Wall clock time and date at job start Fri Apr 10 2020 22:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.53004 * 109.47042 * 119.99834 * 2 1 3 5 5 N 1.46504 * 109.46904 * 175.00185 * 4 2 1 6 6 C 1.46500 * 119.99660 * 269.99645 * 5 4 2 7 7 C 1.50701 * 109.47606 * 270.00153 * 6 5 4 8 8 H 1.08002 * 119.99635 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00194 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00082 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99797 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47370 * 90.00167 * 11 9 7 13 13 H 1.48496 * 109.46925 * 210.00394 * 11 9 7 14 14 H 1.48507 * 109.47253 * 329.99867 * 11 9 7 15 15 C 1.34770 * 119.99908 * 90.00495 * 5 4 2 16 16 O 1.21621 * 119.99838 * 180.02562 * 15 5 4 17 17 C 1.47101 * 120.00354 * 359.97438 * 15 5 4 18 18 C 1.32990 * 120.00299 * 180.02562 * 17 15 5 19 19 C 1.50701 * 120.00190 * 179.97438 * 18 17 15 20 20 N 1.46908 * 109.46808 * 125.00108 * 19 18 17 21 21 C 1.47024 * 110.99261 * 46.32548 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00088 * 20 19 18 26 26 H 1.09000 * 109.47002 * 299.99965 * 1 2 3 27 27 H 1.09005 * 109.46854 * 59.99991 * 1 2 3 28 28 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47497 * 240.00017 * 2 1 3 30 30 H 1.09000 * 109.47165 * 60.00134 * 3 2 1 31 31 H 1.09006 * 109.47253 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46991 * 299.99790 * 3 2 1 33 33 H 1.09001 * 109.47129 * 55.00340 * 4 2 1 34 34 H 1.08998 * 109.47188 * 295.00045 * 4 2 1 35 35 H 1.09005 * 109.47223 * 30.00450 * 6 5 4 36 36 H 1.09005 * 109.46895 * 150.00040 * 6 5 4 37 37 H 0.96995 * 119.99856 * 179.97438 * 10 9 7 38 38 H 1.08001 * 119.99863 * 0.02562 * 17 15 5 39 39 H 1.08001 * 119.99838 * 0.02562 * 18 17 15 40 40 H 1.09003 * 109.46797 * 5.00628 * 19 18 17 41 41 H 1.08999 * 109.47310 * 245.00189 * 19 18 17 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5613 7 6 4.3421 -3.0660 1.5961 8 1 4.0430 -2.8973 2.6200 9 6 4.9219 -4.2638 1.2356 10 7 5.2866 -4.4690 -0.0112 11 14 5.1893 -5.5953 2.5182 12 1 3.9946 -6.4754 2.5746 13 1 6.3815 -6.4019 2.1532 14 1 5.4045 -4.9671 3.8465 15 6 4.2675 0.1492 1.7157 16 8 5.4796 0.0622 1.6666 17 6 3.6392 1.3198 2.3472 18 6 4.3965 2.2827 2.8649 19 6 3.7528 3.4822 3.5114 20 7 4.2630 3.6331 4.8807 21 6 5.7265 3.4975 4.9154 22 6 6.2090 3.6027 6.3647 23 8 5.7659 4.8432 6.9214 24 6 4.3453 5.0073 6.9042 25 6 3.8440 4.9175 5.4604 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1370 35 1 3.4757 -2.3722 -0.2267 36 1 5.0851 -1.7021 0.1325 37 1 5.6948 -5.3116 -0.2647 38 1 2.5628 1.3973 2.3905 39 1 5.4728 2.2054 2.8213 40 1 2.6720 3.3434 3.5396 41 1 3.9894 4.3764 2.9349 42 1 6.1792 4.2923 4.3225 43 1 6.0128 2.5288 4.5060 44 1 7.2979 3.5607 6.3897 45 1 5.7995 2.7761 6.9455 46 1 3.8810 4.2217 7.5002 47 1 4.0863 5.9810 7.3201 48 1 2.7562 4.9848 5.4479 49 1 4.2666 5.7354 4.8769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865027051.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:13 Heat of formation + Delta-G solvation = -83.222979 kcal Electronic energy + Delta-G solvation = -26532.047309 eV Core-core repulsion = 22879.696042 eV Total energy + Delta-G solvation = -3652.351267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01291 -40.49337 -37.78729 -37.33896 -35.59260 -34.14488 -34.04946 -32.14166 -30.13200 -29.00436 -27.98748 -26.99094 -26.12603 -25.08066 -24.56003 -21.92204 -21.45488 -21.03634 -19.41910 -18.64134 -18.41441 -17.53745 -17.23407 -17.01731 -16.44687 -16.10916 -16.05017 -15.93538 -15.77239 -15.50602 -15.03072 -14.78362 -14.46380 -14.31150 -14.17966 -13.84471 -13.39133 -13.32051 -13.17057 -13.04983 -12.87154 -12.74534 -12.66532 -12.51401 -12.35128 -12.31266 -12.13281 -11.97164 -11.80232 -11.63471 -11.55753 -11.46196 -10.75097 -10.65946 -10.58989 -10.51522 -9.44206 -9.31837 -8.23826 -6.39331 0.42387 1.34784 1.37981 1.48596 2.25863 2.44063 2.45574 2.83071 2.98161 3.05068 3.55224 3.86091 3.91161 3.98276 4.02622 4.06060 4.11601 4.17499 4.29000 4.32607 4.36528 4.45887 4.53311 4.61982 4.66146 4.72901 4.73308 4.81007 4.84411 4.89989 4.93077 4.97210 5.00228 5.07453 5.09826 5.19415 5.30259 5.37455 5.40874 5.49474 5.52899 5.58097 5.84081 5.86255 5.94943 6.04655 6.16644 6.68504 6.80295 7.26377 7.47430 8.83104 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003578 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.893505 B = 7823.623156 C = 9546.709613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C -0.142 4.142 4 C 0.110 3.890 5 N -0.594 5.594 6 C 0.264 3.736 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.969 3.031 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.274 1.274 15 C 0.525 3.475 16 O -0.609 6.609 17 C -0.189 4.189 18 C -0.078 4.078 19 C 0.090 3.910 20 N -0.544 5.544 21 C 0.011 3.989 22 C 0.064 3.936 23 O -0.404 6.404 24 C 0.058 3.942 25 C 0.018 3.982 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.020 0.980 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.163 0.837 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 20.414 9.285 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.199 4.199 4 C -0.012 4.012 5 N -0.323 5.323 6 C 0.143 3.857 7 C -0.582 4.582 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.793 3.207 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.198 1.198 15 C 0.316 3.684 16 O -0.493 6.493 17 C -0.210 4.210 18 C -0.098 4.098 19 C -0.037 4.037 20 N -0.269 5.269 21 C -0.118 4.118 22 C -0.012 4.012 23 O -0.323 6.323 24 C -0.019 4.019 25 C -0.109 4.109 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.038 0.962 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.180 0.820 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.138 0.862 48 H 0.128 0.872 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.445 19.975 9.485 24.456 hybrid contribution 1.045 -0.941 -0.695 1.569 sum -9.401 19.034 8.790 22.977 Atomic orbital electron populations 1.21707 0.92001 1.02259 1.03231 1.21518 0.97737 0.96809 0.97222 1.21979 0.99511 0.95276 1.03166 1.21885 0.78257 1.01720 0.99347 1.48096 1.07638 1.20345 1.56191 1.18674 0.92028 0.82444 0.92586 1.21701 1.40888 0.99978 0.95649 0.92981 1.25876 0.94655 1.00899 0.97707 1.70057 1.42150 1.26039 1.18583 0.85398 0.78310 0.78394 0.78616 1.18615 1.20508 1.19837 1.19313 0.86323 0.84190 0.78534 1.90707 1.16715 1.80754 1.61094 1.22852 1.01870 0.93456 1.02790 1.23642 0.99785 0.94252 0.92140 1.21300 1.00768 0.94323 0.87294 1.62392 1.10632 1.34017 1.19896 1.22862 0.88539 1.01965 0.98397 1.22697 1.00474 0.86332 0.91746 1.87952 1.23429 1.38603 1.82346 1.22867 0.80253 1.03444 0.95317 1.22899 1.02797 0.89044 0.96202 0.90468 0.91465 0.92859 0.93698 0.89919 0.95468 0.91562 0.91181 0.88179 0.96161 0.98818 0.92369 0.82024 0.88016 0.87082 0.91566 0.93831 0.90323 0.87442 0.92492 0.92255 0.86228 0.87196 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.19 71.98 0.66 -1.84 16 2 C -0.11 -2.98 3.13 -10.79 -0.03 -3.02 16 3 C -0.14 -3.27 7.61 71.98 0.55 -2.73 16 4 C 0.11 3.53 4.94 86.38 0.43 3.96 16 5 N -0.59 -26.32 2.34 -830.41 -1.95 -28.27 16 6 C 0.26 14.84 5.16 85.63 0.44 15.28 16 7 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.01 0.45 5.46 84.65 0.46 0.91 16 10 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 11 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 15 C 0.52 23.06 6.40 86.57 0.55 23.61 16 16 O -0.61 -33.32 15.80 -4.10 -0.06 -33.38 16 17 C -0.19 -5.61 6.65 23.43 0.16 -5.46 16 18 C -0.08 -2.07 8.15 24.52 0.20 -1.87 16 19 C 0.09 1.60 5.73 85.56 0.49 2.09 16 20 N -0.54 -10.47 4.87 -899.72 -4.38 -14.86 16 21 C 0.01 0.23 5.10 86.31 0.44 0.67 16 22 C 0.06 1.29 7.01 72.02 0.50 1.80 16 23 O -0.40 -8.35 10.83 -148.98 -1.61 -9.97 16 24 C 0.06 0.85 7.01 72.02 0.50 1.35 16 25 C 0.02 0.25 5.63 86.31 0.49 0.74 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.40 6.51 -2.39 -0.02 1.39 16 31 H 0.03 0.80 5.86 -2.38 -0.01 0.78 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 34 H 0.10 2.53 6.09 -2.39 -0.01 2.51 16 35 H 0.02 1.16 8.07 -2.38 -0.02 1.14 16 36 H -0.01 -0.41 7.42 -2.38 -0.02 -0.43 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.16 3.54 4.29 -2.91 -0.01 3.53 16 39 H 0.10 3.25 5.99 -2.91 -0.02 3.24 16 40 H 0.11 1.49 7.82 -2.39 -0.02 1.47 16 41 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 42 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 2.00 6.02 -2.39 -0.01 1.98 16 44 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -78.63 382.59 1.30 -77.33 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.91 Total: 15.03 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.08 Total: 3.34 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -6.04 Total: -100.27 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.68 Total: -43.35 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -78.63 1.30 -77.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027051.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.888 kcal (2) G-P(sol) polarization free energy of solvation -78.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds