Wall clock time and date at job start Fri Apr 10 2020 22:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47720 * 2 1 4 4 O 1.42902 * 109.47095 * 239.99636 * 2 1 3 5 5 C 1.53008 * 109.46680 * 120.00135 * 2 1 3 6 6 H 1.09003 * 109.49558 * 299.93073 * 5 2 1 7 7 C 1.53043 * 109.49316 * 179.83825 * 5 2 1 8 8 C 1.53042 * 109.53356 * 178.68168 * 7 5 2 9 9 C 1.52764 * 109.38536 * 61.23923 * 8 7 5 10 10 N 1.46930 * 109.00666 * 305.58989 * 9 8 7 11 11 C 1.34777 * 120.62509 * 233.58139 * 10 9 8 12 12 O 1.21588 * 119.99881 * 185.01888 * 11 10 9 13 13 N 1.34778 * 120.00215 * 5.02725 * 11 10 9 14 14 C 1.46495 * 119.99811 * 185.21288 * 13 11 10 15 15 C 1.52998 * 109.47111 * 185.00119 * 14 13 11 16 16 C 1.50702 * 115.55032 * 55.11347 * 15 14 13 17 17 H 1.08006 * 119.99606 * 274.74169 * 16 15 14 18 18 C 1.37872 * 120.00212 * 94.45764 * 16 15 14 19 19 N 1.31522 * 120.00045 * 175.08195 * 18 16 15 20 20 Si 1.86796 * 120.00255 * 355.08489 * 18 16 15 21 21 H 1.48497 * 109.47346 * 94.91168 * 20 18 16 22 22 H 1.48496 * 109.47523 * 214.91591 * 20 18 16 23 23 H 1.48501 * 109.46738 * 334.91341 * 20 18 16 24 24 C 1.53005 * 117.50040 * 200.77911 * 15 14 13 25 25 C 1.52998 * 117.50304 * 269.44085 * 15 14 13 26 26 C 1.46924 * 118.74081 * 53.30492 * 10 9 8 27 27 H 1.09003 * 109.47418 * 300.00222 * 1 2 3 28 28 H 1.09006 * 109.47026 * 59.99482 * 1 2 3 29 29 H 1.08998 * 109.47619 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47806 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47186 * 300.00250 * 3 2 1 32 32 H 1.09010 * 109.47182 * 59.99640 * 3 2 1 33 33 H 0.96693 * 113.99684 * 60.00366 * 4 2 1 34 34 H 1.09001 * 109.46011 * 298.69952 * 7 5 2 35 35 H 1.08991 * 109.46366 * 58.67603 * 7 5 2 36 36 H 1.09001 * 109.49831 * 181.31458 * 8 7 5 37 37 H 1.08993 * 109.50224 * 301.37711 * 8 7 5 38 38 H 1.08995 * 109.51139 * 185.70168 * 9 8 7 39 39 H 1.09003 * 109.43330 * 65.42157 * 9 8 7 40 40 H 0.96995 * 120.00104 * 5.20143 * 13 11 10 41 41 H 1.09005 * 109.47605 * 65.00304 * 14 13 11 42 42 H 1.08998 * 109.47210 * 304.99901 * 14 13 11 43 43 H 0.96999 * 119.99991 * 180.02562 * 19 18 16 44 44 H 1.08994 * 117.49809 * 215.00326 * 24 15 14 45 45 H 1.08998 * 117.49633 * 0.02562 * 24 15 14 46 46 H 1.09007 * 117.49744 * 359.97438 * 25 15 14 47 47 H 1.08996 * 117.50045 * 144.96945 * 25 15 14 48 48 H 1.08997 * 109.58187 * 66.43336 * 26 10 9 49 49 H 1.08995 * 109.58601 * 186.85783 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2493 6 1 1.6777 -0.2071 2.1396 7 6 3.5703 -0.7252 1.2479 8 6 4.0814 -1.4176 2.5134 9 6 3.5939 -2.8652 2.5315 10 7 2.1321 -2.8797 2.3838 11 6 1.3584 -3.5309 3.2748 12 8 0.1590 -3.6132 3.0927 13 7 1.9141 -4.0908 4.3676 14 6 1.0933 -4.8951 5.2761 15 6 1.9293 -5.3058 6.4900 16 6 2.5783 -4.1746 7.2450 17 1 3.5343 -3.7887 6.9228 18 6 1.9491 -3.6283 8.3434 19 7 2.5575 -2.7081 9.0597 20 14 0.2327 -4.1950 8.8145 21 1 0.3285 -5.2632 9.8416 22 1 -0.5342 -3.0480 9.3633 23 1 -0.4608 -4.7245 7.6128 24 6 1.4536 -6.5141 7.2993 25 6 2.6923 -6.6294 6.4073 26 6 1.5295 -2.1657 1.2499 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7210 -0.2702 -1.9979 34 1 3.9313 -1.2609 0.3699 35 1 3.9360 0.3012 1.2229 36 1 5.1712 -1.3994 2.5232 37 1 3.7011 -0.8967 3.3920 38 1 3.8702 -3.3306 3.4776 39 1 4.0499 -3.4119 1.7061 40 1 2.8574 -3.9612 4.5524 41 1 0.7443 -5.7876 4.7567 42 1 0.2362 -4.3087 5.6069 43 1 2.1149 -2.3241 9.8328 44 1 1.6102 -6.4907 8.3777 45 1 0.5454 -7.0166 6.9666 46 1 2.5984 -7.2079 5.4882 47 1 3.6638 -6.6818 6.8985 48 1 1.8138 -2.6541 0.3179 49 1 0.4442 -2.1697 1.3507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875554771.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:23 Heat of formation + Delta-G solvation = -59.891993 kcal Electronic energy + Delta-G solvation = -27347.658420 eV Core-core repulsion = 23696.318860 eV Total energy + Delta-G solvation = -3651.339559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30126 -38.87454 -37.21660 -36.36832 -33.68683 -32.93758 -32.10479 -31.98862 -29.88775 -27.85224 -26.65535 -25.37711 -24.44834 -23.38110 -21.75373 -21.29077 -20.05696 -19.43204 -18.97731 -17.72219 -16.63984 -16.33599 -15.70317 -15.54559 -15.07835 -14.72744 -14.65385 -14.32136 -14.06741 -13.98991 -13.63209 -13.34148 -13.20891 -12.93628 -12.88429 -12.69907 -12.36882 -12.32272 -12.02986 -11.97429 -11.91347 -11.35816 -11.17917 -11.09349 -10.82366 -10.76069 -10.61376 -10.45004 -10.38917 -10.12362 -10.00754 -9.70535 -9.51914 -9.12883 -8.63723 -8.59071 -8.46625 -7.97192 -6.15460 -4.19022 3.07905 3.29366 3.40581 3.47953 3.72721 4.02557 4.34442 4.41503 4.53887 4.55446 4.73488 4.91777 4.95590 5.04230 5.11458 5.16679 5.24103 5.31264 5.42621 5.45392 5.56829 5.61170 5.63968 5.72833 5.81504 5.84551 5.90105 5.94140 5.98064 6.02086 6.06009 6.09273 6.13829 6.22606 6.30068 6.43514 6.44477 6.51043 6.71751 6.82696 7.01277 7.11449 7.27393 7.44437 7.48269 7.69859 8.40894 8.56952 8.83522 9.16210 9.48429 10.95818 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003553 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.595461 B = 7877.768645 C = 7995.446200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.179 4.179 4 O -0.556 6.556 5 C -0.088 4.088 6 H 0.084 0.916 7 C -0.109 4.109 8 C -0.138 4.138 9 C 0.113 3.887 10 N -0.633 5.633 11 C 0.704 3.296 12 O -0.605 6.605 13 N -0.718 5.718 14 C 0.175 3.825 15 C -0.015 4.015 16 C -0.488 4.488 17 H 0.077 0.923 18 C 0.080 3.920 19 N -0.895 5.895 20 Si 0.881 3.119 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.256 1.256 24 C -0.193 4.193 25 C -0.180 4.180 26 C 0.140 3.860 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.372 0.628 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.400 0.600 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.265 0.735 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 5.178 -18.501 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.093 3.907 3 C -0.237 4.237 4 O -0.362 6.362 5 C -0.108 4.108 6 H 0.102 0.898 7 C -0.146 4.146 8 C -0.177 4.177 9 C -0.011 4.011 10 N -0.371 5.371 11 C 0.406 3.594 12 O -0.485 6.485 13 N -0.373 5.373 14 C 0.050 3.950 15 C -0.016 4.016 16 C -0.525 4.525 17 H 0.095 0.905 18 C -0.123 4.123 19 N -0.532 5.532 20 Si 0.709 3.291 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.180 1.180 24 C -0.231 4.231 25 C -0.218 4.218 26 C 0.017 3.983 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.219 0.781 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.237 0.763 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.855 4.807 -17.980 18.631 hybrid contribution -0.712 0.359 0.219 0.827 sum 0.143 5.166 -17.761 18.498 Atomic orbital electron populations 1.22565 0.95707 1.03348 1.02444 1.21130 0.92478 0.91050 0.85998 1.22532 1.02475 0.96244 1.02409 1.86572 1.77068 1.57061 1.15472 1.21578 0.96692 0.96652 0.95874 0.89781 1.21533 0.94285 1.00706 0.98113 1.21884 1.00834 0.96058 0.98891 1.21506 0.80473 0.97049 1.02081 1.47218 1.05943 1.56085 1.27864 1.15903 0.84869 0.78578 0.80097 1.90840 1.13193 1.66180 1.78285 1.45138 1.13944 1.54682 1.23581 1.20918 0.93121 0.92510 0.88435 1.19632 0.98157 0.88938 0.94900 1.20125 1.06194 1.15243 1.10987 0.90497 1.24966 0.97506 0.94295 0.95499 1.69894 1.37798 1.27938 1.17580 0.86833 0.85114 0.77779 0.79380 1.20644 1.22227 1.18024 1.22898 0.97449 1.04540 0.98198 1.22914 0.95939 1.02790 1.00138 1.21387 0.99150 0.89878 0.87897 0.91426 0.92481 0.91151 0.91375 0.92510 0.91543 0.78104 0.91034 0.91833 0.90700 0.91148 0.89959 0.91730 0.76258 0.94290 0.92016 0.92546 0.89188 0.90630 0.90920 0.89420 0.91289 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.47 37.16 0.31 -1.33 16 2 C 0.13 1.23 0.77 -90.62 -0.07 1.16 16 3 C -0.18 -1.38 8.47 37.15 0.31 -1.06 16 4 O -0.56 -4.98 11.57 -35.23 -0.41 -5.39 16 5 C -0.09 -1.02 1.76 -90.50 -0.16 -1.18 16 6 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 7 C -0.11 -1.15 4.69 -26.69 -0.13 -1.27 16 8 C -0.14 -1.58 6.06 -26.83 -0.16 -1.75 16 9 C 0.11 1.46 6.40 -3.93 -0.03 1.43 16 10 N -0.63 -10.04 2.98 -178.77 -0.53 -10.57 16 11 C 0.70 14.04 8.29 -86.92 -0.72 13.32 16 12 O -0.61 -14.04 15.76 5.29 0.08 -13.95 16 13 N -0.72 -14.35 5.25 -65.23 -0.34 -14.69 16 14 C 0.17 3.80 5.44 -4.05 -0.02 3.78 16 15 C -0.01 -0.34 0.97 -155.66 -0.15 -0.49 16 16 C -0.49 -12.85 8.86 -34.44 -0.31 -13.15 16 17 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 18 C 0.08 2.23 5.46 -17.82 -0.10 2.14 16 19 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 20 Si 0.88 21.74 24.73 -169.99 -4.20 17.53 16 21 H -0.28 -6.74 7.09 56.52 0.40 -6.33 16 22 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.26 -6.13 5.81 56.52 0.33 -5.80 16 24 C -0.19 -4.03 7.34 -26.69 -0.20 -4.23 16 25 C -0.18 -3.52 9.93 -26.69 -0.27 -3.78 16 26 C 0.14 1.97 5.10 -3.71 -0.02 1.95 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 30 H 0.07 0.53 6.40 -51.93 -0.33 0.20 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.37 1.95 9.04 45.56 0.41 2.36 16 34 H 0.07 0.78 7.72 -51.93 -0.40 0.37 16 35 H 0.06 0.60 6.36 -51.93 -0.33 0.27 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.11 5.58 -51.93 -0.29 0.82 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 7.50 5.63 -40.82 -0.23 7.27 16 41 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 42 H 0.06 1.49 7.09 -51.93 -0.37 1.13 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 44 H 0.09 1.97 6.67 -51.93 -0.35 1.63 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 48 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 49 H 0.09 1.42 5.65 -51.93 -0.29 1.12 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -32.00 370.54 -8.35 -40.34 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.62 Total: 11.32 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.69 Total: -4.46 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.10 Total: -50.97 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.32 Total: -19.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.20 Total: 17.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.00 -8.35 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875554771.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.548 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds