23 H 1.48505 * 109.47268 * 329.99828 * 20 18 16 24 24 C 1.48854 * 122.04768 * 93.72943 * 11 10 9 25 25 C 1.43624 * 119.96730 * 359.97438 * 7 5 4 26 26 H 1.09006 * 109.47110 * 299.99778 * 1 2 3 27 27 H 1.08990 * 109.47355 * 60.00036 * 1 2 3 28 28 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47316 * 240.00125 * 2 1 3 30 30 H 1.08996 * 109.46721 * 299.99878 * 3 2 1 31 31 H 1.08997 * 109.46976 * 59.99917 * 3 2 1 32 32 H 1.08997 * 109.46925 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46510 * 55.00093 * 4 2 1 34 34 H 1.08994 * 109.47024 * 295.00094 * 4 2 1 35 35 H 1.08996 * 109.32833 * 342.19752 * 8 7 5 36 36 H 1.08999 * 109.32653 * 222.72653 * 8 7 5 37 37 H 1.09002 * 109.00843 * 178.90189 * 9 8 7 38 38 H 1.09002 * 109.00565 * 297.76830 * 9 8 7 39 39 H 1.08996 * 109.76411 * 41.25511 * 10 9 8 40 40 H 1.08999 * 109.75878 * 162.01846 * 10 9 8 41 41 H 1.09006 * 109.46706 * 300.00197 * 14 12 11 42 42 H 1.08997 * 109.47205 * 59.99847 * 14 12 11 43 43 H 1.09006 * 109.47130 * 299.99354 * 15 14 12 44 44 H 1.08997 * 109.47796 * 59.99626 * 15 14 12 45 45 H 0.97001 * 119.99857 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.48102 * 200.63420 * 24 11 10 47 47 H 1.09004 * 109.49239 * 80.60196 * 24 11 10 48 48 H 1.09002 * 108.87474 * 31.47400 * 25 7 5 49 49 H 1.09005 * 108.87368 * 150.01452 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 8 4.1450 -0.3739 0.2403 7 7 4.2150 -1.4320 2.1890 8 6 5.6920 -1.5384 2.1287 9 6 6.3135 -0.5349 3.0072 10 6 5.8553 -0.6924 4.4669 11 7 4.5460 -0.1161 4.5838 12 6 4.4325 1.2048 4.8260 13 8 5.4279 1.8879 4.9415 14 6 3.0686 1.8330 4.9535 15 6 3.2204 3.3310 5.2250 16 6 1.8566 3.9593 5.3518 17 1 0.9700 3.3511 5.2486 18 6 1.7403 5.3107 5.5995 19 7 0.5501 5.8591 5.7097 20 14 3.2736 6.3628 5.7773 21 1 3.6671 6.8930 4.4472 22 1 2.9938 7.4939 6.6979 23 1 4.3789 5.5380 6.3281 24 6 3.3087 -0.9321 4.4459 25 6 3.5002 -1.9705 3.3123 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1582 2.1369 35 1 6.0239 -1.3752 1.1034 36 1 5.9952 -2.5353 2.4488 37 1 7.3969 -0.6451 2.9613 38 1 6.0429 0.4608 2.6557 39 1 5.8190 -1.7495 4.7298 40 1 6.5470 -0.1710 5.1285 41 1 2.5131 1.6864 4.0271 42 1 2.5294 1.3667 5.7780 43 1 3.7760 3.4779 6.1512 44 1 3.7595 3.7970 4.4002 45 1 0.4684 6.8097 5.8844 46 1 2.4688 -0.2808 4.2041 47 1 3.1086 -1.4506 5.3836 48 1 2.5207 -2.3112 2.9765 49 1 4.0535 -2.8229 3.7066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830663007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:11 Heat of formation + Delta-G solvation = -106.569835 kcal Electronic energy + Delta-G solvation = -27854.887359 eV Core-core repulsion = 24201.523697 eV Total energy + Delta-G solvation = -3653.363662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78836 -40.64286 -38.32357 -36.51766 -35.68498 -35.44574 -34.48108 -33.18027 -29.79035 -29.35122 -28.32802 -27.97307 -26.62674 -24.18291 -23.73908 -22.36185 -21.17374 -20.22148 -19.59852 -19.15241 -18.19351 -17.87153 -17.49803 -16.80954 -16.60275 -16.51438 -16.25677 -15.59080 -15.29319 -15.03064 -14.82165 -14.74849 -14.59927 -14.38189 -14.11488 -13.85117 -13.72373 -13.44664 -13.24428 -13.04961 -12.96561 -12.84718 -12.71677 -12.39994 -12.15711 -12.06978 -12.01868 -12.00505 -11.91414 -11.78956 -11.69262 -11.56755 -11.40814 -10.80747 -10.72974 -10.63664 -9.80888 -9.48754 -8.34060 -6.35725 1.28032 1.30389 1.45003 1.63709 1.66508 1.96001 2.23793 2.31419 3.01721 3.56084 3.68283 3.85392 3.89471 3.92748 3.99339 4.02054 4.18821 4.27794 4.31865 4.35345 4.41649 4.52350 4.57746 4.63686 4.67800 4.72803 4.74556 4.80244 4.83333 4.85482 4.89487 4.95850 5.03468 5.06288 5.12349 5.20505 5.28808 5.29703 5.38770 5.43271 5.50997 5.57812 5.63744 5.78405 6.20703 6.31175 6.48479 6.69629 7.23693 7.26496 7.29556 8.81304 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.004978 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.793948 B = 5623.528699 C = 7096.586542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.155 4.155 4 C -0.135 4.135 5 C 0.506 3.494 6 O -0.582 6.582 7 N -0.604 5.604 8 C 0.121 3.879 9 C -0.150 4.150 10 C 0.122 3.878 11 N -0.603 5.603 12 C 0.504 3.496 13 O -0.589 6.589 14 C -0.111 4.111 15 C 0.007 3.993 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.019 3.981 19 N -0.939 5.939 20 Si 0.929 3.071 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.265 1.265 24 C 0.074 3.926 25 C 0.092 3.908 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.017 0.983 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.008 0.992 44 H -0.004 1.004 45 H 0.267 0.733 46 H 0.084 0.916 47 H 0.115 0.885 48 H 0.121 0.879 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 -25.693 -6.339 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 C -0.212 4.212 4 C -0.174 4.174 5 C 0.296 3.704 6 O -0.462 6.462 7 N -0.336 5.336 8 C 0.000 4.000 9 C -0.189 4.189 10 C -0.002 4.002 11 N -0.336 5.336 12 C 0.293 3.707 13 O -0.470 6.470 14 C -0.151 4.151 15 C -0.031 4.031 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.179 4.179 19 N -0.579 5.579 20 Si 0.754 3.246 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.189 1.189 24 C -0.048 4.048 25 C -0.032 4.032 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.036 0.964 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.026 0.974 44 H 0.015 0.985 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.133 0.867 48 H 0.139 0.861 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.616 -24.997 -6.737 26.297 hybrid contribution 0.724 1.657 0.032 1.808 sum 5.340 -23.340 -6.705 24.864 Atomic orbital electron populations 1.21825 0.93149 1.02967 1.02123 1.20815 0.96429 0.94920 0.97321 1.21942 1.00996 0.97222 1.01051 1.21918 0.90054 1.04696 1.00750 1.21370 0.91471 0.75992 0.81574 1.90641 1.71493 1.48421 1.35650 1.47727 1.07401 1.57861 1.20566 1.20696 0.78875 1.00271 1.00195 1.21447 1.01969 0.98807 0.96705 1.21117 0.83542 1.00374 0.95137 1.47862 1.08201 1.07061 1.70444 1.21296 0.91745 0.82747 0.74872 1.90623 1.41077 1.62973 1.52332 1.21480 0.93258 0.96417 1.03918 1.19198 0.95126 0.93119 0.95674 1.21372 0.92597 0.93972 1.48228 0.92586 1.25690 0.98235 0.99391 0.94562 1.69998 1.24144 1.12703 1.51089 0.85970 0.81008 0.78901 0.78678 1.19997 1.19906 1.18920 1.23441 0.85438 0.94647 1.01312 1.21984 1.00414 0.95722 0.85121 0.92676 0.92651 0.90374 0.91452 0.92813 0.93988 0.93877 0.84974 0.88312 0.91527 0.86789 0.88858 0.96362 0.86058 0.92244 0.89002 0.87567 0.97382 0.98546 0.92364 0.89763 0.86736 0.86126 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.19 71.98 0.66 -1.78 16 2 C -0.08 -1.64 2.57 -10.79 -0.03 -1.66 16 3 C -0.15 -4.49 8.93 71.98 0.64 -3.85 16 4 C -0.13 -2.35 3.73 29.85 0.11 -2.24 16 5 C 0.51 11.89 7.39 87.66 0.65 12.54 16 6 O -0.58 -19.20 13.40 -3.02 -0.04 -19.24 16 7 N -0.60 -10.37 2.46 -831.13 -2.04 -12.41 16 8 C 0.12 2.09 5.69 84.23 0.48 2.57 16 9 C -0.15 -3.29 5.64 29.04 0.16 -3.13 16 10 C 0.12 2.46 5.34 87.20 0.47 2.92 16 11 N -0.60 -14.53 2.50 -817.66 -2.05 -16.57 16 12 C 0.50 18.40 7.38 87.66 0.65 19.05 16 13 O -0.59 -27.25 15.49 -3.01 -0.05 -27.30 16 14 C -0.11 -4.26 4.01 29.85 0.12 -4.14 16 15 C 0.01 0.35 3.33 29.85 0.10 0.45 16 16 C -0.52 -30.33 9.66 25.60 0.25 -30.08 16 17 H 0.06 3.35 7.99 -2.91 -0.02 3.33 16 18 C 0.02 1.16 5.47 84.66 0.46 1.62 16 19 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 20 Si 0.93 47.91 27.47 68.60 1.88 49.80 16 21 H -0.27 -13.95 7.11 99.48 0.71 -13.25 16 22 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.26 -13.69 6.54 99.48 0.65 -13.04 16 24 C 0.07 1.02 6.50 86.58 0.56 1.58 16 25 C 0.09 0.78 5.06 87.57 0.44 1.22 16 26 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.54 7.96 -2.39 -0.02 1.52 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.49 5.95 -2.39 -0.01 1.48 16 33 H 0.13 1.21 7.37 -2.38 -0.02 1.19 16 34 H 0.10 1.72 7.32 -2.39 -0.02 1.70 16 35 H 0.07 1.48 7.13 -2.39 -0.02 1.47 16 36 H 0.11 1.01 8.05 -2.39 -0.02 0.99 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.02 0.59 7.89 -2.39 -0.02 0.57 16 39 H 0.12 1.29 7.58 -2.39 -0.02 1.28 16 40 H 0.06 1.52 7.41 -2.39 -0.02 1.50 16 41 H 0.09 3.30 7.40 -2.38 -0.02 3.28 16 42 H 0.11 3.57 8.08 -2.39 -0.02 3.55 16 43 H 0.01 0.42 7.16 -2.38 -0.02 0.41 16 44 H 0.00 -0.21 7.53 -2.39 -0.02 -0.23 16 45 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 46 H 0.08 1.33 5.27 -2.39 -0.01 1.32 16 47 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.12 0.39 6.38 -2.39 -0.02 0.37 16 49 H 0.12 0.29 7.72 -2.38 -0.02 0.27 16 Total: -1.00 -85.60 375.39 4.59 -81.00 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.86 Total: 8.12 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.73 Total: -4.94 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -3.79 Total: -87.45 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.09 Total: -46.53 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.88 Total: 49.80 kcal Total: -85.60 4.59 -81.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830663007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.565 kcal (2) G-P(sol) polarization free energy of solvation -85.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds