Wall clock time and date at job start Fri Apr 10 2020 22:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47720 * 2 1 4 4 O 1.42902 * 109.47095 * 239.99636 * 2 1 3 5 5 C 1.53008 * 109.46680 * 120.00135 * 2 1 3 6 6 H 1.09003 * 109.49558 * 299.93073 * 5 2 1 7 7 C 1.53043 * 109.49316 * 179.83825 * 5 2 1 8 8 C 1.53042 * 109.53356 * 178.68168 * 7 5 2 9 9 C 1.52764 * 109.38536 * 61.23923 * 8 7 5 10 10 N 1.46930 * 109.00666 * 305.58989 * 9 8 7 11 11 C 1.34777 * 120.62509 * 233.58139 * 10 9 8 12 12 O 1.21588 * 119.99881 * 185.01888 * 11 10 9 13 13 N 1.34778 * 120.00215 * 5.02725 * 11 10 9 14 14 C 1.46495 * 119.99811 * 185.21288 * 13 11 10 15 15 C 1.52998 * 109.47111 * 185.00119 * 14 13 11 16 16 C 1.50702 * 115.55032 * 55.11347 * 15 14 13 17 17 H 1.08006 * 119.99606 * 274.74169 * 16 15 14 18 18 C 1.37872 * 120.00212 * 94.45764 * 16 15 14 19 19 N 1.31522 * 120.00045 * 175.08195 * 18 16 15 20 20 Si 1.86796 * 120.00255 * 355.08489 * 18 16 15 21 21 H 1.48497 * 109.47346 * 94.91168 * 20 18 16 22 22 H 1.48496 * 109.47523 * 214.91591 * 20 18 16 23 23 H 1.48501 * 109.46738 * 334.91341 * 20 18 16 24 24 C 1.53005 * 117.50040 * 200.77911 * 15 14 13 25 25 C 1.52998 * 117.50304 * 269.44085 * 15 14 13 26 26 C 1.46924 * 118.74081 * 53.30492 * 10 9 8 27 27 H 1.09003 * 109.47418 * 300.00222 * 1 2 3 28 28 H 1.09006 * 109.47026 * 59.99482 * 1 2 3 29 29 H 1.08998 * 109.47619 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47806 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47186 * 300.00250 * 3 2 1 32 32 H 1.09010 * 109.47182 * 59.99640 * 3 2 1 33 33 H 0.96693 * 113.99684 * 60.00366 * 4 2 1 34 34 H 1.09001 * 109.46011 * 298.69952 * 7 5 2 35 35 H 1.08991 * 109.46366 * 58.67603 * 7 5 2 36 36 H 1.09001 * 109.49831 * 181.31458 * 8 7 5 37 37 H 1.08993 * 109.50224 * 301.37711 * 8 7 5 38 38 H 1.08995 * 109.51139 * 185.70168 * 9 8 7 39 39 H 1.09003 * 109.43330 * 65.42157 * 9 8 7 40 40 H 0.96995 * 120.00104 * 5.20143 * 13 11 10 41 41 H 1.09005 * 109.47605 * 65.00304 * 14 13 11 42 42 H 1.08998 * 109.47210 * 304.99901 * 14 13 11 43 43 H 0.96999 * 119.99991 * 180.02562 * 19 18 16 44 44 H 1.08994 * 117.49809 * 215.00326 * 24 15 14 45 45 H 1.08998 * 117.49633 * 0.02562 * 24 15 14 46 46 H 1.09007 * 117.49744 * 359.97438 * 25 15 14 47 47 H 1.08996 * 117.50045 * 144.96945 * 25 15 14 48 48 H 1.08997 * 109.58187 * 66.43336 * 26 10 9 49 49 H 1.08995 * 109.58601 * 186.85783 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2493 6 1 1.6777 -0.2071 2.1396 7 6 3.5703 -0.7252 1.2479 8 6 4.0814 -1.4176 2.5134 9 6 3.5939 -2.8652 2.5315 10 7 2.1321 -2.8797 2.3838 11 6 1.3584 -3.5309 3.2748 12 8 0.1590 -3.6132 3.0927 13 7 1.9141 -4.0908 4.3676 14 6 1.0933 -4.8951 5.2761 15 6 1.9293 -5.3058 6.4900 16 6 2.5783 -4.1746 7.2450 17 1 3.5343 -3.7887 6.9228 18 6 1.9491 -3.6283 8.3434 19 7 2.5575 -2.7081 9.0597 20 14 0.2327 -4.1950 8.8145 21 1 0.3285 -5.2632 9.8416 22 1 -0.5342 -3.0480 9.3633 23 1 -0.4608 -4.7245 7.6128 24 6 1.4536 -6.5141 7.2993 25 6 2.6923 -6.6294 6.4073 26 6 1.5295 -2.1657 1.2499 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7210 -0.2702 -1.9979 34 1 3.9313 -1.2609 0.3699 35 1 3.9360 0.3012 1.2229 36 1 5.1712 -1.3994 2.5232 37 1 3.7011 -0.8967 3.3920 38 1 3.8702 -3.3306 3.4776 39 1 4.0499 -3.4119 1.7061 40 1 2.8574 -3.9612 4.5524 41 1 0.7443 -5.7876 4.7567 42 1 0.2362 -4.3087 5.6069 43 1 2.1149 -2.3241 9.8328 44 1 1.6102 -6.4907 8.3777 45 1 0.5454 -7.0166 6.9666 46 1 2.5984 -7.2079 5.4882 47 1 3.6638 -6.6818 6.8985 48 1 1.8138 -2.6541 0.3179 49 1 0.4442 -2.1697 1.3507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875554771.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:23 Heat of formation + Delta-G solvation = -82.410758 kcal Electronic energy + Delta-G solvation = -27348.634907 eV Core-core repulsion = 23696.318860 eV Total energy + Delta-G solvation = -3652.316046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56938 -39.99830 -38.81127 -37.54965 -35.18804 -34.23364 -33.97315 -33.00666 -30.84290 -28.71503 -28.23810 -27.20724 -25.63002 -24.44354 -23.38486 -22.34447 -21.20642 -20.94273 -20.37293 -19.19762 -18.22401 -17.45645 -17.10315 -16.85846 -16.70495 -16.02262 -15.69343 -15.57950 -15.32779 -15.11396 -14.89322 -14.72941 -14.56489 -14.28274 -14.16142 -13.92668 -13.83814 -13.70636 -13.10811 -13.03414 -12.74150 -12.69734 -12.63335 -12.29438 -12.16828 -12.06925 -11.96331 -11.71845 -11.60680 -11.59073 -11.31808 -11.08026 -10.93755 -10.77287 -10.65612 -10.38499 -10.03823 -9.37307 -8.30479 -6.35176 1.31443 1.39175 1.50364 1.70877 2.16696 2.36020 2.93442 3.04308 3.31792 3.35724 3.65716 3.71189 3.97473 4.01266 4.03871 4.09682 4.17893 4.35807 4.37872 4.39751 4.41233 4.54513 4.57878 4.64454 4.70305 4.77060 4.79797 4.85503 4.86785 4.90414 4.95948 5.02691 5.08778 5.10159 5.13216 5.21167 5.24533 5.28497 5.44082 5.49112 5.51078 5.57653 5.67676 5.71930 6.01136 6.27783 6.71522 6.98222 7.05494 7.34645 7.60326 8.84044 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003553 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.595461 B = 7877.768645 C = 7995.446200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.141 3.859 3 C -0.175 4.175 4 O -0.567 6.567 5 C -0.087 4.087 6 H 0.066 0.934 7 C -0.101 4.101 8 C -0.135 4.135 9 C 0.107 3.893 10 N -0.628 5.628 11 C 0.697 3.303 12 O -0.643 6.643 13 N -0.718 5.718 14 C 0.184 3.816 15 C -0.040 4.040 16 C -0.475 4.475 17 H 0.047 0.953 18 C 0.028 3.972 19 N -0.942 5.942 20 Si 0.929 3.071 21 H -0.266 1.266 22 H -0.305 1.305 23 H -0.244 1.244 24 C -0.193 4.193 25 C -0.152 4.152 26 C 0.141 3.859 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.390 0.610 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.405 0.595 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.264 0.736 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 4.527 -20.599 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.232 4.232 4 O -0.375 6.375 5 C -0.107 4.107 6 H 0.084 0.916 7 C -0.138 4.138 8 C -0.173 4.173 9 C -0.015 4.015 10 N -0.365 5.365 11 C 0.399 3.601 12 O -0.526 6.526 13 N -0.374 5.374 14 C 0.059 3.941 15 C -0.041 4.041 16 C -0.513 4.513 17 H 0.066 0.934 18 C -0.170 4.170 19 N -0.582 5.582 20 Si 0.755 3.245 21 H -0.192 1.192 22 H -0.233 1.233 23 H -0.168 1.168 24 C -0.231 4.231 25 C -0.189 4.189 26 C 0.019 3.981 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.243 0.757 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.383 4.155 -20.121 20.592 hybrid contribution -0.783 0.570 0.777 1.242 sum 0.600 4.726 -19.345 19.923 Atomic orbital electron populations 1.22557 0.95886 1.02373 1.03188 1.20968 0.92232 0.91573 0.85196 1.22484 1.02537 0.94985 1.03199 1.86517 1.77167 1.57595 1.16217 1.21541 0.97609 0.94802 0.96733 0.91591 1.21494 0.93185 1.01598 0.97572 1.21877 1.02218 0.94673 0.98550 1.21747 0.78611 0.98535 1.02634 1.47330 1.07062 1.54918 1.27156 1.16104 0.84694 0.78820 0.80526 1.90804 1.14961 1.67684 1.79179 1.45072 1.14013 1.54781 1.23512 1.20697 0.92200 0.92711 0.88512 1.19473 1.00251 0.88836 0.95542 1.20300 1.04879 1.15675 1.10436 0.93435 1.25669 1.00658 0.94663 0.96026 1.70013 1.39451 1.30039 1.18680 0.86053 0.81368 0.77367 0.79703 1.19183 1.23330 1.16768 1.22975 0.99236 1.03135 0.97707 1.22938 0.95346 0.99839 1.00805 1.21465 0.97926 0.91472 0.87256 0.92259 0.90175 0.92982 0.91170 0.90552 0.91988 0.76008 0.90476 0.90253 0.88296 0.93326 0.90710 0.89388 0.75675 0.92710 0.95041 0.92730 0.90322 0.88255 0.87868 0.89504 0.90570 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.47 71.98 0.61 -2.54 16 2 C 0.14 2.37 0.77 -10.79 -0.01 2.36 16 3 C -0.17 -2.28 8.47 71.98 0.61 -1.67 16 4 O -0.57 -8.79 11.57 -148.98 -1.72 -10.52 16 5 C -0.09 -1.95 1.76 -10.71 -0.02 -1.97 16 6 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 7 C -0.10 -1.94 4.69 30.62 0.14 -1.80 16 8 C -0.13 -2.91 6.06 30.53 0.19 -2.73 16 9 C 0.11 2.66 6.40 86.22 0.55 3.21 16 10 N -0.63 -19.85 2.98 -837.75 -2.50 -22.35 16 11 C 0.70 28.14 8.29 179.05 1.49 29.62 16 12 O -0.64 -30.52 15.76 -3.99 -0.06 -30.58 16 13 N -0.72 -28.75 5.25 -478.54 -2.51 -31.26 16 14 C 0.18 7.89 5.44 86.38 0.47 8.36 16 15 C -0.04 -1.73 0.97 -52.93 -0.05 -1.79 16 16 C -0.48 -25.31 8.86 25.60 0.23 -25.08 16 17 H 0.05 2.75 8.06 -2.91 -0.02 2.72 16 18 C 0.03 1.58 5.46 84.65 0.46 2.05 16 19 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 20 Si 0.93 44.99 24.73 68.60 1.70 46.69 16 21 H -0.27 -12.22 7.09 99.48 0.71 -11.51 16 22 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 23 H -0.24 -11.27 5.81 99.48 0.58 -10.69 16 24 C -0.19 -7.57 7.34 30.62 0.22 -7.34 16 25 C -0.15 -5.51 9.93 30.62 0.30 -5.20 16 26 C 0.14 3.96 5.10 86.36 0.44 4.40 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 29 H 0.05 1.09 6.56 -2.39 -0.02 1.07 16 30 H 0.07 0.90 6.40 -2.39 -0.02 0.89 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.39 2.95 9.04 -74.06 -0.67 2.28 16 34 H 0.08 1.45 7.72 -2.39 -0.02 1.43 16 35 H 0.08 1.31 6.36 -2.39 -0.02 1.29 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.97 5.58 -2.39 -0.01 1.96 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.40 15.24 5.63 -92.71 -0.52 14.72 16 41 H 0.05 2.17 8.09 -2.38 -0.02 2.15 16 42 H 0.03 1.53 7.09 -2.39 -0.02 1.51 16 43 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.08 3.28 6.67 -2.39 -0.02 3.27 16 45 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 46 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 47 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.08 2.02 7.54 -2.39 -0.02 2.01 16 49 H 0.07 2.20 5.65 -2.39 -0.01 2.18 16 Total: -1.00 -70.66 370.54 0.46 -70.20 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.37 Total: 35.00 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.63 Total: -0.12 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.71 Total: -110.66 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.79 Total: -41.10 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.70 Total: 46.69 kcal Total: -70.66 0.46 -70.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875554771.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.216 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds