Wall clock time and date at job start Fri Apr 10 2020 22:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46835 * 2 1 4 4 C 1.52990 * 109.47435 * 120.00027 * 2 1 3 5 5 N 1.46496 * 109.47362 * 174.31294 * 4 2 1 6 6 C 1.46500 * 120.00214 * 275.32357 * 5 4 2 7 7 C 1.50708 * 109.47282 * 270.88173 * 6 5 4 8 8 H 1.08002 * 119.99259 * 5.44723 * 7 6 5 9 9 C 1.37873 * 120.00122 * 185.45451 * 7 6 5 10 10 N 1.31515 * 119.99788 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00046 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46659 * 90.00626 * 11 9 7 13 13 H 1.48497 * 109.47368 * 210.00175 * 11 9 7 14 14 H 1.48498 * 109.47482 * 330.00903 * 11 9 7 15 15 C 1.34777 * 120.00073 * 95.32249 * 5 4 2 16 16 O 1.21275 * 119.99930 * 5.02181 * 15 5 4 17 17 C 1.50702 * 120.00283 * 185.02604 * 15 5 4 18 18 H 1.09005 * 109.79149 * 44.08237 * 17 15 5 19 19 C 1.53623 * 109.81205 * 164.82162 * 17 15 5 20 20 C 1.51792 * 110.67724 * 204.68367 * 19 17 15 21 21 C 1.51777 * 113.81438 * 293.10513 * 20 19 17 22 22 C 1.52988 * 110.88049 * 66.99513 * 21 20 19 23 23 N 1.47197 * 108.66859 * 273.54343 * 22 21 20 24 24 C 1.46498 * 119.78416 * 251.96546 * 23 22 21 25 25 C 1.33368 * 120.43149 * 71.99253 * 23 22 21 26 26 O 1.21281 * 119.89328 * 179.65819 * 25 23 22 27 27 H 1.08999 * 109.47663 * 299.99636 * 1 2 3 28 28 H 1.09005 * 109.47571 * 59.99658 * 1 2 3 29 29 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47308 * 240.00710 * 2 1 3 31 31 H 1.08997 * 109.47509 * 185.77267 * 3 2 1 32 32 H 1.08998 * 109.47391 * 305.78025 * 3 2 1 33 33 H 1.09008 * 109.47047 * 65.77427 * 3 2 1 34 34 H 1.09006 * 109.47018 * 54.31339 * 4 2 1 35 35 H 1.09005 * 109.47291 * 294.31475 * 4 2 1 36 36 H 1.08999 * 109.47300 * 30.87834 * 6 5 4 37 37 H 1.08996 * 109.47755 * 150.88256 * 6 5 4 38 38 H 0.96998 * 120.00188 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.32300 * 84.33619 * 19 17 15 40 40 H 1.08998 * 109.15017 * 324.92395 * 19 17 15 41 41 H 1.08998 * 108.61164 * 171.98066 * 20 19 17 42 42 H 1.09001 * 108.61363 * 54.22531 * 20 19 17 43 43 H 1.09001 * 109.19259 * 306.63928 * 21 20 19 44 44 H 1.08996 * 109.19922 * 187.35931 * 21 20 19 45 45 H 1.09000 * 109.60680 * 153.78284 * 22 21 20 46 46 H 1.09005 * 109.73861 * 33.37339 * 22 21 20 47 47 H 1.08998 * 109.47214 * 175.14723 * 24 23 22 48 48 H 1.09001 * 109.47114 * 295.15047 * 24 23 22 49 49 H 1.09004 * 109.46647 * 55.14517 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.4985 -0.8408 1.1826 6 6 4.1097 -1.9547 0.4532 7 6 4.2893 -3.1264 1.3839 8 1 3.9002 -3.0811 2.3903 9 6 4.9504 -4.2560 0.9505 10 7 5.1067 -5.2787 1.7625 11 14 5.6229 -4.3345 -0.7905 12 1 7.0144 -3.8158 -0.8074 13 1 5.6138 -5.7427 -1.2617 14 1 4.7754 -3.5072 -1.6864 15 6 4.2782 0.0738 1.7925 16 8 3.7750 0.9433 2.4719 17 6 5.7754 0.0162 1.6303 18 1 6.0266 -0.1699 0.5860 19 6 6.4000 1.3438 2.0856 20 6 7.7400 1.5660 1.4080 21 6 8.8116 0.5776 1.8302 22 6 8.4721 -0.8340 1.3477 23 7 7.6067 -1.4787 2.3487 24 6 8.1419 -2.5518 3.1903 25 6 6.3384 -1.0928 2.4943 26 8 5.6323 -1.6349 3.3179 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1250 1.4444 -0.1034 32 1 1.5945 1.9854 -0.8337 33 1 1.7634 1.9257 0.9372 34 1 1.5959 -1.7153 1.3015 35 1 1.7622 -0.1520 2.1363 36 1 3.4635 -2.2446 -0.3753 37 1 5.0807 -1.6463 0.0659 38 1 5.5714 -6.0735 1.4575 39 1 6.5432 1.3233 3.1659 40 1 5.7276 2.1621 1.8281 41 1 8.0847 2.5735 1.6407 42 1 7.6014 1.4893 0.3295 43 1 8.8889 0.5757 2.9175 44 1 9.7676 0.8817 1.4042 45 1 9.3893 -1.4111 1.2310 46 1 7.9495 -0.7808 0.3925 47 1 7.3917 -2.8467 3.9239 48 1 8.3976 -3.4089 2.5673 49 1 9.0349 -2.1981 3.7058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874232880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:21 Heat of formation + Delta-G solvation = -75.603283 kcal Electronic energy + Delta-G solvation = -28990.715017 eV Core-core repulsion = 25338.694165 eV Total energy + Delta-G solvation = -3652.020852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.41539 -38.64576 -36.29605 -35.98261 -34.20399 -33.90141 -32.18551 -30.89165 -28.24971 -27.97294 -26.86625 -26.23246 -24.81021 -23.49657 -22.43904 -20.67216 -20.07441 -19.04808 -17.70662 -17.20493 -16.71701 -16.57067 -15.92323 -15.11262 -14.86754 -14.57747 -14.31831 -14.06696 -13.89172 -13.72105 -13.41542 -13.26925 -12.84939 -12.61581 -12.42641 -12.26945 -12.19244 -11.97785 -11.79927 -11.76451 -11.53717 -11.43087 -11.30369 -11.01717 -10.88317 -10.83007 -10.73408 -10.66730 -10.58579 -10.45132 -10.24489 -10.16678 -9.43394 -9.08461 -8.92757 -8.58717 -8.09805 -7.62992 -6.05182 -4.02385 3.13422 3.15770 3.25076 3.26935 3.47301 3.70898 3.87237 4.34150 4.74670 4.84801 4.91527 4.99894 5.19668 5.22915 5.27098 5.30693 5.36183 5.46253 5.53017 5.53807 5.64832 5.75522 5.83402 5.86644 5.95913 5.96735 5.98321 6.00889 6.06746 6.12024 6.16749 6.28593 6.29976 6.32377 6.38035 6.40828 6.48614 6.50147 6.60821 6.66393 6.73619 6.99443 7.42906 7.55211 7.94699 8.22195 8.54935 8.95060 8.96631 9.17102 9.53555 11.07931 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010567 B = 0.007891 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.099379 B = 3547.326784 C = 5201.115957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.136 4.136 4 C 0.124 3.876 5 N -0.582 5.582 6 C 0.209 3.791 7 C -0.516 4.516 8 H 0.089 0.911 9 C 0.079 3.921 10 N -0.887 5.887 11 Si 0.855 3.145 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.546 3.454 16 O -0.560 6.560 17 C -0.125 4.125 18 H 0.106 0.894 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.139 4.139 22 C 0.111 3.889 23 N -0.615 5.615 24 C 0.090 3.910 25 C 0.536 3.464 26 O -0.492 6.492 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 11.536 -5.022 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.193 4.193 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.088 3.912 7 C -0.555 4.555 8 H 0.107 0.893 9 C -0.124 4.124 10 N -0.526 5.526 11 Si 0.682 3.318 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.333 3.667 16 O -0.440 6.440 17 C -0.149 4.149 18 H 0.124 0.876 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.177 4.177 22 C -0.013 4.013 23 N -0.350 5.350 24 C -0.052 4.052 25 C 0.321 3.679 26 O -0.364 6.364 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.695 11.459 -4.199 13.076 hybrid contribution 0.706 -0.521 -1.259 1.534 sum 5.401 10.939 -5.458 13.365 Atomic orbital electron populations 1.21742 0.95055 1.01703 1.01403 1.21524 0.95515 0.96830 0.99446 1.21747 1.00695 0.95694 1.01198 1.21396 0.80432 1.00787 0.97349 1.47732 1.05689 1.25560 1.52070 1.19797 0.92864 0.85628 0.92926 1.21401 1.36548 0.96964 1.00580 0.89344 1.24785 0.95778 0.95673 0.96126 1.69904 1.42357 1.05256 1.35063 0.87193 0.80028 0.77896 0.86686 1.20177 1.21006 1.19147 1.19498 0.87562 0.81011 0.78625 1.90575 1.75351 1.37913 1.40131 1.21749 0.94605 0.96683 1.01864 0.87648 1.21197 0.95745 0.95185 1.01184 1.21183 0.94667 0.99290 1.00634 1.21826 0.98634 0.95005 1.02281 1.21710 0.94891 0.92973 0.91690 1.47415 1.11345 1.37786 1.38458 1.21546 0.98946 0.89230 0.95497 1.19390 0.81304 0.82846 0.84325 1.90782 1.56724 1.53527 1.35355 0.92692 0.92982 0.92558 0.91291 0.93295 0.93732 0.92285 0.90460 0.90349 0.95178 0.96361 0.92890 0.91311 0.90013 0.91593 0.91953 0.91165 0.90938 0.90016 0.91145 0.89148 0.92770 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 2 C -0.11 -1.76 3.12 -90.63 -0.28 -2.05 16 3 C -0.14 -2.05 8.16 37.16 0.30 -1.75 16 4 C 0.12 2.35 4.97 -4.05 -0.02 2.33 16 5 N -0.58 -12.44 2.28 -175.06 -0.40 -12.84 16 6 C 0.21 4.79 3.87 -5.19 -0.02 4.77 16 7 C -0.52 -14.10 7.57 -34.44 -0.26 -14.36 16 8 H 0.09 2.84 7.45 -52.49 -0.39 2.45 16 9 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 11 Si 0.85 20.02 27.36 -169.99 -4.65 15.37 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -5.94 6.70 56.52 0.38 -5.56 16 15 C 0.55 11.63 4.82 -10.98 -0.05 11.58 16 16 O -0.56 -12.68 14.66 5.56 0.08 -12.60 16 17 C -0.12 -2.31 1.41 -92.24 -0.13 -2.44 16 18 H 0.11 1.81 5.35 -51.93 -0.28 1.53 16 19 C -0.09 -1.43 4.71 -27.02 -0.13 -1.56 16 20 C -0.12 -1.34 5.27 -27.96 -0.15 -1.49 16 21 C -0.14 -1.49 5.74 -27.36 -0.16 -1.65 16 22 C 0.11 1.45 5.91 -3.67 -0.02 1.43 16 23 N -0.61 -10.86 2.86 -181.10 -0.52 -11.37 16 24 C 0.09 1.55 10.58 59.85 0.63 2.18 16 25 C 0.54 11.26 5.31 -11.25 -0.06 11.20 16 26 O -0.49 -12.75 13.18 5.56 0.07 -12.67 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 31 H 0.05 0.79 7.03 -51.93 -0.36 0.43 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.94 8.12 -51.92 -0.42 0.52 16 34 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 35 H 0.08 1.55 7.21 -51.93 -0.37 1.18 16 36 H 0.03 0.68 7.49 -51.93 -0.39 0.29 16 37 H 0.02 0.41 5.06 -51.93 -0.26 0.15 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 40 H 0.08 1.24 7.45 -51.93 -0.39 0.85 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 43 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 46 H 0.07 0.93 6.72 -51.93 -0.35 0.58 16 47 H 0.09 1.84 6.87 -51.93 -0.36 1.48 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -33.30 371.48 -7.75 -41.04 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.61 Total: 4.22 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -0.10 Total: 8.80 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.14 Total: -49.75 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.15 Total: -25.27 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.65 Total: 15.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.30 -7.75 -41.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.563 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds