Wall clock time and date at job start Fri Apr 10 2020 22:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 2 15 15 O 1.21595 * 119.99869 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00179 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99844 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.05151 * 35.02652 * 17 16 14 19 19 C 1.54056 * 110.06832 * 273.54131 * 17 16 14 20 20 C 1.54322 * 106.57463 * 240.23700 * 19 17 16 21 21 C 1.55027 * 104.28753 * 23.46035 * 20 19 17 22 22 C 1.53482 * 110.06767 * 156.57211 * 17 16 14 23 23 C 1.53639 * 110.60981 * 337.44636 * 22 17 16 24 24 C 1.55483 * 101.99902 * 216.64873 * 23 22 17 25 25 C 1.55017 * 101.02834 * 33.49596 * 24 23 22 26 26 O 1.42377 * 111.40079 * 216.68924 * 22 17 16 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 36 36 H 0.97003 * 119.99531 * 359.97438 * 13 12 2 37 37 H 0.96996 * 120.00043 * 359.97438 * 16 14 13 38 38 H 1.09003 * 110.03450 * 359.51969 * 19 17 16 39 39 H 1.09002 * 110.03196 * 120.95611 * 19 17 16 40 40 H 1.09004 * 110.46850 * 142.16261 * 20 19 17 41 41 H 1.08998 * 110.47394 * 264.62945 * 20 19 17 42 42 H 1.09002 * 110.76602 * 81.15355 * 21 20 19 43 43 H 1.09000 * 110.77147 * 204.36228 * 21 20 19 44 44 H 1.09001 * 110.92520 * 334.82416 * 23 22 17 45 45 H 1.09001 * 110.92368 * 98.47172 * 23 22 17 46 46 H 1.09008 * 111.10759 * 275.55892 * 24 23 22 47 47 H 1.09003 * 111.14787 * 151.45540 * 24 23 22 48 48 H 1.08996 * 110.30642 * 205.06271 * 25 24 23 49 49 H 1.09005 * 110.38383 * 82.95513 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1196 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4796 3.7810 16 7 1.4280 0.1441 4.7699 17 6 1.7819 -0.3565 6.1005 18 1 2.7919 -0.7663 6.0892 19 6 0.7776 -1.4377 6.5430 20 6 0.1172 -0.9213 7.8386 21 6 0.2876 0.6180 7.7677 22 6 1.6830 0.7753 7.1325 23 6 1.8034 2.1447 6.4465 24 6 2.6093 2.9619 7.4954 25 6 3.5188 1.8592 8.0954 26 8 2.7063 0.6717 8.1169 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.7089 1.1614 -3.4843 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 0.9943 0.7581 2.3564 37 1 0.8701 0.9325 4.6810 38 1 0.0220 -1.5837 5.7711 39 1 1.2994 -2.3747 6.7375 40 1 -0.9397 -1.1872 7.8599 41 1 0.6281 -1.3234 8.7134 42 1 -0.4785 1.0628 7.1326 43 1 0.2624 1.0561 8.7655 44 1 2.3542 2.0636 5.5094 45 1 0.8201 2.5853 6.2816 46 1 1.9507 3.3837 8.2548 47 1 3.2015 3.7414 7.0161 48 1 3.8223 2.1282 9.1070 49 1 4.3956 1.7063 7.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883687104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:28 Heat of formation + Delta-G solvation = -84.882305 kcal Electronic energy + Delta-G solvation = -27149.635728 eV Core-core repulsion = 23497.212507 eV Total energy + Delta-G solvation = -3652.423221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91608 -39.25184 -36.84568 -36.05315 -33.53907 -33.06174 -32.32459 -30.75748 -29.34062 -27.79757 -25.71451 -25.52958 -24.88993 -24.20710 -22.26181 -21.02161 -20.61022 -19.62868 -18.74069 -18.26241 -16.73666 -16.26357 -15.84584 -15.56350 -15.44594 -15.00744 -14.68357 -14.47500 -14.17617 -13.80993 -13.65415 -13.46393 -12.87049 -12.84068 -12.64710 -12.22578 -12.16143 -12.01572 -11.76136 -11.42311 -11.31257 -11.26785 -11.17907 -10.93246 -10.83408 -10.79411 -10.71730 -10.66395 -10.36934 -10.19843 -9.80363 -9.70172 -9.61668 -9.28990 -8.91632 -8.78588 -8.39966 -8.17185 -6.01098 -4.10952 2.94996 3.31151 3.35149 3.39265 3.62779 3.70276 4.12326 4.24466 4.39924 4.49997 4.61049 4.67902 4.77303 4.90561 5.02367 5.19973 5.25688 5.38247 5.43836 5.46333 5.48551 5.51797 5.55908 5.59781 5.72342 5.78757 5.84528 5.98063 6.11216 6.21997 6.27795 6.38644 6.52072 6.63857 6.81870 6.83531 6.90348 6.94453 7.04504 7.11926 7.32128 7.43474 7.57010 7.70845 8.02345 8.13689 8.39629 8.51032 8.88839 9.08094 9.54738 11.00291 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.002905 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.867938 B = 9635.103423 C = 9954.604083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.596 6.596 16 N -0.745 5.745 17 C 0.159 3.841 18 H 0.096 0.904 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.124 4.124 22 C 0.099 3.901 23 C -0.152 4.152 24 C -0.154 4.154 25 C 0.048 3.952 26 O -0.359 6.359 27 H 0.084 0.916 28 H 0.005 0.995 29 H 0.026 0.974 30 H 0.005 0.995 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.392 0.608 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 5.798 20.839 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.475 6.475 16 N -0.403 5.403 17 C 0.053 3.947 18 H 0.114 0.886 19 C -0.171 4.171 20 C -0.158 4.158 21 C -0.162 4.162 22 C 0.059 3.941 23 C -0.190 4.190 24 C -0.192 4.192 25 C -0.029 4.029 26 O -0.278 6.278 27 H 0.103 0.897 28 H 0.024 0.976 29 H 0.045 0.955 30 H 0.024 0.976 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.227 0.773 37 H 0.226 0.774 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.327 4.800 20.882 21.468 hybrid contribution -0.193 0.459 -1.092 1.200 sum -1.520 5.258 19.790 20.533 Atomic orbital electron populations 1.21814 0.97792 0.99145 0.99943 1.18352 0.92774 0.92746 0.90554 1.21811 0.98543 0.98381 0.99935 1.20961 1.31480 1.12109 0.89904 0.92463 1.24873 0.94866 0.94924 0.98821 1.69797 1.36710 1.22749 1.23285 0.86631 0.79252 0.79805 0.82161 1.20269 1.21360 1.20278 1.21573 0.97845 0.95419 0.82393 1.45503 1.55644 1.33021 1.04590 1.16069 0.80494 0.83050 0.80642 1.90889 1.43064 1.27549 1.86004 1.45275 1.57140 1.33385 1.04485 1.21385 1.00290 0.92830 0.80224 0.88589 1.22618 0.98531 0.98704 0.97262 1.22353 1.00473 0.94864 0.98129 1.22727 0.94789 0.97301 1.01388 1.22415 0.89045 0.94354 0.88304 1.23197 1.02030 0.93991 0.99764 1.23271 0.98822 0.98431 0.98663 1.23489 0.93965 0.84076 1.01349 1.88355 1.43426 1.39859 1.56142 0.89684 0.97584 0.95469 0.97610 0.95494 0.89676 0.92991 0.92991 0.93010 0.77302 0.77360 0.91030 0.91036 0.91629 0.91255 0.90390 0.90721 0.89298 0.89618 0.90421 0.89845 0.89701 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.89 8.08 37.15 0.30 -2.59 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.57 9.35 55.43 0.52 -23.05 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.15 3.25 4.50 -4.04 -0.02 3.23 16 13 N -0.73 -13.13 4.96 -65.23 -0.32 -13.45 16 14 C 0.70 12.44 8.56 -86.93 -0.74 11.70 16 15 O -0.60 -13.12 16.02 5.28 0.08 -13.04 16 16 N -0.75 -9.79 3.87 -57.89 -0.22 -10.02 16 17 C 0.16 2.02 2.86 -67.13 -0.19 1.83 16 18 H 0.10 1.50 7.54 -51.93 -0.39 1.11 16 19 C -0.13 -1.58 6.60 -25.49 -0.17 -1.75 16 20 C -0.12 -1.14 6.84 -24.97 -0.17 -1.31 16 21 C -0.12 -1.07 6.00 -25.08 -0.15 -1.22 16 22 C 0.10 1.01 0.98 -89.46 -0.09 0.92 16 23 C -0.15 -1.28 4.72 -25.08 -0.12 -1.40 16 24 C -0.15 -1.12 7.16 -24.35 -0.17 -1.29 16 25 C 0.05 0.41 7.79 38.22 0.30 0.71 16 26 O -0.36 -4.06 10.76 -35.23 -0.38 -4.44 16 27 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.39 6.25 6.18 -40.82 -0.25 6.00 16 37 H 0.39 4.11 7.20 -40.82 -0.29 3.82 16 38 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.58 7.72 -51.93 -0.40 0.18 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.87 6.85 -51.93 -0.36 0.51 16 45 H 0.09 0.58 7.55 -51.93 -0.39 0.19 16 46 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -29.64 372.24 -9.56 -39.20 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.46 Total: 7.92 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.37 Total: -4.47 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.03 Total: -46.53 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.29 Total: -17.48 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.64 -9.56 -39.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883687104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.684 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds