Wall clock time and date at job start Fri Apr 10 2020 22:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 2 15 15 O 1.21595 * 119.99869 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00179 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99844 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.05151 * 35.02652 * 17 16 14 19 19 C 1.54056 * 110.06832 * 273.54131 * 17 16 14 20 20 C 1.54322 * 106.57463 * 240.23700 * 19 17 16 21 21 C 1.55027 * 104.28753 * 23.46035 * 20 19 17 22 22 C 1.53482 * 110.06767 * 156.57211 * 17 16 14 23 23 C 1.53639 * 110.60981 * 337.44636 * 22 17 16 24 24 C 1.55483 * 101.99902 * 216.64873 * 23 22 17 25 25 C 1.55017 * 101.02834 * 33.49596 * 24 23 22 26 26 O 1.42377 * 111.40079 * 216.68924 * 22 17 16 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 36 36 H 0.97003 * 119.99531 * 359.97438 * 13 12 2 37 37 H 0.96996 * 120.00043 * 359.97438 * 16 14 13 38 38 H 1.09003 * 110.03450 * 359.51969 * 19 17 16 39 39 H 1.09002 * 110.03196 * 120.95611 * 19 17 16 40 40 H 1.09004 * 110.46850 * 142.16261 * 20 19 17 41 41 H 1.08998 * 110.47394 * 264.62945 * 20 19 17 42 42 H 1.09002 * 110.76602 * 81.15355 * 21 20 19 43 43 H 1.09000 * 110.77147 * 204.36228 * 21 20 19 44 44 H 1.09001 * 110.92520 * 334.82416 * 23 22 17 45 45 H 1.09001 * 110.92368 * 98.47172 * 23 22 17 46 46 H 1.09008 * 111.10759 * 275.55892 * 24 23 22 47 47 H 1.09003 * 111.14787 * 151.45540 * 24 23 22 48 48 H 1.08996 * 110.30642 * 205.06271 * 25 24 23 49 49 H 1.09005 * 110.38383 * 82.95513 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1196 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4796 3.7810 16 7 1.4280 0.1441 4.7699 17 6 1.7819 -0.3565 6.1005 18 1 2.7919 -0.7663 6.0892 19 6 0.7776 -1.4377 6.5430 20 6 0.1172 -0.9213 7.8386 21 6 0.2876 0.6180 7.7677 22 6 1.6830 0.7753 7.1325 23 6 1.8034 2.1447 6.4465 24 6 2.6093 2.9619 7.4954 25 6 3.5188 1.8592 8.0954 26 8 2.7063 0.6717 8.1169 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.7089 1.1614 -3.4843 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 0.9943 0.7581 2.3564 37 1 0.8701 0.9325 4.6810 38 1 0.0220 -1.5837 5.7711 39 1 1.2994 -2.3747 6.7375 40 1 -0.9397 -1.1872 7.8599 41 1 0.6281 -1.3234 8.7134 42 1 -0.4785 1.0628 7.1326 43 1 0.2624 1.0561 8.7655 44 1 2.3542 2.0636 5.5094 45 1 0.8201 2.5853 6.2816 46 1 1.9507 3.3837 8.2548 47 1 3.2015 3.7414 7.0161 48 1 3.8223 2.1282 9.1070 49 1 4.3956 1.7063 7.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883687104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:27 Heat of formation + Delta-G solvation = -102.881611 kcal Electronic energy + Delta-G solvation = -27150.416236 eV Core-core repulsion = 23497.212507 eV Total energy + Delta-G solvation = -3653.203729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86490 -40.57195 -38.31435 -37.29506 -35.05121 -34.46692 -33.07960 -32.54679 -30.09741 -28.85339 -27.54482 -27.39027 -26.44510 -25.19890 -23.00861 -22.13194 -21.61630 -20.72330 -20.44189 -19.64538 -17.78938 -17.69301 -17.05053 -16.67890 -16.60864 -16.44788 -16.26555 -15.55271 -15.22389 -15.19009 -14.77077 -14.62846 -14.58393 -14.16742 -13.98840 -13.37505 -13.21506 -13.08227 -13.03177 -12.75245 -12.66862 -12.61589 -12.57717 -12.23265 -12.13173 -12.08277 -12.05588 -11.65887 -11.57298 -11.46971 -11.42819 -11.34884 -11.14122 -10.70186 -10.58835 -10.39060 -10.23217 -9.65957 -8.01549 -6.17004 1.44666 1.45637 1.52106 1.70769 2.19830 2.46582 2.85173 3.22054 3.34322 3.47402 3.50049 3.77657 3.86625 4.07199 4.15683 4.33356 4.39424 4.42614 4.51999 4.54393 4.68485 4.72380 4.72873 4.76914 4.83260 4.89418 4.93856 4.99597 5.02254 5.03989 5.07668 5.11831 5.19038 5.19488 5.21704 5.27832 5.36260 5.40213 5.56718 5.63792 5.68141 5.69032 6.06871 6.13881 6.17176 6.23380 6.45045 6.86869 7.17036 7.50557 7.64817 8.97155 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.002905 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.867938 B = 9635.103423 C = 9954.604083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.168 3.832 13 N -0.724 5.724 14 C 0.697 3.303 15 O -0.641 6.641 16 N -0.720 5.720 17 C 0.155 3.845 18 H 0.058 0.942 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.117 4.117 22 C 0.101 3.899 23 C -0.154 4.154 24 C -0.145 4.145 25 C 0.038 3.962 26 O -0.382 6.382 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.260 0.740 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.406 0.594 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 7.704 22.293 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.044 3.956 13 N -0.379 5.379 14 C 0.397 3.603 15 O -0.523 6.523 16 N -0.378 5.378 17 C 0.049 3.951 18 H 0.077 0.923 19 C -0.172 4.172 20 C -0.152 4.152 21 C -0.154 4.154 22 C 0.060 3.940 23 C -0.191 4.191 24 C -0.183 4.183 25 C -0.038 4.038 26 O -0.301 6.301 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.243 0.757 37 H 0.248 0.752 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.129 0.871 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.120 0.880 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.750 6.758 22.368 23.528 hybrid contribution 0.294 -0.170 -1.495 1.533 sum -2.455 6.588 20.873 22.026 Atomic orbital electron populations 1.21652 0.96996 0.98592 1.00411 1.18345 0.93324 0.93067 0.90035 1.21647 0.97806 0.97752 1.00413 1.21258 1.31834 1.12232 0.91677 0.93877 1.25423 0.95127 0.95590 1.00850 1.69894 1.36908 1.23185 1.23660 0.85841 0.78620 0.78833 0.79657 1.20331 1.20710 1.20331 1.21109 0.96571 0.94640 0.83300 1.45162 1.55818 1.33206 1.03727 1.16188 0.80116 0.82674 0.81332 1.90866 1.45095 1.29732 1.86653 1.45002 1.56212 1.33159 1.03436 1.21473 0.98534 0.94565 0.80561 0.92343 1.22583 0.98066 0.97904 0.98630 1.22324 1.01013 0.95726 0.96176 1.22749 0.93852 0.96421 1.02395 1.22437 0.89862 0.93968 0.87686 1.23235 1.03454 0.93252 0.99198 1.23264 0.98579 0.97857 0.98552 1.23676 0.93735 0.83979 1.02408 1.88338 1.44085 1.41450 1.56203 0.91862 0.94323 0.96489 0.94318 0.96499 0.91865 0.92999 0.94854 0.94872 0.75740 0.75209 0.91775 0.92789 0.89997 0.91583 0.88415 0.89418 0.90900 0.87056 0.88681 0.88816 0.87986 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 4 C -0.53 -28.32 8.01 25.60 0.21 -28.12 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.58 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.60 9.35 21.45 0.20 -47.40 16 8 Si 0.94 42.72 29.54 68.60 2.03 44.75 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.33 4.50 86.38 0.39 7.72 16 13 N -0.72 -25.25 4.96 -478.54 -2.37 -27.63 16 14 C 0.70 24.76 8.56 179.06 1.53 26.29 16 15 O -0.64 -29.09 16.02 -4.01 -0.06 -29.15 16 16 N -0.72 -18.15 3.87 -455.32 -1.76 -19.91 16 17 C 0.15 3.91 2.86 45.51 0.13 4.04 16 18 H 0.06 1.93 7.54 -2.39 -0.02 1.91 16 19 C -0.13 -3.15 6.60 31.40 0.21 -2.94 16 20 C -0.11 -1.95 6.84 31.74 0.22 -1.73 16 21 C -0.12 -1.63 6.00 31.67 0.19 -1.44 16 22 C 0.10 1.86 0.98 -10.04 -0.01 1.85 16 23 C -0.15 -2.15 4.72 31.66 0.15 -2.00 16 24 C -0.15 -1.66 7.16 32.14 0.23 -1.43 16 25 C 0.04 0.60 7.79 72.67 0.57 1.17 16 26 O -0.38 -8.21 10.76 -148.98 -1.60 -9.81 16 27 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 28 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 29 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 33 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 34 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.41 11.90 6.18 -92.71 -0.57 11.33 16 37 H 0.41 7.50 7.20 -92.71 -0.67 6.83 16 38 H 0.06 1.60 7.92 -2.39 -0.02 1.58 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.10 1.01 7.72 -2.39 -0.02 0.99 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.27 6.85 -2.39 -0.02 1.25 16 45 H 0.11 1.00 7.55 -2.39 -0.02 0.98 16 46 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -65.74 372.24 1.50 -64.24 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.30 Total: 26.34 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.38 Total: -1.42 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -3.94 Total: -94.94 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.67 Total: -38.96 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -65.74 1.50 -64.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883687104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.641 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds