Wall clock time and date at job start Fri Apr 10 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47585 * 2 1 4 4 C 1.53005 * 109.46930 * 120.00388 * 2 1 3 5 5 N 1.46504 * 109.46985 * 173.45465 * 4 2 1 6 6 C 1.46498 * 119.99553 * 276.62606 * 5 4 2 7 7 C 1.50697 * 109.47417 * 270.00016 * 6 5 4 8 8 H 1.07998 * 119.99887 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00107 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00279 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00247 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47040 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47383 * 119.99893 * 11 9 7 14 14 H 1.48498 * 109.47418 * 240.00334 * 11 9 7 15 15 C 1.34770 * 119.99911 * 96.62845 * 5 4 2 16 16 O 1.21287 * 119.99796 * 187.80150 * 15 5 4 17 17 C 1.50697 * 120.00219 * 7.81040 * 15 5 4 18 18 H 1.09003 * 109.79069 * 283.64097 * 17 15 5 19 19 C 1.53062 * 109.63553 * 163.14806 * 17 15 5 20 20 C 1.51795 * 110.74401 * 325.21470 * 19 17 15 21 21 C 1.51771 * 113.81504 * 293.18529 * 20 19 17 22 22 C 1.52997 * 110.87867 * 66.99408 * 21 20 19 23 23 N 1.47191 * 108.66652 * 273.54490 * 22 21 20 24 24 C 1.46495 * 119.78052 * 251.69443 * 23 22 21 25 25 C 1.33370 * 120.43660 * 71.96796 * 23 22 21 26 26 O 1.21276 * 119.89683 * 179.69365 * 25 23 22 27 27 H 1.09006 * 109.46904 * 300.00278 * 1 2 3 28 28 H 1.08997 * 109.46910 * 59.99715 * 1 2 3 29 29 H 1.08993 * 109.47837 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46904 * 239.99722 * 2 1 3 31 31 H 1.09005 * 109.47551 * 184.83910 * 3 2 1 32 32 H 1.09005 * 109.47099 * 304.83673 * 3 2 1 33 33 H 1.08997 * 109.47315 * 64.83978 * 3 2 1 34 34 H 1.08996 * 109.47240 * 53.44885 * 4 2 1 35 35 H 1.08998 * 109.46744 * 293.45397 * 4 2 1 36 36 H 1.09002 * 109.47457 * 30.00593 * 6 5 4 37 37 H 1.09004 * 109.47012 * 150.00167 * 6 5 4 38 38 H 0.97002 * 120.00640 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.21964 * 204.89378 * 19 17 15 40 40 H 1.08993 * 109.22626 * 85.54427 * 19 17 15 41 41 H 1.09002 * 108.61457 * 172.06442 * 20 19 17 42 42 H 1.09003 * 108.50135 * 54.23056 * 20 19 17 43 43 H 1.08999 * 109.19720 * 306.63987 * 21 20 19 44 44 H 1.09000 * 109.16238 * 187.33020 * 21 20 19 45 45 H 1.08997 * 109.60504 * 153.78154 * 22 21 20 46 46 H 1.09005 * 109.59937 * 33.29645 * 22 21 20 47 47 H 1.08994 * 109.47423 * 90.00014 * 24 23 22 48 48 H 1.08997 * 109.47032 * 210.00176 * 24 23 22 49 49 H 1.09009 * 109.47285 * 329.99812 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.4965 -0.8592 1.1731 6 6 4.0889 -1.9680 0.4209 7 6 4.2773 -3.1512 1.3350 8 1 3.9846 -3.0841 2.3724 9 6 4.8233 -4.3194 0.8470 10 7 5.1802 -4.4010 -0.4162 11 14 5.0562 -5.7863 1.9798 12 1 4.5779 -5.4402 3.3425 13 1 4.2791 -6.9405 1.4613 14 1 6.4963 -6.1444 2.0364 15 6 4.2913 0.0340 1.7951 16 8 5.4908 0.0052 1.6176 17 6 3.6898 1.0683 2.7112 18 1 3.2229 1.8570 2.1212 19 6 4.7836 1.6685 3.5978 20 6 5.8223 0.6204 3.9541 21 6 5.2941 -0.4869 4.8475 22 6 4.2623 -1.3399 4.1066 23 7 2.9395 -0.7111 4.2522 24 6 1.9292 -1.3324 5.1121 25 6 2.6526 0.4175 3.6021 26 8 1.5576 0.9242 3.7248 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1267 1.4436 -0.0867 32 1 1.6077 1.9807 -0.8435 33 1 1.7493 1.9306 0.9301 34 1 1.5841 -1.7096 1.3097 35 1 1.7754 -0.1444 2.1353 36 1 3.4273 -2.2448 -0.3999 37 1 5.0551 -1.6605 0.0209 38 1 5.5647 -5.2227 -0.7595 39 1 4.3330 2.0528 4.5130 40 1 5.2678 2.4873 3.0658 41 1 6.6521 1.1116 4.4623 42 1 6.1951 0.1753 3.0315 43 1 4.8279 -0.0452 5.7282 44 1 6.1240 -1.1203 5.1609 45 1 4.2404 -2.3417 4.5353 46 1 4.5259 -1.3971 3.0505 47 1 2.0251 -0.9427 6.1255 48 1 0.9350 -1.1045 4.7278 49 1 2.0757 -2.4126 5.1229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874232874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:19 Heat of formation + Delta-G solvation = -42.997033 kcal Electronic energy + Delta-G solvation = -29758.439359 eV Core-core repulsion = 26107.832420 eV Total energy + Delta-G solvation = -3650.606939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52747 -38.60773 -37.03079 -35.74124 -34.45661 -33.52799 -32.44579 -31.17522 -28.44985 -27.49682 -27.00094 -25.93720 -25.15341 -23.79981 -22.84736 -20.59122 -20.30912 -19.34767 -18.41544 -17.42843 -16.55577 -16.46031 -15.77236 -15.37623 -15.14164 -14.89438 -14.49147 -14.13498 -13.88774 -13.67954 -13.46907 -13.25997 -13.05350 -12.94829 -12.53133 -12.36288 -12.27732 -12.09866 -11.93021 -11.70134 -11.59310 -11.39525 -11.31633 -11.03766 -10.90568 -10.75696 -10.63810 -10.58233 -10.48298 -10.27922 -10.22118 -9.97560 -9.68696 -9.48424 -8.59584 -8.52242 -8.38363 -7.65727 -6.13512 -4.19273 2.73666 3.05031 3.21431 3.24517 3.30033 3.30638 3.77074 4.34218 4.56409 4.82968 4.98586 5.11210 5.16146 5.19031 5.21820 5.28548 5.36184 5.45360 5.47379 5.55879 5.64214 5.73791 5.78427 5.84368 5.89764 5.90610 5.96071 5.97905 6.06614 6.13637 6.17287 6.23032 6.32963 6.35144 6.38535 6.50275 6.52638 6.62117 6.68529 6.96469 7.00683 7.38111 7.49336 7.55465 7.82494 8.12114 8.23924 8.31246 8.76106 8.92827 9.46186 10.94298 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.007383 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.145202 B = 3791.638594 C = 4666.465503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.150 4.150 4 C 0.086 3.914 5 N -0.590 5.590 6 C 0.242 3.758 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.065 3.935 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.519 3.481 16 O -0.524 6.524 17 C -0.142 4.142 18 H 0.126 0.874 19 C -0.086 4.086 20 C -0.184 4.184 21 C -0.129 4.129 22 C 0.076 3.924 23 N -0.598 5.598 24 C 0.083 3.917 25 C 0.538 3.462 26 O -0.557 6.557 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.033 0.967 37 H 0.047 0.953 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.145 0.855 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.127 0.873 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 8.560 7.116 12.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.207 4.207 4 C -0.038 4.038 5 N -0.319 5.319 6 C 0.123 3.877 7 C -0.572 4.572 8 H 0.083 0.917 9 C -0.138 4.138 10 N -0.527 5.527 11 Si 0.721 3.279 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.308 3.692 16 O -0.404 6.404 17 C -0.166 4.166 18 H 0.144 0.856 19 C -0.124 4.124 20 C -0.220 4.220 21 C -0.168 4.168 22 C -0.046 4.046 23 N -0.329 5.329 24 C -0.060 4.060 25 C 0.327 3.673 26 O -0.438 6.438 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.161 0.839 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.144 0.856 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.031 8.616 6.944 12.156 hybrid contribution 0.058 -1.033 0.665 1.230 sum -4.973 7.583 7.609 11.837 Atomic orbital electron populations 1.21746 0.94957 1.01705 1.01570 1.21471 0.95616 0.96441 0.99548 1.21952 1.01099 0.96176 1.01499 1.22185 0.81288 1.01700 0.98580 1.48325 1.05513 1.27300 1.50802 1.19350 0.94883 0.82123 0.91294 1.21524 1.41869 0.96976 0.96839 0.91741 1.24910 0.95205 0.98588 0.95068 1.69937 1.41948 1.27464 1.13398 0.86532 0.77989 0.82617 0.80802 1.19799 1.20991 1.20832 1.19637 0.86975 0.81491 0.81132 1.90293 1.14278 1.73411 1.62427 1.22143 0.97744 0.99519 0.97187 0.85623 1.20990 0.94880 0.98668 0.97882 1.22242 0.97988 0.96543 1.05269 1.21688 0.98737 0.97999 0.98349 1.22751 0.80311 0.96006 1.05540 1.47713 1.15347 1.24141 1.45726 1.21687 0.92678 0.97929 0.93686 1.19688 0.87755 0.80545 0.79342 1.90704 1.23461 1.63792 1.65888 0.92542 0.92836 0.92659 0.90642 0.92759 0.92837 0.92431 0.90465 0.88946 0.94908 0.93489 0.92705 0.92112 0.90562 0.92744 0.83884 0.92731 0.90904 0.89817 0.85600 0.92977 0.90516 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 2 C -0.11 -1.72 3.10 -90.62 -0.28 -2.00 16 3 C -0.15 -2.15 7.64 37.15 0.28 -1.87 16 4 C 0.09 1.52 4.50 -4.04 -0.02 1.50 16 5 N -0.59 -11.79 1.83 -175.06 -0.32 -12.11 16 6 C 0.24 5.88 5.23 -5.20 -0.03 5.85 16 7 C -0.53 -13.64 8.56 -34.44 -0.29 -13.94 16 8 H 0.06 1.59 5.70 -52.49 -0.30 1.29 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 11 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.52 10.01 2.71 -10.99 -0.03 9.98 16 16 O -0.52 -11.40 12.08 5.55 0.07 -11.34 16 17 C -0.14 -2.32 2.30 -92.54 -0.21 -2.54 16 18 H 0.13 1.93 5.53 -51.93 -0.29 1.64 16 19 C -0.09 -1.26 5.29 -27.31 -0.14 -1.41 16 20 C -0.18 -2.85 5.16 -27.97 -0.14 -2.99 16 21 C -0.13 -1.92 5.74 -27.36 -0.16 -2.08 16 22 C 0.08 1.28 4.78 -3.67 -0.02 1.26 16 23 N -0.60 -9.60 2.83 -181.36 -0.51 -10.11 16 24 C 0.08 1.11 10.42 59.84 0.62 1.74 16 25 C 0.54 9.09 3.37 -11.25 -0.04 9.05 16 26 O -0.56 -10.21 15.49 5.56 0.09 -10.13 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 31 H 0.05 0.85 6.90 -51.93 -0.36 0.49 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.81 6.83 -51.93 -0.35 0.46 16 34 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 35 H 0.09 1.62 2.89 -52.37 -0.15 1.46 16 36 H 0.03 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.05 1.28 7.33 -51.93 -0.38 0.90 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 2.69 4.06 -56.81 -0.23 2.46 16 43 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.37 7.71 -51.93 -0.40 0.97 16 46 H 0.13 2.53 1.97 -51.93 -0.10 2.42 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.08 1.05 7.37 -51.93 -0.38 0.67 16 49 H 0.07 0.89 7.85 -51.92 -0.41 0.48 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -28.84 357.37 -7.74 -36.58 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.95 Total: 7.92 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.21 Total: 2.67 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.10 Total: -46.47 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.15 Total: -21.46 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.84 -7.74 -36.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.417 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds