Wall clock time and date at job start Fri Apr 10 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.53004 * 109.47042 * 119.99834 * 2 1 3 5 5 N 1.46504 * 109.46904 * 175.00185 * 4 2 1 6 6 C 1.46500 * 119.99660 * 269.99645 * 5 4 2 7 7 C 1.50701 * 109.47606 * 270.00153 * 6 5 4 8 8 H 1.08002 * 119.99635 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00194 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00082 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99797 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47370 * 90.00167 * 11 9 7 13 13 H 1.48496 * 109.46925 * 210.00394 * 11 9 7 14 14 H 1.48507 * 109.47253 * 329.99867 * 11 9 7 15 15 C 1.34770 * 119.99908 * 90.00495 * 5 4 2 16 16 O 1.21621 * 119.99838 * 180.02562 * 15 5 4 17 17 C 1.47101 * 120.00354 * 359.97438 * 15 5 4 18 18 C 1.32990 * 120.00299 * 180.02562 * 17 15 5 19 19 C 1.50701 * 120.00190 * 179.97438 * 18 17 15 20 20 N 1.46908 * 109.46808 * 125.00108 * 19 18 17 21 21 C 1.47024 * 110.99261 * 46.32548 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00088 * 20 19 18 26 26 H 1.09000 * 109.47002 * 299.99965 * 1 2 3 27 27 H 1.09005 * 109.46854 * 59.99991 * 1 2 3 28 28 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47497 * 240.00017 * 2 1 3 30 30 H 1.09000 * 109.47165 * 60.00134 * 3 2 1 31 31 H 1.09006 * 109.47253 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46991 * 299.99790 * 3 2 1 33 33 H 1.09001 * 109.47129 * 55.00340 * 4 2 1 34 34 H 1.08998 * 109.47188 * 295.00045 * 4 2 1 35 35 H 1.09005 * 109.47223 * 30.00450 * 6 5 4 36 36 H 1.09005 * 109.46895 * 150.00040 * 6 5 4 37 37 H 0.96995 * 119.99856 * 179.97438 * 10 9 7 38 38 H 1.08001 * 119.99863 * 0.02562 * 17 15 5 39 39 H 1.08001 * 119.99838 * 0.02562 * 18 17 15 40 40 H 1.09003 * 109.46797 * 5.00628 * 19 18 17 41 41 H 1.08999 * 109.47310 * 245.00189 * 19 18 17 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5613 7 6 4.3421 -3.0660 1.5961 8 1 4.0430 -2.8973 2.6200 9 6 4.9219 -4.2638 1.2356 10 7 5.2866 -4.4690 -0.0112 11 14 5.1893 -5.5953 2.5182 12 1 3.9946 -6.4754 2.5746 13 1 6.3815 -6.4019 2.1532 14 1 5.4045 -4.9671 3.8465 15 6 4.2675 0.1492 1.7157 16 8 5.4796 0.0622 1.6666 17 6 3.6392 1.3198 2.3472 18 6 4.3965 2.2827 2.8649 19 6 3.7528 3.4822 3.5114 20 7 4.2630 3.6331 4.8807 21 6 5.7265 3.4975 4.9154 22 6 6.2090 3.6027 6.3647 23 8 5.7659 4.8432 6.9214 24 6 4.3453 5.0073 6.9042 25 6 3.8440 4.9175 5.4604 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1370 35 1 3.4757 -2.3722 -0.2267 36 1 5.0851 -1.7021 0.1325 37 1 5.6948 -5.3116 -0.2647 38 1 2.5628 1.3973 2.3905 39 1 5.4728 2.2054 2.8213 40 1 2.6720 3.3434 3.5396 41 1 3.9894 4.3764 2.9349 42 1 6.1792 4.2923 4.3225 43 1 6.0128 2.5288 4.5060 44 1 7.2979 3.5607 6.3897 45 1 5.7995 2.7761 6.9455 46 1 3.8810 4.2217 7.5002 47 1 4.0863 5.9810 7.3201 48 1 2.7562 4.9848 5.4479 49 1 4.2666 5.7354 4.8769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865027051.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:14 Heat of formation + Delta-G solvation = -59.962096 kcal Electronic energy + Delta-G solvation = -26531.038641 eV Core-core repulsion = 22879.696042 eV Total energy + Delta-G solvation = -3651.342599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.84905 -39.26377 -36.56222 -36.21452 -33.84468 -32.88891 -32.22354 -31.38149 -28.76195 -27.45520 -27.01314 -25.71033 -24.75067 -24.30037 -22.88613 -20.90943 -20.27188 -19.90966 -18.05022 -17.09567 -16.59867 -16.40321 -16.27573 -15.59281 -15.31929 -15.07494 -14.98949 -14.61635 -14.51530 -14.16426 -14.06405 -13.51419 -13.15136 -13.04358 -12.63708 -12.45650 -12.25542 -12.22398 -12.08163 -11.78111 -11.67496 -11.61525 -11.28385 -11.07009 -10.98094 -10.89252 -10.77384 -10.70493 -10.54627 -10.32365 -10.10790 -9.89911 -9.59677 -9.32649 -8.94499 -8.52832 -8.41827 -7.60574 -6.02565 -4.07121 1.69285 3.31292 3.37910 3.42615 3.53685 3.68077 3.97157 4.04975 4.46075 4.58182 4.71310 4.74777 4.91223 4.98051 5.00827 5.04433 5.13415 5.14005 5.24551 5.30263 5.31422 5.33674 5.42156 5.48249 5.53418 5.62033 5.69621 5.70204 5.72417 5.75108 5.85655 5.93804 6.08151 6.19516 6.26788 6.44824 6.51217 6.53534 6.59633 6.68060 6.71832 6.90941 7.12794 7.46690 7.57880 7.94312 8.25619 8.45788 8.92371 9.12542 9.57988 11.05425 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003578 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.893505 B = 7823.623156 C = 9546.709613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.147 4.147 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.247 3.753 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.534 3.466 16 O -0.547 6.547 17 C -0.179 4.179 18 C -0.104 4.104 19 C 0.084 3.916 20 N -0.532 5.532 21 C 0.009 3.991 22 C 0.063 3.937 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.016 3.984 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 18.628 7.413 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.204 4.204 4 C -0.009 4.009 5 N -0.319 5.319 6 C 0.127 3.873 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.323 3.677 16 O -0.426 6.426 17 C -0.201 4.201 18 C -0.124 4.124 19 C -0.043 4.043 20 N -0.257 5.257 21 C -0.119 4.119 22 C -0.014 4.014 23 O -0.307 6.307 24 C -0.013 4.013 25 C -0.112 4.112 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.665 18.168 7.612 21.137 hybrid contribution 0.156 -0.462 -0.097 0.497 sum -7.509 17.706 7.515 20.649 Atomic orbital electron populations 1.21758 0.95029 1.01848 1.01348 1.21581 0.95406 0.96635 1.00111 1.22012 1.01577 0.95923 1.00920 1.21559 0.81593 1.01264 0.96466 1.48112 1.05340 1.21702 1.56711 1.19268 0.94131 0.80904 0.92966 1.21445 1.40355 0.98961 0.95618 0.92453 1.24931 0.95281 0.98418 0.95470 1.69933 1.41724 1.25185 1.16601 0.86505 0.77683 0.81488 0.81811 1.20651 1.21104 1.19879 1.18355 0.86904 0.83062 0.79415 1.90750 1.13956 1.79291 1.58639 1.23109 1.00435 0.95303 1.01265 1.23436 1.00779 0.93763 0.94431 1.21250 0.99779 0.95821 0.87412 1.62352 1.11193 1.32315 1.19865 1.22943 0.87766 1.03133 0.98010 1.22708 0.99865 0.86459 0.92359 1.87970 1.21789 1.38614 1.82305 1.22642 0.81537 1.02133 0.95021 1.22815 1.01414 0.90341 0.96608 0.92874 0.92872 0.92441 0.90559 0.92826 0.92306 0.93180 0.89969 0.91499 0.95034 0.93923 0.92756 0.85601 0.85582 0.89715 0.93297 0.93775 0.88306 0.88274 0.92030 0.92185 0.88559 0.89555 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.12 -1.61 3.13 -90.62 -0.28 -1.89 16 3 C -0.15 -1.85 7.61 37.16 0.28 -1.57 16 4 C 0.12 1.88 4.94 -4.04 -0.02 1.86 16 5 N -0.59 -12.52 2.34 -176.45 -0.41 -12.93 16 6 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 7 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.53 11.29 6.40 -12.67 -0.08 11.21 16 16 O -0.55 -13.97 15.80 5.26 0.08 -13.89 16 17 C -0.18 -2.77 6.65 -37.81 -0.25 -3.03 16 18 C -0.10 -1.44 8.15 -36.13 -0.29 -1.74 16 19 C 0.08 0.89 5.73 -4.97 -0.03 0.86 16 20 N -0.53 -5.80 4.87 -235.73 -1.15 -6.95 16 21 C 0.01 0.10 5.10 -3.70 -0.02 0.09 16 22 C 0.06 0.65 7.01 37.21 0.26 0.91 16 23 O -0.39 -4.32 10.83 -35.23 -0.38 -4.70 16 24 C 0.06 0.55 7.01 37.21 0.26 0.81 16 25 C 0.02 0.14 5.63 -3.71 -0.02 0.12 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.57 6.51 -51.93 -0.34 0.24 16 31 H 0.06 0.89 5.86 -51.93 -0.30 0.58 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.07 0.94 6.09 -51.93 -0.32 0.62 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 1.62 4.29 -52.49 -0.23 1.39 16 39 H 0.13 1.95 5.99 -52.49 -0.31 1.63 16 40 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 41 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.22 6.02 -51.93 -0.31 0.90 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -33.58 382.59 -9.16 -42.74 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.48 Total: -0.26 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.30 Total: -0.78 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.83 Total: -45.90 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.30 Total: -18.59 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.58 -9.16 -42.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027051.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.226 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds