Wall clock time and date at job start Fri Apr 10 2020 22:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46835 * 2 1 4 4 C 1.52990 * 109.47435 * 120.00027 * 2 1 3 5 5 N 1.46496 * 109.47362 * 174.31294 * 4 2 1 6 6 C 1.46500 * 120.00214 * 275.32357 * 5 4 2 7 7 C 1.50708 * 109.47282 * 270.88173 * 6 5 4 8 8 H 1.08002 * 119.99259 * 5.44723 * 7 6 5 9 9 C 1.37873 * 120.00122 * 185.45451 * 7 6 5 10 10 N 1.31515 * 119.99788 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00046 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46659 * 90.00626 * 11 9 7 13 13 H 1.48497 * 109.47368 * 210.00175 * 11 9 7 14 14 H 1.48498 * 109.47482 * 330.00903 * 11 9 7 15 15 C 1.34777 * 120.00073 * 95.32249 * 5 4 2 16 16 O 1.21275 * 119.99930 * 5.02181 * 15 5 4 17 17 C 1.50702 * 120.00283 * 185.02604 * 15 5 4 18 18 H 1.09005 * 109.79149 * 44.08237 * 17 15 5 19 19 C 1.53623 * 109.81205 * 164.82162 * 17 15 5 20 20 C 1.51792 * 110.67724 * 204.68367 * 19 17 15 21 21 C 1.51777 * 113.81438 * 293.10513 * 20 19 17 22 22 C 1.52988 * 110.88049 * 66.99513 * 21 20 19 23 23 N 1.47197 * 108.66859 * 273.54343 * 22 21 20 24 24 C 1.46498 * 119.78416 * 251.96546 * 23 22 21 25 25 C 1.33368 * 120.43149 * 71.99253 * 23 22 21 26 26 O 1.21281 * 119.89328 * 179.65819 * 25 23 22 27 27 H 1.08999 * 109.47663 * 299.99636 * 1 2 3 28 28 H 1.09005 * 109.47571 * 59.99658 * 1 2 3 29 29 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47308 * 240.00710 * 2 1 3 31 31 H 1.08997 * 109.47509 * 185.77267 * 3 2 1 32 32 H 1.08998 * 109.47391 * 305.78025 * 3 2 1 33 33 H 1.09008 * 109.47047 * 65.77427 * 3 2 1 34 34 H 1.09006 * 109.47018 * 54.31339 * 4 2 1 35 35 H 1.09005 * 109.47291 * 294.31475 * 4 2 1 36 36 H 1.08999 * 109.47300 * 30.87834 * 6 5 4 37 37 H 1.08996 * 109.47755 * 150.88256 * 6 5 4 38 38 H 0.96998 * 120.00188 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.32300 * 84.33619 * 19 17 15 40 40 H 1.08998 * 109.15017 * 324.92395 * 19 17 15 41 41 H 1.08998 * 108.61164 * 171.98066 * 20 19 17 42 42 H 1.09001 * 108.61363 * 54.22531 * 20 19 17 43 43 H 1.09001 * 109.19259 * 306.63928 * 21 20 19 44 44 H 1.08996 * 109.19922 * 187.35931 * 21 20 19 45 45 H 1.09000 * 109.60680 * 153.78284 * 22 21 20 46 46 H 1.09005 * 109.73861 * 33.37339 * 22 21 20 47 47 H 1.08998 * 109.47214 * 175.14723 * 24 23 22 48 48 H 1.09001 * 109.47114 * 295.15047 * 24 23 22 49 49 H 1.09004 * 109.46647 * 55.14517 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.4985 -0.8408 1.1826 6 6 4.1097 -1.9547 0.4532 7 6 4.2893 -3.1264 1.3839 8 1 3.9002 -3.0811 2.3903 9 6 4.9504 -4.2560 0.9505 10 7 5.1067 -5.2787 1.7625 11 14 5.6229 -4.3345 -0.7905 12 1 7.0144 -3.8158 -0.8074 13 1 5.6138 -5.7427 -1.2617 14 1 4.7754 -3.5072 -1.6864 15 6 4.2782 0.0738 1.7925 16 8 3.7750 0.9433 2.4719 17 6 5.7754 0.0162 1.6303 18 1 6.0266 -0.1699 0.5860 19 6 6.4000 1.3438 2.0856 20 6 7.7400 1.5660 1.4080 21 6 8.8116 0.5776 1.8302 22 6 8.4721 -0.8340 1.3477 23 7 7.6067 -1.4787 2.3487 24 6 8.1419 -2.5518 3.1903 25 6 6.3384 -1.0928 2.4943 26 8 5.6323 -1.6349 3.3179 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1250 1.4444 -0.1034 32 1 1.5945 1.9854 -0.8337 33 1 1.7634 1.9257 0.9372 34 1 1.5959 -1.7153 1.3015 35 1 1.7622 -0.1520 2.1363 36 1 3.4635 -2.2446 -0.3753 37 1 5.0807 -1.6463 0.0659 38 1 5.5714 -6.0735 1.4575 39 1 6.5432 1.3233 3.1659 40 1 5.7276 2.1621 1.8281 41 1 8.0847 2.5735 1.6407 42 1 7.6014 1.4893 0.3295 43 1 8.8889 0.5757 2.9175 44 1 9.7676 0.8817 1.4042 45 1 9.3893 -1.4111 1.2310 46 1 7.9495 -0.7808 0.3925 47 1 7.3917 -2.8467 3.9239 48 1 8.3976 -3.4089 2.5673 49 1 9.0349 -2.1981 3.7058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874232880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:20 Heat of formation + Delta-G solvation = -97.311772 kcal Electronic energy + Delta-G solvation = -28991.656367 eV Core-core repulsion = 25338.694165 eV Total energy + Delta-G solvation = -3652.962203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94867 -40.21186 -37.74350 -37.43273 -35.80344 -35.30869 -34.18514 -32.18272 -29.97294 -29.42038 -28.06047 -27.68043 -26.16770 -24.79023 -24.35033 -21.83335 -21.31372 -20.52331 -19.31094 -19.03940 -18.36574 -18.14660 -17.48077 -16.69087 -16.29168 -16.19749 -15.73441 -15.59406 -15.10396 -15.01065 -14.75584 -14.50899 -14.38200 -14.27230 -13.88765 -13.80354 -13.56967 -13.52140 -13.18644 -13.13605 -12.96307 -12.81454 -12.67021 -12.58971 -12.39700 -12.34751 -11.94561 -11.89592 -11.81787 -11.65247 -11.59763 -11.53688 -11.49480 -10.78752 -10.66411 -10.60327 -9.52950 -9.37516 -8.18252 -6.22191 1.32173 1.36918 1.45495 1.51423 1.89243 2.23925 2.34465 2.36097 3.12065 3.47016 3.60616 3.76136 3.83347 3.93283 4.02383 4.08212 4.17177 4.21661 4.32780 4.42947 4.50045 4.59350 4.62646 4.65568 4.66466 4.68413 4.74645 4.82989 4.83946 4.94446 4.99677 5.01433 5.05619 5.05904 5.10604 5.19079 5.19570 5.25571 5.39659 5.45653 5.45783 5.48883 5.67621 5.73301 6.28296 6.50174 6.63447 6.86121 7.25954 7.39632 7.43078 8.99189 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010567 B = 0.007891 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.099379 B = 3547.326784 C = 5201.115957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.588 5.588 6 C 0.220 3.780 7 C -0.511 4.511 8 H 0.021 0.979 9 C 0.021 3.979 10 N -0.941 5.941 11 Si 0.926 3.074 12 H -0.254 1.254 13 H -0.288 1.288 14 H -0.239 1.239 15 C 0.536 3.464 16 O -0.581 6.581 17 C -0.121 4.121 18 H 0.126 0.874 19 C -0.088 4.088 20 C -0.117 4.117 21 C -0.131 4.131 22 C 0.097 3.903 23 N -0.613 5.613 24 C 0.093 3.907 25 C 0.528 3.472 26 O -0.561 6.561 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.052 0.948 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 13.689 -8.918 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.317 5.317 6 C 0.098 3.902 7 C -0.549 4.549 8 H 0.040 0.960 9 C -0.177 4.177 10 N -0.581 5.581 11 Si 0.748 3.252 12 H -0.178 1.178 13 H -0.214 1.214 14 H -0.163 1.163 15 C 0.325 3.675 16 O -0.463 6.463 17 C -0.145 4.145 18 H 0.144 0.856 19 C -0.126 4.126 20 C -0.154 4.154 21 C -0.169 4.169 22 C -0.024 4.024 23 N -0.347 5.347 24 C -0.050 4.050 25 C 0.314 3.686 26 O -0.438 6.438 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.915 13.656 -8.127 17.331 hybrid contribution -0.009 -1.220 0.120 1.226 sum 6.906 12.436 -8.007 16.324 Atomic orbital electron populations 1.21718 0.92814 1.02225 1.02655 1.21460 0.97308 0.96625 0.97055 1.21678 0.99954 0.95362 1.01624 1.21527 0.79612 1.00272 0.98974 1.47827 1.06635 1.25159 1.52079 1.19591 0.94029 0.84415 0.92130 1.21308 1.36145 0.99088 0.98405 0.96020 1.25682 0.95936 0.94755 1.01334 1.70109 1.43850 1.06216 1.37966 0.86051 0.80608 0.78187 0.80352 1.17803 1.21405 1.16257 1.20075 0.88967 0.80558 0.77938 1.90547 1.76123 1.38825 1.40767 1.21815 0.92540 0.97734 1.02450 0.85615 1.21214 0.98170 0.92934 1.00270 1.21201 0.92119 1.00843 1.01225 1.21793 1.00223 0.93149 1.01774 1.22188 0.95063 0.94598 0.90528 1.47639 1.10920 1.37257 1.38866 1.21520 0.99009 0.89625 0.94865 1.19882 0.82042 0.82846 0.83798 1.90769 1.58790 1.55973 1.38293 0.92671 0.90464 0.92478 0.90936 0.94632 0.90760 0.93768 0.91962 0.92064 0.93848 0.94541 0.92925 0.93497 0.90154 0.89044 0.89974 0.92322 0.86881 0.87261 0.90557 0.93690 0.92952 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.19 71.98 0.66 -2.61 16 2 C -0.11 -3.15 3.12 -10.80 -0.03 -3.19 16 3 C -0.13 -3.69 8.16 71.98 0.59 -3.10 16 4 C 0.12 4.70 4.97 86.38 0.43 5.13 16 5 N -0.59 -25.80 2.28 -826.16 -1.88 -27.68 16 6 C 0.22 10.06 3.87 85.64 0.33 10.40 16 7 C -0.51 -29.10 7.57 25.60 0.19 -28.91 16 8 H 0.02 1.50 7.45 -2.91 -0.02 1.48 16 9 C 0.02 1.16 5.47 84.65 0.46 1.63 16 10 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 11 Si 0.93 40.34 27.36 68.60 1.88 42.21 16 12 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 13 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.24 -9.34 6.70 99.48 0.67 -8.68 16 15 C 0.54 23.43 4.82 87.66 0.42 23.85 16 16 O -0.58 -27.35 14.66 -3.01 -0.04 -27.39 16 17 C -0.12 -4.45 1.41 -11.84 -0.02 -4.47 16 18 H 0.13 4.00 5.35 -2.38 -0.01 3.99 16 19 C -0.09 -2.53 4.71 30.41 0.14 -2.39 16 20 C -0.12 -2.12 5.27 29.80 0.16 -1.97 16 21 C -0.13 -2.23 5.74 30.19 0.17 -2.06 16 22 C 0.10 2.18 5.91 86.24 0.51 2.69 16 23 N -0.61 -21.21 2.86 -846.07 -2.42 -23.63 16 24 C 0.09 3.20 10.58 127.77 1.35 4.55 16 25 C 0.53 22.71 5.31 88.11 0.47 23.18 16 26 O -0.56 -31.30 13.18 -3.03 -0.04 -31.34 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 31 H 0.03 1.09 7.03 -2.39 -0.02 1.08 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.38 8.12 -2.38 -0.02 1.36 16 34 H 0.06 2.58 8.11 -2.38 -0.02 2.56 16 35 H 0.06 2.59 7.21 -2.38 -0.02 2.57 16 36 H 0.04 1.88 7.49 -2.39 -0.02 1.87 16 37 H 0.04 1.55 5.06 -2.39 -0.01 1.53 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.05 1.54 7.86 -2.39 -0.02 1.52 16 40 H 0.08 2.34 7.45 -2.39 -0.02 2.32 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.24 7.89 -2.39 -0.02 1.22 16 43 H 0.06 1.18 8.05 -2.39 -0.02 1.16 16 44 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 1.87 7.96 -2.39 -0.02 1.85 16 46 H 0.08 1.65 6.72 -2.38 -0.02 1.64 16 47 H 0.04 1.96 6.87 -2.39 -0.02 1.95 16 48 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -80.96 371.48 4.51 -76.46 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.87 Total: 26.74 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 5.84 Total: 22.73 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.00 Total: -109.40 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -0.08 Total: -58.73 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.88 Total: 42.21 kcal Total: -80.96 4.51 -76.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.857 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds