Wall clock time and date at job start Fri Apr 10 2020 22:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47345 * 2 1 4 4 O 1.42893 * 109.47172 * 240.00051 * 2 1 3 5 5 C 1.53001 * 109.47225 * 120.00091 * 2 1 3 6 6 H 1.08999 * 109.49998 * 65.06254 * 5 2 1 7 7 C 1.53038 * 109.49861 * 185.16342 * 5 2 1 8 8 C 1.53043 * 109.54009 * 181.31505 * 7 5 2 9 9 C 1.53623 * 109.24326 * 298.51066 * 8 7 5 10 10 N 1.46929 * 108.54208 * 54.85153 * 9 8 7 11 11 C 1.34777 * 120.62760 * 126.37268 * 10 9 8 12 12 O 1.21591 * 119.99871 * 184.97579 * 11 10 9 13 13 N 1.34777 * 120.00322 * 4.96866 * 11 10 9 14 14 C 1.46502 * 120.00018 * 175.23823 * 13 11 10 15 15 C 1.53004 * 109.46681 * 185.10772 * 14 13 11 16 16 C 1.50693 * 115.56511 * 268.83339 * 15 14 13 17 17 H 1.07993 * 120.00171 * 142.13083 * 16 15 14 18 18 C 1.37876 * 119.99888 * 322.13894 * 16 15 14 19 19 N 1.31514 * 119.99963 * 344.35473 * 18 16 15 20 20 Si 1.86799 * 120.00055 * 164.35921 * 18 16 15 21 21 H 1.48499 * 109.47489 * 59.99570 * 20 18 16 22 22 H 1.48503 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46828 * 299.99408 * 20 18 16 24 24 C 1.53005 * 117.49703 * 54.53001 * 15 14 13 25 25 C 1.53002 * 117.49114 * 123.14828 * 15 14 13 26 26 C 1.46923 * 118.74068 * 306.09777 * 10 9 8 27 27 H 1.08999 * 109.47161 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47076 * 59.99740 * 1 2 3 29 29 H 1.08994 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47425 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46896 * 300.00504 * 3 2 1 32 32 H 1.08999 * 109.46945 * 59.99924 * 3 2 1 33 33 H 0.96698 * 114.00136 * 299.99524 * 4 2 1 34 34 H 1.09000 * 109.46393 * 301.33367 * 7 5 2 35 35 H 1.09000 * 109.46280 * 61.30884 * 7 5 2 36 36 H 1.09004 * 109.49845 * 58.58448 * 8 7 5 37 37 H 1.08997 * 109.50311 * 178.64891 * 8 7 5 38 38 H 1.09001 * 109.73869 * 295.11985 * 9 8 7 39 39 H 1.08997 * 109.66944 * 174.54367 * 9 8 7 40 40 H 0.97003 * 119.99827 * 355.23531 * 13 11 10 41 41 H 1.09000 * 109.46816 * 65.11236 * 14 13 11 42 42 H 1.08991 * 109.46981 * 305.10950 * 14 13 11 43 43 H 0.97005 * 119.99692 * 185.02334 * 19 18 16 44 44 H 1.09002 * 117.49768 * 359.97438 * 24 15 14 45 45 H 1.09003 * 117.49202 * 214.97543 * 24 15 14 46 46 H 1.09008 * 117.49654 * 145.02305 * 25 15 14 47 47 H 1.08994 * 117.52390 * 359.97438 * 25 15 14 48 48 H 1.09005 * 109.58916 * 173.64923 * 26 10 9 49 49 H 1.09004 * 109.58639 * 293.92935 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2492 6 1 1.7529 -1.7718 1.2055 7 6 3.5649 -0.6102 1.3164 8 6 4.0789 -1.3592 2.5481 9 6 3.4914 -0.7161 3.8135 10 7 2.0276 -0.6927 3.6892 11 6 1.2481 -1.2219 4.6530 12 8 0.0434 -1.2780 4.4979 13 7 1.8038 -1.6890 5.7885 14 6 0.9503 -2.1679 6.8786 15 6 1.8181 -2.5201 8.0886 16 6 2.2901 -3.9496 8.1563 17 1 3.2836 -4.1738 8.5154 18 6 1.4536 -4.9713 7.7597 19 7 0.1652 -4.7488 7.6179 20 14 2.1502 -6.6717 7.4238 21 1 2.7960 -7.1942 8.6548 22 1 1.0523 -7.5847 7.0157 23 1 3.1559 -6.5883 6.3344 24 6 2.7610 -1.4388 8.6204 25 6 1.5061 -1.8157 9.4105 26 6 1.4296 -0.0759 2.4973 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7211 -1.5952 -1.2328 34 1 4.0008 -1.0467 0.4179 35 1 3.8498 0.4397 1.3851 36 1 3.7730 -2.4040 2.4924 37 1 5.1667 -1.3000 2.5823 38 1 3.8657 0.3024 3.9166 39 1 3.7745 -1.3019 4.6880 40 1 2.7690 -1.7080 5.8839 41 1 0.4062 -3.0540 6.5515 42 1 0.2414 -1.3875 7.1547 43 1 -0.4338 -5.4829 7.4101 44 1 2.7633 -0.4767 8.1080 45 1 3.7227 -1.7616 9.0192 46 1 1.6424 -2.3864 10.3292 47 1 0.6831 -1.1012 9.4185 48 1 0.3518 -0.2391 2.5031 49 1 1.6370 0.9942 2.4965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875554772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:25 Heat of formation + Delta-G solvation = -58.649170 kcal Electronic energy + Delta-G solvation = -27398.282898 eV Core-core repulsion = 23746.997231 eV Total energy + Delta-G solvation = -3651.285666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37536 -38.85030 -36.97728 -36.24035 -33.65570 -32.72696 -32.26112 -32.15954 -29.52628 -27.72539 -26.39616 -25.48864 -24.37957 -23.66682 -21.47812 -21.21608 -19.87835 -19.27843 -18.95717 -17.94609 -16.73446 -16.18527 -15.74062 -15.32848 -15.01234 -14.83893 -14.61752 -14.36461 -14.17347 -13.79691 -13.63914 -13.48423 -13.04913 -12.99837 -12.66504 -12.45510 -12.32023 -12.09729 -11.83481 -11.67213 -11.56078 -11.47119 -11.09496 -11.00740 -10.95330 -10.85882 -10.77232 -10.52408 -10.38295 -10.33627 -9.92124 -9.65413 -9.32541 -9.18696 -8.82247 -8.47013 -8.22716 -7.78701 -6.11500 -4.14966 3.09517 3.24204 3.31746 3.32786 3.79419 4.01370 4.31244 4.40397 4.53907 4.57832 4.73400 4.88065 4.93738 5.02312 5.07110 5.10268 5.25438 5.42655 5.46117 5.49885 5.55809 5.61448 5.69010 5.75048 5.75333 5.82791 5.86158 5.92356 5.98919 6.01304 6.09253 6.14487 6.30794 6.31320 6.50257 6.59040 6.72319 6.75010 6.94392 7.01194 7.26983 7.42220 7.47481 7.53674 7.67113 7.99198 8.35035 8.62710 8.81604 9.25694 9.43721 10.90019 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.003651 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.571005 B = 7666.611154 C = 8059.108759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.143 4.143 4 O -0.560 6.560 5 C -0.127 4.127 6 H 0.076 0.924 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.111 3.889 10 N -0.636 5.636 11 C 0.700 3.300 12 O -0.598 6.598 13 N -0.727 5.727 14 C 0.161 3.839 15 C 0.042 3.958 16 C -0.498 4.498 17 H 0.062 0.938 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.210 4.210 25 C -0.193 4.193 26 C 0.136 3.864 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.375 0.625 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.390 0.610 41 H 0.117 0.883 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 9.892 -13.958 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.094 3.906 3 C -0.200 4.200 4 O -0.366 6.366 5 C -0.147 4.147 6 H 0.095 0.905 7 C -0.146 4.146 8 C -0.174 4.174 9 C -0.013 4.013 10 N -0.375 5.375 11 C 0.402 3.598 12 O -0.477 6.477 13 N -0.381 5.381 14 C 0.039 3.961 15 C 0.041 3.959 16 C -0.535 4.535 17 H 0.080 0.920 18 C -0.131 4.131 19 N -0.504 5.504 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.248 4.248 25 C -0.231 4.231 26 C 0.012 3.988 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.223 0.777 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.226 0.774 41 H 0.134 0.866 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.113 0.887 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.225 10.331 -14.219 18.336 hybrid contribution 0.581 -1.489 0.193 1.610 sum 5.806 8.842 -14.026 17.568 Atomic orbital electron populations 1.22575 0.95643 1.02901 1.02947 1.21117 0.92527 0.92821 0.84126 1.21881 1.02168 0.93582 1.02372 1.86520 1.77356 1.28946 1.43793 1.22222 0.96672 1.00855 0.94939 0.90512 1.21540 0.94386 1.00763 0.97957 1.22012 1.00261 1.00424 0.94733 1.21680 0.80450 1.00722 0.98409 1.47238 1.05553 1.63490 1.21198 1.15952 0.85074 0.78494 0.80304 1.90860 1.12896 1.63782 1.80193 1.45583 1.10321 1.66630 1.15566 1.21222 0.91002 0.99416 0.84451 1.19176 0.95160 0.91718 0.89856 1.20472 1.00278 0.88680 1.44082 0.91985 1.24987 0.94626 0.99039 0.94476 1.69818 1.02252 1.32199 1.46173 0.86654 0.78834 0.83608 0.78944 1.20183 1.21140 1.20098 1.22855 0.94565 0.99855 1.07528 1.22965 0.97178 1.04280 0.98686 1.21479 0.99441 0.95484 0.82390 0.90942 0.91916 0.92105 0.91493 0.92103 0.90901 0.77750 0.91320 0.91570 0.91394 0.90846 0.91774 0.90028 0.77448 0.86594 0.94823 0.92362 0.91405 0.90561 0.90177 0.91569 0.88685 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.33 37.16 0.31 -1.41 16 2 C 0.14 1.28 0.87 -90.62 -0.08 1.20 16 3 C -0.14 -1.24 8.12 37.16 0.30 -0.93 16 4 O -0.56 -5.45 12.50 -35.23 -0.44 -5.89 16 5 C -0.13 -1.36 1.91 -90.50 -0.17 -1.54 16 6 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.11 -1.06 4.54 -26.69 -0.12 -1.19 16 8 C -0.14 -1.43 6.10 -26.39 -0.16 -1.59 16 9 C 0.11 1.35 6.42 -3.48 -0.02 1.33 16 10 N -0.64 -9.75 2.97 -178.23 -0.53 -10.27 16 11 C 0.70 14.22 8.30 -86.92 -0.72 13.50 16 12 O -0.60 -14.43 15.77 5.29 0.08 -14.35 16 13 N -0.73 -14.98 5.31 -65.22 -0.35 -15.32 16 14 C 0.16 3.91 5.43 -4.04 -0.02 3.89 16 15 C 0.04 1.00 1.85 -155.66 -0.29 0.71 16 16 C -0.50 -13.01 9.00 -34.44 -0.31 -13.32 16 17 H 0.06 1.60 7.86 -52.49 -0.41 1.19 16 18 C 0.07 1.93 5.08 -17.82 -0.09 1.84 16 19 N -0.87 -24.12 11.00 55.43 0.61 -23.51 16 20 Si 0.89 20.52 29.57 -169.99 -5.03 15.50 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.21 -4.30 9.47 -26.73 -0.25 -4.56 16 25 C -0.19 -4.30 9.88 -26.73 -0.26 -4.56 16 26 C 0.14 1.76 4.89 -3.71 -0.02 1.74 16 27 H 0.07 0.70 6.48 -51.93 -0.34 0.37 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.58 6.46 -51.93 -0.34 0.24 16 33 H 0.38 2.62 9.05 45.56 0.41 3.04 16 34 H 0.07 0.67 7.79 -51.93 -0.40 0.26 16 35 H 0.07 0.60 6.42 -51.93 -0.33 0.27 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.04 5.64 -51.93 -0.29 0.74 16 40 H 0.39 7.20 5.68 -40.82 -0.23 6.97 16 41 H 0.12 3.24 5.29 -51.93 -0.27 2.97 16 42 H 0.03 0.84 7.87 -51.93 -0.41 0.43 16 43 H 0.27 7.12 8.32 -40.82 -0.34 6.78 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.80 8.14 -51.92 -0.42 1.38 16 47 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 48 H 0.09 1.42 5.56 -51.93 -0.29 1.13 16 49 H 0.06 0.69 6.36 -51.93 -0.33 0.36 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -30.74 373.22 -9.28 -40.02 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -7.35 Total: 13.09 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.91 Total: -4.88 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.27 Total: -49.11 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.36 Total: -20.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.74 -9.28 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875554772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.627 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds