Wall clock time and date at job start Fri Apr 10 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47585 * 2 1 4 4 C 1.53005 * 109.46930 * 120.00388 * 2 1 3 5 5 N 1.46504 * 109.46985 * 173.45465 * 4 2 1 6 6 C 1.46498 * 119.99553 * 276.62606 * 5 4 2 7 7 C 1.50697 * 109.47417 * 270.00016 * 6 5 4 8 8 H 1.07998 * 119.99887 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00107 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00279 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00247 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47040 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47383 * 119.99893 * 11 9 7 14 14 H 1.48498 * 109.47418 * 240.00334 * 11 9 7 15 15 C 1.34770 * 119.99911 * 96.62845 * 5 4 2 16 16 O 1.21287 * 119.99796 * 187.80150 * 15 5 4 17 17 C 1.50697 * 120.00219 * 7.81040 * 15 5 4 18 18 H 1.09003 * 109.79069 * 283.64097 * 17 15 5 19 19 C 1.53062 * 109.63553 * 163.14806 * 17 15 5 20 20 C 1.51795 * 110.74401 * 325.21470 * 19 17 15 21 21 C 1.51771 * 113.81504 * 293.18529 * 20 19 17 22 22 C 1.52997 * 110.87867 * 66.99408 * 21 20 19 23 23 N 1.47191 * 108.66652 * 273.54490 * 22 21 20 24 24 C 1.46495 * 119.78052 * 251.69443 * 23 22 21 25 25 C 1.33370 * 120.43660 * 71.96796 * 23 22 21 26 26 O 1.21276 * 119.89683 * 179.69365 * 25 23 22 27 27 H 1.09006 * 109.46904 * 300.00278 * 1 2 3 28 28 H 1.08997 * 109.46910 * 59.99715 * 1 2 3 29 29 H 1.08993 * 109.47837 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46904 * 239.99722 * 2 1 3 31 31 H 1.09005 * 109.47551 * 184.83910 * 3 2 1 32 32 H 1.09005 * 109.47099 * 304.83673 * 3 2 1 33 33 H 1.08997 * 109.47315 * 64.83978 * 3 2 1 34 34 H 1.08996 * 109.47240 * 53.44885 * 4 2 1 35 35 H 1.08998 * 109.46744 * 293.45397 * 4 2 1 36 36 H 1.09002 * 109.47457 * 30.00593 * 6 5 4 37 37 H 1.09004 * 109.47012 * 150.00167 * 6 5 4 38 38 H 0.97002 * 120.00640 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.21964 * 204.89378 * 19 17 15 40 40 H 1.08993 * 109.22626 * 85.54427 * 19 17 15 41 41 H 1.09002 * 108.61457 * 172.06442 * 20 19 17 42 42 H 1.09003 * 108.50135 * 54.23056 * 20 19 17 43 43 H 1.08999 * 109.19720 * 306.63987 * 21 20 19 44 44 H 1.09000 * 109.16238 * 187.33020 * 21 20 19 45 45 H 1.08997 * 109.60504 * 153.78154 * 22 21 20 46 46 H 1.09005 * 109.59937 * 33.29645 * 22 21 20 47 47 H 1.08994 * 109.47423 * 90.00014 * 24 23 22 48 48 H 1.08997 * 109.47032 * 210.00176 * 24 23 22 49 49 H 1.09009 * 109.47285 * 329.99812 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.4965 -0.8592 1.1731 6 6 4.0889 -1.9680 0.4209 7 6 4.2773 -3.1512 1.3350 8 1 3.9846 -3.0841 2.3724 9 6 4.8233 -4.3194 0.8470 10 7 5.1802 -4.4010 -0.4162 11 14 5.0562 -5.7863 1.9798 12 1 4.5779 -5.4402 3.3425 13 1 4.2791 -6.9405 1.4613 14 1 6.4963 -6.1444 2.0364 15 6 4.2913 0.0340 1.7951 16 8 5.4908 0.0052 1.6176 17 6 3.6898 1.0683 2.7112 18 1 3.2229 1.8570 2.1212 19 6 4.7836 1.6685 3.5978 20 6 5.8223 0.6204 3.9541 21 6 5.2941 -0.4869 4.8475 22 6 4.2623 -1.3399 4.1066 23 7 2.9395 -0.7111 4.2522 24 6 1.9292 -1.3324 5.1121 25 6 2.6526 0.4175 3.6021 26 8 1.5576 0.9242 3.7248 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1267 1.4436 -0.0867 32 1 1.6077 1.9807 -0.8435 33 1 1.7493 1.9306 0.9301 34 1 1.5841 -1.7096 1.3097 35 1 1.7754 -0.1444 2.1353 36 1 3.4273 -2.2448 -0.3999 37 1 5.0551 -1.6605 0.0209 38 1 5.5647 -5.2227 -0.7595 39 1 4.3330 2.0528 4.5130 40 1 5.2678 2.4873 3.0658 41 1 6.6521 1.1116 4.4623 42 1 6.1951 0.1753 3.0315 43 1 4.8279 -0.0452 5.7282 44 1 6.1240 -1.1203 5.1609 45 1 4.2404 -2.3417 4.5353 46 1 4.5259 -1.3971 3.0505 47 1 2.0251 -0.9427 6.1255 48 1 0.9350 -1.1045 4.7278 49 1 2.0757 -2.4126 5.1229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874232874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:18 Heat of formation + Delta-G solvation = -59.067458 kcal Electronic energy + Delta-G solvation = -29759.136224 eV Core-core repulsion = 26107.832420 eV Total energy + Delta-G solvation = -3651.303805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.92237 -40.06822 -38.41100 -37.11490 -35.86100 -35.09644 -34.18761 -32.53338 -29.86460 -29.13429 -28.16769 -27.24111 -26.60251 -25.22028 -24.48847 -21.98874 -21.62171 -20.67886 -19.88588 -18.85330 -18.39570 -17.83792 -17.30048 -16.91092 -16.48477 -16.40541 -16.00009 -15.62334 -15.13467 -14.99197 -14.72810 -14.61803 -14.48378 -14.24353 -14.05835 -13.81667 -13.56476 -13.37762 -13.27675 -13.11309 -12.88092 -12.86720 -12.81296 -12.60066 -12.43898 -12.31756 -12.06604 -11.98556 -11.82410 -11.69048 -11.55273 -11.48383 -11.35745 -10.86437 -10.60364 -10.05278 -9.69852 -9.31669 -8.17051 -6.30434 1.37011 1.39748 1.41685 1.51401 1.61428 1.96554 2.20281 2.43438 3.13635 3.26930 3.43740 3.74113 3.84147 3.90056 3.96804 4.02837 4.15034 4.19952 4.31359 4.41765 4.44779 4.54317 4.61433 4.65028 4.70696 4.75626 4.81303 4.84130 4.87521 4.95363 4.97730 4.99034 5.04021 5.13326 5.19335 5.20512 5.25250 5.26552 5.34143 5.41008 5.45113 5.53771 5.75477 5.95532 6.10311 6.23704 6.65055 6.79265 6.96777 7.28311 7.43337 8.90396 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.007383 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.145202 B = 3791.638594 C = 4666.465503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.089 3.911 5 N -0.592 5.592 6 C 0.262 3.738 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.011 3.989 10 N -0.928 5.928 11 Si 0.957 3.043 12 H -0.256 1.256 13 H -0.281 1.281 14 H -0.284 1.284 15 C 0.521 3.479 16 O -0.552 6.552 17 C -0.136 4.136 18 H 0.137 0.863 19 C -0.085 4.085 20 C -0.183 4.183 21 C -0.124 4.124 22 C 0.072 3.928 23 N -0.598 5.598 24 C 0.078 3.922 25 C 0.537 3.463 26 O -0.570 6.570 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.013 0.987 37 H 0.007 0.993 38 H 0.264 0.736 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 9.301 9.425 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.201 4.201 4 C -0.034 4.034 5 N -0.322 5.322 6 C 0.141 3.859 7 C -0.573 4.573 8 H 0.092 0.908 9 C -0.188 4.188 10 N -0.568 5.568 11 Si 0.782 3.218 12 H -0.179 1.179 13 H -0.207 1.207 14 H -0.210 1.210 15 C 0.311 3.689 16 O -0.434 6.434 17 C -0.160 4.160 18 H 0.155 0.845 19 C -0.123 4.123 20 C -0.219 4.219 21 C -0.162 4.162 22 C -0.050 4.050 23 N -0.328 5.328 24 C -0.063 4.063 25 C 0.326 3.674 26 O -0.453 6.453 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.084 9.370 9.281 14.524 hybrid contribution 0.398 -1.243 -0.076 1.308 sum -5.687 8.127 9.205 13.532 Atomic orbital electron populations 1.21693 0.92710 1.02109 1.02728 1.21475 0.97457 0.96760 0.97469 1.21894 0.99919 0.95483 1.02774 1.22279 0.79661 1.01332 1.00117 1.48195 1.06597 1.26689 1.50694 1.18783 0.92652 0.83345 0.91112 1.21824 1.40992 0.97174 0.97282 0.90821 1.25774 0.95045 1.01553 0.96405 1.70072 1.43187 1.28255 1.15319 0.85517 0.77643 0.79004 0.79630 1.17942 1.20715 1.21013 1.20081 0.86476 0.81457 0.80861 1.90330 1.15636 1.74218 1.63224 1.22168 0.98324 0.98620 0.96878 0.84516 1.21060 0.94224 0.98672 0.98356 1.22132 0.98909 0.96935 1.03969 1.21650 0.98483 0.97670 0.98421 1.22663 0.81378 0.97016 1.03934 1.47786 1.15551 1.23729 1.45703 1.21871 0.91665 0.98591 0.94205 1.19682 0.87499 0.80804 0.79432 1.90699 1.23822 1.64274 1.66536 0.92100 0.90882 0.92704 0.92606 0.94625 0.90654 0.91806 0.91917 0.88096 0.96922 0.97508 0.92738 0.90295 0.89250 0.90738 0.87192 0.90900 0.90036 0.89304 0.88786 0.90829 0.90934 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.19 71.98 0.66 -2.68 16 2 C -0.11 -3.45 3.10 -10.80 -0.03 -3.48 16 3 C -0.14 -3.98 7.64 71.98 0.55 -3.43 16 4 C 0.09 3.16 4.50 86.38 0.39 3.54 16 5 N -0.59 -24.37 1.83 -826.16 -1.51 -25.88 16 6 C 0.26 13.36 5.23 85.63 0.45 13.81 16 7 C -0.53 -27.97 8.56 25.60 0.22 -27.75 16 8 H 0.07 3.65 5.70 -2.91 -0.02 3.63 16 9 C 0.01 0.61 5.46 84.65 0.46 1.07 16 10 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 11 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 12 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.52 20.36 2.71 87.66 0.24 20.59 16 16 O -0.55 -24.86 12.08 -3.05 -0.04 -24.90 16 17 C -0.14 -4.29 2.30 -12.04 -0.03 -4.32 16 18 H 0.14 4.00 5.53 -2.39 -0.01 3.98 16 19 C -0.09 -2.31 5.29 30.22 0.16 -2.15 16 20 C -0.18 -5.36 5.16 29.79 0.15 -5.21 16 21 C -0.12 -3.41 5.74 30.19 0.17 -3.24 16 22 C 0.07 2.35 4.78 86.25 0.41 2.76 16 23 N -0.60 -18.00 2.83 -846.89 -2.40 -20.39 16 24 C 0.08 1.91 10.42 127.77 1.33 3.24 16 25 C 0.54 17.17 3.37 88.11 0.30 17.47 16 26 O -0.57 -19.66 15.49 -3.02 -0.05 -19.71 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.93 8.01 -2.38 -0.02 1.91 16 31 H 0.03 1.10 6.90 -2.38 -0.02 1.09 16 32 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.06 1.68 6.83 -2.39 -0.02 1.67 16 34 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 35 H 0.10 3.45 2.89 -2.80 -0.01 3.44 16 36 H 0.01 0.69 7.94 -2.39 -0.02 0.67 16 37 H 0.01 0.40 7.33 -2.39 -0.02 0.38 16 38 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.08 1.89 7.86 -2.38 -0.02 1.87 16 40 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.11 4.15 4.06 -79.69 -0.32 3.83 16 43 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.09 2.74 7.71 -2.39 -0.02 2.72 16 46 H 0.09 3.76 1.97 -2.38 0.00 3.76 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 1.84 7.37 -2.39 -0.02 1.82 16 49 H 0.08 1.82 7.85 -2.38 -0.02 1.80 16 Total: -1.00 -63.60 357.37 4.38 -59.22 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.63 Total: 31.06 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.43 Total: 10.22 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -3.62 Total: -99.89 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.08 Total: -44.60 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -63.60 4.38 -59.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.155 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds