Wall clock time and date at job start Fri Apr 10 2020 22:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47345 * 2 1 4 4 O 1.42893 * 109.47172 * 240.00051 * 2 1 3 5 5 C 1.53001 * 109.47225 * 120.00091 * 2 1 3 6 6 H 1.08999 * 109.49998 * 65.06254 * 5 2 1 7 7 C 1.53038 * 109.49861 * 185.16342 * 5 2 1 8 8 C 1.53043 * 109.54009 * 181.31505 * 7 5 2 9 9 C 1.53623 * 109.24326 * 298.51066 * 8 7 5 10 10 N 1.46929 * 108.54208 * 54.85153 * 9 8 7 11 11 C 1.34777 * 120.62760 * 126.37268 * 10 9 8 12 12 O 1.21591 * 119.99871 * 184.97579 * 11 10 9 13 13 N 1.34777 * 120.00322 * 4.96866 * 11 10 9 14 14 C 1.46502 * 120.00018 * 175.23823 * 13 11 10 15 15 C 1.53004 * 109.46681 * 185.10772 * 14 13 11 16 16 C 1.50693 * 115.56511 * 268.83339 * 15 14 13 17 17 H 1.07993 * 120.00171 * 142.13083 * 16 15 14 18 18 C 1.37876 * 119.99888 * 322.13894 * 16 15 14 19 19 N 1.31514 * 119.99963 * 344.35473 * 18 16 15 20 20 Si 1.86799 * 120.00055 * 164.35921 * 18 16 15 21 21 H 1.48499 * 109.47489 * 59.99570 * 20 18 16 22 22 H 1.48503 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46828 * 299.99408 * 20 18 16 24 24 C 1.53005 * 117.49703 * 54.53001 * 15 14 13 25 25 C 1.53002 * 117.49114 * 123.14828 * 15 14 13 26 26 C 1.46923 * 118.74068 * 306.09777 * 10 9 8 27 27 H 1.08999 * 109.47161 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47076 * 59.99740 * 1 2 3 29 29 H 1.08994 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47425 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46896 * 300.00504 * 3 2 1 32 32 H 1.08999 * 109.46945 * 59.99924 * 3 2 1 33 33 H 0.96698 * 114.00136 * 299.99524 * 4 2 1 34 34 H 1.09000 * 109.46393 * 301.33367 * 7 5 2 35 35 H 1.09000 * 109.46280 * 61.30884 * 7 5 2 36 36 H 1.09004 * 109.49845 * 58.58448 * 8 7 5 37 37 H 1.08997 * 109.50311 * 178.64891 * 8 7 5 38 38 H 1.09001 * 109.73869 * 295.11985 * 9 8 7 39 39 H 1.08997 * 109.66944 * 174.54367 * 9 8 7 40 40 H 0.97003 * 119.99827 * 355.23531 * 13 11 10 41 41 H 1.09000 * 109.46816 * 65.11236 * 14 13 11 42 42 H 1.08991 * 109.46981 * 305.10950 * 14 13 11 43 43 H 0.97005 * 119.99692 * 185.02334 * 19 18 16 44 44 H 1.09002 * 117.49768 * 359.97438 * 24 15 14 45 45 H 1.09003 * 117.49202 * 214.97543 * 24 15 14 46 46 H 1.09008 * 117.49654 * 145.02305 * 25 15 14 47 47 H 1.08994 * 117.52390 * 359.97438 * 25 15 14 48 48 H 1.09005 * 109.58916 * 173.64923 * 26 10 9 49 49 H 1.09004 * 109.58639 * 293.92935 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2492 6 1 1.7529 -1.7718 1.2055 7 6 3.5649 -0.6102 1.3164 8 6 4.0789 -1.3592 2.5481 9 6 3.4914 -0.7161 3.8135 10 7 2.0276 -0.6927 3.6892 11 6 1.2481 -1.2219 4.6530 12 8 0.0434 -1.2780 4.4979 13 7 1.8038 -1.6890 5.7885 14 6 0.9503 -2.1679 6.8786 15 6 1.8181 -2.5201 8.0886 16 6 2.2901 -3.9496 8.1563 17 1 3.2836 -4.1738 8.5154 18 6 1.4536 -4.9713 7.7597 19 7 0.1652 -4.7488 7.6179 20 14 2.1502 -6.6717 7.4238 21 1 2.7960 -7.1942 8.6548 22 1 1.0523 -7.5847 7.0157 23 1 3.1559 -6.5883 6.3344 24 6 2.7610 -1.4388 8.6204 25 6 1.5061 -1.8157 9.4105 26 6 1.4296 -0.0759 2.4973 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7211 -1.5952 -1.2328 34 1 4.0008 -1.0467 0.4179 35 1 3.8498 0.4397 1.3851 36 1 3.7730 -2.4040 2.4924 37 1 5.1667 -1.3000 2.5823 38 1 3.8657 0.3024 3.9166 39 1 3.7745 -1.3019 4.6880 40 1 2.7690 -1.7080 5.8839 41 1 0.4062 -3.0540 6.5515 42 1 0.2414 -1.3875 7.1547 43 1 -0.4338 -5.4829 7.4101 44 1 2.7633 -0.4767 8.1080 45 1 3.7227 -1.7616 9.0192 46 1 1.6424 -2.3864 10.3292 47 1 0.6831 -1.1012 9.4185 48 1 0.3518 -0.2391 2.5031 49 1 1.6370 0.9942 2.4965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875554772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:25 Heat of formation + Delta-G solvation = -78.846088 kcal Electronic energy + Delta-G solvation = -27399.158702 eV Core-core repulsion = 23746.997231 eV Total energy + Delta-G solvation = -3652.161471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59046 -40.04743 -38.60308 -37.47008 -35.07634 -34.24884 -33.91201 -33.18929 -30.44960 -28.51378 -28.06937 -27.28194 -25.62811 -24.70040 -23.05365 -22.33539 -21.16657 -20.94658 -20.15471 -19.35485 -17.98035 -17.61427 -17.12988 -16.76668 -16.46711 -15.99733 -15.87881 -15.54785 -15.36388 -15.25360 -14.83742 -14.75758 -14.33809 -14.19162 -13.89432 -13.57278 -13.43665 -13.34406 -13.09400 -12.86674 -12.81219 -12.70940 -12.58323 -12.40659 -12.33950 -12.10215 -11.97446 -11.82987 -11.73401 -11.44453 -11.28642 -11.10181 -11.05049 -10.66786 -10.66411 -10.16344 -9.93008 -9.33016 -8.11460 -6.20156 1.40819 1.44173 1.50781 1.74168 2.21575 2.39598 2.94306 3.11318 3.30039 3.61980 3.65609 3.75510 3.87393 4.04238 4.15107 4.16738 4.22900 4.24459 4.35471 4.53225 4.55788 4.66522 4.69114 4.73192 4.78701 4.84074 4.86585 4.87857 4.93272 4.98000 4.99920 5.07496 5.09459 5.13751 5.21562 5.24634 5.30929 5.33994 5.50436 5.54358 5.57687 5.63890 5.79226 5.97658 6.05446 6.37046 6.78784 6.82621 7.12821 7.40917 7.67685 8.88885 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.003651 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.571005 B = 7666.611154 C = 8059.108759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.141 3.859 3 C -0.144 4.144 4 O -0.568 6.568 5 C -0.119 4.119 6 H 0.056 0.944 7 C -0.103 4.103 8 C -0.131 4.131 9 C 0.104 3.896 10 N -0.627 5.627 11 C 0.694 3.306 12 O -0.645 6.645 13 N -0.722 5.722 14 C 0.178 3.822 15 C 0.012 3.988 16 C -0.508 4.508 17 H 0.063 0.937 18 C 0.026 3.974 19 N -0.901 5.901 20 Si 0.950 3.050 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.270 1.270 24 C -0.174 4.174 25 C -0.199 4.199 26 C 0.132 3.868 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.385 0.615 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.401 0.599 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.262 0.738 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.793 11.122 -14.942 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.200 4.200 4 O -0.375 6.375 5 C -0.138 4.138 6 H 0.075 0.925 7 C -0.141 4.141 8 C -0.169 4.169 9 C -0.018 4.018 10 N -0.365 5.365 11 C 0.395 3.605 12 O -0.528 6.528 13 N -0.377 5.377 14 C 0.054 3.946 15 C 0.011 3.989 16 C -0.545 4.545 17 H 0.082 0.918 18 C -0.174 4.174 19 N -0.538 5.538 20 Si 0.776 3.224 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.195 1.195 24 C -0.211 4.211 25 C -0.237 4.237 26 C 0.010 3.990 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.239 0.761 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.037 11.576 -15.230 20.750 hybrid contribution -0.273 -1.829 0.473 1.909 sum 7.764 9.747 -14.757 19.315 Atomic orbital electron populations 1.22570 0.95967 1.02476 1.03022 1.21063 0.92250 0.93322 0.83407 1.21910 1.02539 0.92664 1.02923 1.86498 1.77469 1.29939 1.43616 1.22131 0.97672 0.99595 0.94448 0.92533 1.21526 0.93035 1.01718 0.97789 1.21995 1.01764 0.99068 0.94088 1.21992 0.78117 1.02571 0.99153 1.47301 1.06822 1.61970 1.20372 1.16177 0.84859 0.78532 0.80932 1.90822 1.15223 1.65578 1.81184 1.45330 1.10491 1.66752 1.15144 1.20710 0.91198 0.97149 0.85589 1.19160 0.97439 0.91991 0.90324 1.20770 1.00150 0.89943 1.43649 0.91848 1.25685 0.94747 1.02471 0.94539 1.69977 1.03400 1.32831 1.47591 0.85735 0.78008 0.79646 0.79045 1.19261 1.21636 1.19490 1.22857 0.94021 0.99205 1.04996 1.22961 0.98813 1.04247 0.97728 1.21662 0.98175 0.96859 0.82340 0.91560 0.91089 0.92869 0.90875 0.91775 0.90225 0.76558 0.90712 0.89865 0.93439 0.88144 0.88857 0.90668 0.76084 0.90503 0.96532 0.92875 0.89328 0.89211 0.90683 0.91145 0.91239 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 8.33 71.98 0.60 -2.73 16 2 C 0.14 2.44 0.87 -10.79 -0.01 2.43 16 3 C -0.14 -2.09 8.12 71.98 0.58 -1.51 16 4 O -0.57 -10.00 12.50 -148.98 -1.86 -11.86 16 5 C -0.12 -2.39 1.91 -10.72 -0.02 -2.41 16 6 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 7 C -0.10 -1.71 4.54 30.62 0.14 -1.57 16 8 C -0.13 -2.39 6.10 30.82 0.19 -2.21 16 9 C 0.10 2.26 6.42 86.51 0.56 2.82 16 10 N -0.63 -18.69 2.97 -836.04 -2.48 -21.17 16 11 C 0.69 28.61 8.30 179.05 1.49 30.09 16 12 O -0.65 -32.47 15.77 -4.00 -0.06 -32.54 16 13 N -0.72 -29.92 5.31 -478.53 -2.54 -32.46 16 14 C 0.18 8.83 5.43 86.38 0.47 9.30 16 15 C 0.01 0.56 1.85 -52.93 -0.10 0.46 16 16 C -0.51 -26.49 9.00 25.60 0.23 -26.26 16 17 H 0.06 3.21 7.86 -2.91 -0.02 3.19 16 18 C 0.03 1.41 5.08 84.65 0.43 1.84 16 19 N -0.90 -51.67 11.00 21.45 0.24 -51.44 16 20 Si 0.95 42.41 29.57 68.60 2.03 44.44 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C -0.17 -6.72 9.47 30.60 0.29 -6.43 16 25 C -0.20 -8.76 9.88 30.60 0.30 -8.46 16 26 C 0.13 3.31 4.89 86.36 0.42 3.74 16 27 H 0.07 1.29 6.48 -2.39 -0.02 1.27 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.99 6.37 -2.39 -0.02 0.97 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.04 6.46 -2.39 -0.02 1.02 16 33 H 0.39 4.91 9.05 -74.06 -0.67 4.24 16 34 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 35 H 0.08 1.15 6.42 -2.39 -0.02 1.13 16 36 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.75 5.64 -2.39 -0.01 1.73 16 40 H 0.40 14.47 5.68 -92.71 -0.53 13.94 16 41 H 0.08 4.50 5.29 -2.39 -0.01 4.49 16 42 H 0.02 0.85 7.87 -2.39 -0.02 0.83 16 43 H 0.26 14.55 8.32 -92.70 -0.77 13.77 16 44 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 47 H 0.07 3.00 8.03 -2.39 -0.02 2.98 16 48 H 0.07 2.13 5.56 -2.38 -0.01 2.12 16 49 H 0.09 1.74 6.36 -2.39 -0.02 1.73 16 Total: -1.00 -68.15 373.22 0.65 -67.50 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.24 Total: 38.43 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.57 Total: -0.90 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.78 Total: -105.07 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.93 Total: -44.40 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.15 0.65 -67.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875554772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.343 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds