Wall clock time and date at job start Fri Apr 10 2020 22:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46770 * 2 1 4 4 C 1.52992 * 109.46788 * 119.99985 * 2 1 3 5 5 N 1.46509 * 109.46655 * 175.00109 * 4 2 1 6 6 C 1.46506 * 119.99982 * 269.99911 * 5 4 2 7 7 C 1.50692 * 109.47118 * 270.00153 * 6 5 4 8 8 H 1.07996 * 120.00441 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99975 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00319 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46834 * 60.00153 * 11 9 7 13 13 H 1.48500 * 109.47389 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47219 * 300.00378 * 11 9 7 15 15 C 1.34772 * 119.99858 * 90.00090 * 5 4 2 16 16 O 1.21615 * 119.99818 * 179.97438 * 15 5 4 17 17 C 1.47097 * 120.00118 * 359.97438 * 15 5 4 18 18 C 1.32995 * 119.99819 * 174.39665 * 17 15 5 19 19 C 1.50700 * 120.00358 * 351.45785 * 18 17 15 20 20 N 1.46895 * 109.47270 * 225.84518 * 19 18 17 21 21 C 1.47019 * 110.99865 * 46.31682 * 20 19 18 22 22 C 1.53103 * 109.25514 * 182.35031 * 21 20 19 23 23 O 1.43021 * 109.29422 * 303.22020 * 22 21 20 24 24 C 1.43020 * 113.73983 * 58.64432 * 23 22 21 25 25 C 1.47016 * 111.00028 * 169.99729 * 20 19 18 26 26 H 1.09000 * 109.47029 * 300.00091 * 1 2 3 27 27 H 1.08997 * 109.46956 * 59.99518 * 1 2 3 28 28 H 1.08997 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46592 * 240.00498 * 2 1 3 30 30 H 1.08997 * 109.47774 * 299.99980 * 3 2 1 31 31 H 1.09000 * 109.47419 * 60.00147 * 3 2 1 32 32 H 1.09005 * 109.47212 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47637 * 55.00913 * 4 2 1 34 34 H 1.08997 * 109.47977 * 294.99652 * 4 2 1 35 35 H 1.08998 * 109.46724 * 30.00192 * 6 5 4 36 36 H 1.08995 * 109.46792 * 149.99966 * 6 5 4 37 37 H 0.97008 * 119.99652 * 180.02562 * 10 9 7 38 38 H 1.07999 * 120.00234 * 354.39790 * 17 15 5 39 39 H 1.08003 * 120.00158 * 171.46117 * 18 17 15 40 40 H 1.08996 * 109.47215 * 105.84056 * 19 18 17 41 41 H 1.08999 * 109.46986 * 345.84370 * 19 18 17 42 42 H 1.08995 * 109.46941 * 62.44365 * 21 20 19 43 43 H 1.08995 * 109.54447 * 302.30425 * 21 20 19 44 44 H 1.09001 * 109.50671 * 183.26706 * 22 21 20 45 45 H 1.09000 * 109.50406 * 63.17228 * 22 21 20 46 46 H 1.09003 * 109.49813 * 61.26838 * 24 23 22 47 47 H 1.08991 * 109.50602 * 181.35142 * 24 23 22 48 48 H 1.09000 * 109.50491 * 57.67406 * 25 20 19 49 49 H 1.08998 * 109.54589 * 297.56779 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.3422 -3.0659 1.5958 8 1 4.0430 -2.8974 2.6198 9 6 4.9210 -4.2641 1.2351 10 7 5.2849 -4.4696 -0.0119 11 14 5.1898 -5.5953 2.5179 12 1 3.8832 -5.9898 3.1030 13 1 5.8240 -6.7768 1.8799 14 1 6.0763 -5.0771 3.5907 15 6 4.2676 0.1492 1.7155 16 8 5.4796 0.0618 1.6672 17 6 3.6392 1.3198 2.3470 18 6 4.3917 2.2270 2.9630 19 6 5.8593 1.9648 3.1834 20 7 6.2171 2.3139 4.5647 21 6 5.2390 1.7672 5.5165 22 6 5.6167 2.2029 6.9348 23 8 6.9506 1.7741 7.2214 24 6 7.9286 2.2893 6.3140 25 6 7.5750 1.8536 4.8896 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6055 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1370 35 1 3.4758 -2.3721 -0.2268 36 1 5.0851 -1.7020 0.1324 37 1 5.6918 -5.3128 -0.2657 38 1 2.5668 1.4425 2.3105 39 1 3.9511 3.1517 3.3054 40 1 6.4445 2.5712 2.4921 41 1 6.0700 0.9097 3.0091 42 1 5.2433 0.6789 5.4568 43 1 4.2448 2.1418 5.2733 44 1 4.9280 1.7523 7.6495 45 1 5.5596 3.2889 7.0092 46 1 7.9389 3.3779 6.3697 47 1 8.9120 1.9020 6.5803 48 1 8.2852 2.2914 4.1882 49 1 7.6179 0.7667 4.8202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865027053.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:16 Heat of formation + Delta-G solvation = -47.759078 kcal Electronic energy + Delta-G solvation = -27152.153623 eV Core-core repulsion = 23501.340186 eV Total energy + Delta-G solvation = -3650.813437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.84980 -39.20483 -36.70365 -35.81410 -33.86525 -32.69060 -32.27529 -31.14006 -28.58790 -27.44970 -27.00895 -25.71971 -24.43562 -24.00384 -22.95193 -20.70528 -20.32530 -20.13801 -17.85016 -17.11220 -16.46699 -16.27281 -16.07975 -15.37951 -15.17274 -15.02501 -14.72835 -14.48797 -14.45957 -14.04772 -14.01465 -13.28302 -13.12743 -13.01318 -12.55620 -12.33983 -12.31676 -12.12619 -11.98261 -11.71669 -11.61594 -11.36559 -11.30107 -11.13670 -10.95989 -10.92668 -10.72778 -10.60385 -10.56159 -10.34241 -10.10569 -9.69635 -9.64706 -9.11649 -8.93239 -8.44858 -7.96552 -7.60443 -6.05895 -4.10819 1.70151 3.30330 3.34908 3.37970 3.76430 3.87246 3.96608 4.02476 4.43609 4.83792 4.94857 5.01607 5.04119 5.05442 5.12268 5.14501 5.26347 5.28323 5.30640 5.39672 5.50120 5.56578 5.58877 5.66371 5.71057 5.79013 5.84206 5.86542 5.92413 5.93405 6.04406 6.06663 6.16295 6.18506 6.25001 6.44192 6.47227 6.55652 6.68093 7.00914 7.06069 7.11501 7.17397 7.43762 7.54842 7.90433 8.21690 8.42233 8.88045 9.08051 9.54406 11.01893 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.004843 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.678163 B = 5780.582998 C = 7924.620375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.588 5.588 6 C 0.247 3.753 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.533 3.467 16 O -0.538 6.538 17 C -0.208 4.208 18 C -0.081 4.081 19 C 0.038 3.962 20 N -0.539 5.539 21 C 0.015 3.985 22 C 0.065 3.935 23 O -0.388 6.388 24 C 0.066 3.934 25 C 0.018 3.982 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 15.312 6.918 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.205 4.205 4 C -0.009 4.009 5 N -0.317 5.317 6 C 0.128 3.872 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.323 3.677 16 O -0.419 6.419 17 C -0.229 4.229 18 C -0.101 4.101 19 C -0.087 4.087 20 N -0.265 5.265 21 C -0.113 4.113 22 C -0.012 4.012 23 O -0.306 6.306 24 C -0.011 4.011 25 C -0.111 4.111 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.132 0.868 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.114 0.886 48 H 0.103 0.897 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.641 15.458 6.929 17.564 hybrid contribution -0.135 -1.439 0.207 1.460 sum -4.776 14.020 7.136 16.440 Atomic orbital electron populations 1.21761 0.95025 1.01840 1.01384 1.21577 0.95417 0.96673 1.00055 1.22043 1.01626 0.95847 1.00952 1.21555 0.81589 1.01233 0.96479 1.48152 1.05344 1.21572 1.56641 1.19261 0.94137 0.80882 0.92967 1.21373 1.40601 0.99016 0.95495 0.92637 1.24916 0.95257 0.98362 0.95429 1.69923 1.41583 1.25267 1.16543 0.86592 0.78466 0.80965 0.81606 1.20238 1.21129 1.20221 1.18453 0.86809 0.82763 0.79650 1.90532 1.13949 1.79557 1.57868 1.23166 1.00552 0.96362 1.02867 1.23448 0.95791 0.96790 0.94112 1.22284 0.92997 1.05595 0.87845 1.62290 1.01783 1.59204 1.03203 1.22786 0.96842 0.98826 0.92867 1.22662 0.83929 0.99243 0.95349 1.87975 1.16428 1.73175 1.53046 1.22656 0.92003 0.98440 0.88029 1.22736 0.91249 0.99577 0.97491 0.92876 0.92832 0.92455 0.90559 0.93174 0.92758 0.92226 0.89991 0.91578 0.95072 0.93891 0.92667 0.85205 0.86265 0.89897 0.86795 0.93694 0.89646 0.88747 0.92574 0.92546 0.88635 0.89696 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.12 -1.59 3.13 -90.62 -0.28 -1.87 16 3 C -0.15 -1.84 7.61 37.16 0.28 -1.56 16 4 C 0.12 1.85 4.94 -4.04 -0.02 1.83 16 5 N -0.59 -12.15 2.34 -176.46 -0.41 -12.57 16 6 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 7 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.53 10.80 6.28 -12.67 -0.08 10.72 16 16 O -0.54 -12.86 12.60 5.26 0.07 -12.79 16 17 C -0.21 -3.13 7.18 -37.81 -0.27 -3.40 16 18 C -0.08 -1.12 7.73 -36.13 -0.28 -1.39 16 19 C 0.04 0.59 4.90 -4.98 -0.02 0.57 16 20 N -0.54 -7.50 4.87 -235.75 -1.15 -8.65 16 21 C 0.02 0.20 5.21 -3.71 -0.02 0.18 16 22 C 0.07 0.75 7.01 37.21 0.26 1.01 16 23 O -0.39 -5.26 10.83 -35.23 -0.38 -5.64 16 24 C 0.07 0.76 7.01 37.21 0.26 1.02 16 25 C 0.02 0.24 5.63 -3.71 -0.02 0.22 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.58 6.40 -51.93 -0.33 0.25 16 32 H 0.06 0.89 5.85 -51.93 -0.30 0.58 16 33 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.13 1.61 4.21 -52.49 -0.22 1.39 16 39 H 0.12 1.31 8.00 -52.48 -0.42 0.89 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.12 2.27 4.59 -54.19 -0.25 2.02 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.00 6.63 -51.93 -0.34 0.66 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -32.11 377.99 -9.22 -41.33 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.46 Total: 2.43 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.30 Total: -0.98 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.83 Total: -46.95 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.32 Total: -18.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.11 -9.22 -41.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027053.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.434 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds