Wall clock time and date at job start Fri Apr 10 2020 22:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46770 * 2 1 4 4 C 1.52992 * 109.46788 * 119.99985 * 2 1 3 5 5 N 1.46509 * 109.46655 * 175.00109 * 4 2 1 6 6 C 1.46506 * 119.99982 * 269.99911 * 5 4 2 7 7 C 1.50692 * 109.47118 * 270.00153 * 6 5 4 8 8 H 1.07996 * 120.00441 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99975 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00319 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46834 * 60.00153 * 11 9 7 13 13 H 1.48500 * 109.47389 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47219 * 300.00378 * 11 9 7 15 15 C 1.34772 * 119.99858 * 90.00090 * 5 4 2 16 16 O 1.21615 * 119.99818 * 179.97438 * 15 5 4 17 17 C 1.47097 * 120.00118 * 359.97438 * 15 5 4 18 18 C 1.32995 * 119.99819 * 174.39665 * 17 15 5 19 19 C 1.50700 * 120.00358 * 351.45785 * 18 17 15 20 20 N 1.46895 * 109.47270 * 225.84518 * 19 18 17 21 21 C 1.47019 * 110.99865 * 46.31682 * 20 19 18 22 22 C 1.53103 * 109.25514 * 182.35031 * 21 20 19 23 23 O 1.43021 * 109.29422 * 303.22020 * 22 21 20 24 24 C 1.43020 * 113.73983 * 58.64432 * 23 22 21 25 25 C 1.47016 * 111.00028 * 169.99729 * 20 19 18 26 26 H 1.09000 * 109.47029 * 300.00091 * 1 2 3 27 27 H 1.08997 * 109.46956 * 59.99518 * 1 2 3 28 28 H 1.08997 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46592 * 240.00498 * 2 1 3 30 30 H 1.08997 * 109.47774 * 299.99980 * 3 2 1 31 31 H 1.09000 * 109.47419 * 60.00147 * 3 2 1 32 32 H 1.09005 * 109.47212 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47637 * 55.00913 * 4 2 1 34 34 H 1.08997 * 109.47977 * 294.99652 * 4 2 1 35 35 H 1.08998 * 109.46724 * 30.00192 * 6 5 4 36 36 H 1.08995 * 109.46792 * 149.99966 * 6 5 4 37 37 H 0.97008 * 119.99652 * 180.02562 * 10 9 7 38 38 H 1.07999 * 120.00234 * 354.39790 * 17 15 5 39 39 H 1.08003 * 120.00158 * 171.46117 * 18 17 15 40 40 H 1.08996 * 109.47215 * 105.84056 * 19 18 17 41 41 H 1.08999 * 109.46986 * 345.84370 * 19 18 17 42 42 H 1.08995 * 109.46941 * 62.44365 * 21 20 19 43 43 H 1.08995 * 109.54447 * 302.30425 * 21 20 19 44 44 H 1.09001 * 109.50671 * 183.26706 * 22 21 20 45 45 H 1.09000 * 109.50406 * 63.17228 * 22 21 20 46 46 H 1.09003 * 109.49813 * 61.26838 * 24 23 22 47 47 H 1.08991 * 109.50602 * 181.35142 * 24 23 22 48 48 H 1.09000 * 109.50491 * 57.67406 * 25 20 19 49 49 H 1.08998 * 109.54589 * 297.56779 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.3422 -3.0659 1.5958 8 1 4.0430 -2.8974 2.6198 9 6 4.9210 -4.2641 1.2351 10 7 5.2849 -4.4696 -0.0119 11 14 5.1898 -5.5953 2.5179 12 1 3.8832 -5.9898 3.1030 13 1 5.8240 -6.7768 1.8799 14 1 6.0763 -5.0771 3.5907 15 6 4.2676 0.1492 1.7155 16 8 5.4796 0.0618 1.6672 17 6 3.6392 1.3198 2.3470 18 6 4.3917 2.2270 2.9630 19 6 5.8593 1.9648 3.1834 20 7 6.2171 2.3139 4.5647 21 6 5.2390 1.7672 5.5165 22 6 5.6167 2.2029 6.9348 23 8 6.9506 1.7741 7.2214 24 6 7.9286 2.2893 6.3140 25 6 7.5750 1.8536 4.8896 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6055 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1370 35 1 3.4758 -2.3721 -0.2268 36 1 5.0851 -1.7020 0.1324 37 1 5.6918 -5.3128 -0.2657 38 1 2.5668 1.4425 2.3105 39 1 3.9511 3.1517 3.3054 40 1 6.4445 2.5712 2.4921 41 1 6.0700 0.9097 3.0091 42 1 5.2433 0.6789 5.4568 43 1 4.2448 2.1418 5.2733 44 1 4.9280 1.7523 7.6495 45 1 5.5596 3.2889 7.0092 46 1 7.9389 3.3779 6.3697 47 1 8.9120 1.9020 6.5803 48 1 8.2852 2.2914 4.1882 49 1 7.6179 0.7667 4.8202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865027053.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:15 Heat of formation + Delta-G solvation = -69.977716 kcal Electronic energy + Delta-G solvation = -27153.117095 eV Core-core repulsion = 23501.340186 eV Total energy + Delta-G solvation = -3651.776909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24211 -40.38360 -38.02036 -37.02176 -35.59623 -34.15834 -33.93628 -32.13141 -30.10184 -29.05414 -27.98033 -27.00052 -25.97099 -25.01809 -24.58463 -22.15616 -21.41781 -21.29513 -19.33490 -18.62570 -18.37328 -17.41966 -17.17124 -16.96643 -16.52721 -16.25592 -16.00897 -15.77715 -15.59901 -15.54448 -15.24353 -14.50927 -14.40642 -14.30067 -14.24544 -13.79353 -13.47591 -13.41970 -13.27214 -13.07437 -12.92356 -12.72584 -12.66355 -12.54483 -12.39391 -12.32477 -12.16335 -12.09465 -11.79754 -11.66264 -11.58359 -11.39315 -10.72465 -10.68402 -10.39540 -10.34434 -9.41208 -9.18634 -8.25736 -6.41162 0.45210 1.31423 1.35417 1.42851 2.25502 2.43407 2.46472 2.79177 2.97061 3.02927 3.71549 3.81219 3.91320 3.97757 4.04429 4.05486 4.17954 4.21607 4.28126 4.33215 4.48898 4.51467 4.53316 4.67199 4.69188 4.71900 4.80562 4.83916 4.86282 4.88953 4.92996 4.99524 5.04452 5.08283 5.09113 5.18063 5.26547 5.29816 5.44649 5.50805 5.51759 5.58039 5.85263 5.90987 5.97014 6.03294 6.16647 6.66539 6.82638 7.25186 7.50356 8.80493 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.004843 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.678163 B = 5780.582998 C = 7924.620375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.266 3.734 7 C -0.542 4.542 8 H 0.049 0.951 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.259 1.259 13 H -0.276 1.276 14 H -0.281 1.281 15 C 0.521 3.479 16 O -0.588 6.588 17 C -0.211 4.211 18 C -0.057 4.057 19 C 0.037 3.963 20 N -0.527 5.527 21 C 0.013 3.987 22 C 0.066 3.934 23 O -0.410 6.410 24 C 0.070 3.930 25 C 0.014 3.986 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.018 0.982 36 H -0.005 1.005 37 H 0.267 0.733 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.008 0.992 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 17.645 9.145 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.199 4.199 4 C -0.011 4.011 5 N -0.324 5.324 6 C 0.144 3.856 7 C -0.580 4.580 8 H 0.068 0.932 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.788 3.212 12 H -0.184 1.184 13 H -0.201 1.201 14 H -0.207 1.207 15 C 0.314 3.686 16 O -0.473 6.473 17 C -0.232 4.232 18 C -0.077 4.077 19 C -0.089 4.089 20 N -0.252 5.252 21 C -0.115 4.115 22 C -0.011 4.011 23 O -0.329 6.329 24 C -0.007 4.007 25 C -0.115 4.115 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.036 0.964 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.027 0.973 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.128 0.872 48 H 0.112 0.888 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.908 17.810 9.161 21.186 hybrid contribution 0.632 -2.130 -0.515 2.280 sum -6.277 15.680 8.646 18.974 Atomic orbital electron populations 1.21712 0.92133 1.02198 1.03215 1.21513 0.97643 0.96876 0.97237 1.22005 0.99663 0.95152 1.03125 1.21851 0.78483 1.01529 0.99268 1.48129 1.07509 1.20338 1.56445 1.18633 0.92037 0.82453 0.92462 1.21635 1.40862 1.00001 0.95517 0.93249 1.25818 0.94752 1.00779 0.97554 1.70045 1.42122 1.26037 1.18443 0.85538 0.78965 0.78063 0.78680 1.18362 1.20051 1.20667 1.19418 0.86366 0.83783 0.79043 1.90549 1.16313 1.80787 1.59638 1.23056 1.02113 0.94309 1.03745 1.23739 0.94171 0.97638 0.92102 1.22077 0.94948 1.02704 0.89148 1.62397 1.02140 1.58362 1.02330 1.22907 0.97815 0.96694 0.94059 1.22822 0.83382 1.00597 0.94300 1.87950 1.17519 1.73896 1.53513 1.22749 0.92323 0.99539 0.86086 1.22831 0.91579 0.97516 0.99532 0.90502 0.91489 0.92929 0.93750 0.91679 0.89869 0.95213 0.91437 0.88256 0.96403 0.98676 0.92374 0.81593 0.81533 0.90020 0.91415 0.97325 0.87407 0.87005 0.90458 0.90558 0.87158 0.88779 0.96941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.19 71.98 0.66 -1.86 16 2 C -0.11 -2.96 3.13 -10.79 -0.03 -2.99 16 3 C -0.14 -3.24 7.61 71.98 0.55 -2.70 16 4 C 0.11 3.52 4.94 86.38 0.43 3.94 16 5 N -0.60 -25.76 2.34 -830.45 -1.95 -27.71 16 6 C 0.27 14.73 5.16 85.63 0.44 15.17 16 7 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 11 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 15 C 0.52 21.91 6.28 86.57 0.54 22.45 16 16 O -0.59 -30.29 12.60 -4.08 -0.05 -30.34 16 17 C -0.21 -5.97 7.18 23.43 0.17 -5.80 16 18 C -0.06 -1.41 7.73 24.52 0.19 -1.22 16 19 C 0.04 1.17 4.90 85.56 0.42 1.59 16 20 N -0.53 -14.17 4.87 -899.79 -4.38 -18.55 16 21 C 0.01 0.33 5.21 86.31 0.45 0.78 16 22 C 0.07 1.35 7.01 72.02 0.50 1.85 16 23 O -0.41 -10.49 10.83 -148.98 -1.61 -12.10 16 24 C 0.07 1.51 7.01 72.01 0.50 2.02 16 25 C 0.01 0.38 5.63 86.31 0.49 0.86 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.40 6.40 -2.39 -0.02 1.38 16 32 H 0.03 0.86 5.85 -2.38 -0.01 0.84 16 33 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 34 H 0.10 2.46 6.17 -2.39 -0.01 2.44 16 35 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 36 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 37 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 38 H 0.17 3.41 4.21 -2.91 -0.01 3.40 16 39 H 0.17 2.72 8.00 -2.91 -0.02 2.70 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.07 2.89 4.59 -38.20 -0.18 2.72 16 42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.11 2.15 6.63 -2.39 -0.02 2.14 16 44 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -76.86 377.99 1.08 -75.78 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.75 Total: 18.36 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 6.01 Total: 3.38 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -6.04 Total: -103.09 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.66 Total: -42.45 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.86 1.08 -75.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027053.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.804 kcal (2) G-P(sol) polarization free energy of solvation -76.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds