Wall clock time and date at job start Fri Apr 10 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47380 * 2 1 4 4 C 1.50698 * 109.47172 * 239.99922 * 2 1 3 5 5 H 1.08006 * 120.00032 * 241.34745 * 4 2 1 6 6 C 1.37873 * 120.00017 * 61.34846 * 4 2 1 7 7 N 1.31511 * 120.00034 * 193.97571 * 6 4 2 8 8 Si 1.86800 * 119.99881 * 13.97552 * 6 4 2 9 9 H 1.48498 * 109.47209 * 84.55064 * 8 6 4 10 10 H 1.48512 * 109.46843 * 204.55039 * 8 6 4 11 11 H 1.48495 * 109.47121 * 324.54501 * 8 6 4 12 12 C 1.53004 * 109.47091 * 119.99598 * 2 1 3 13 13 N 1.46497 * 109.47541 * 300.00051 * 12 2 1 14 14 C 1.34775 * 120.00109 * 179.97438 * 13 12 2 15 15 O 1.21587 * 119.99870 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00010 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00074 * 180.02562 * 16 14 13 18 18 C 1.52984 * 109.39527 * 84.75795 * 17 16 14 19 19 C 1.53166 * 109.41275 * 181.80504 * 18 17 16 20 20 C 1.52581 * 109.30796 * 302.43446 * 19 18 17 21 21 C 1.53553 * 113.66656 * 284.24604 * 20 19 18 22 22 O 1.44277 * 85.36749 * 223.40147 * 21 20 19 23 23 C 1.44272 * 93.41584 * 23.84889 * 22 21 20 24 24 C 1.52584 * 113.23038 * 55.93356 * 20 19 18 25 25 C 1.52974 * 109.43580 * 205.00063 * 17 16 14 26 26 H 1.09005 * 109.47288 * 309.36675 * 1 2 3 27 27 H 1.08997 * 109.47353 * 69.37024 * 1 2 3 28 28 H 1.09002 * 109.47445 * 189.36750 * 1 2 3 29 29 H 1.08993 * 109.47473 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47256 * 300.00600 * 3 2 1 31 31 H 1.09006 * 109.46954 * 59.99417 * 3 2 1 32 32 H 0.97006 * 120.00379 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47058 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.46983 * 60.00682 * 12 2 1 35 35 H 0.96998 * 119.99885 * 0.02562 * 13 12 2 36 36 H 0.97004 * 119.99915 * 359.97438 * 16 14 13 37 37 H 1.09005 * 109.43487 * 324.91118 * 17 16 14 38 38 H 1.08998 * 109.44986 * 61.84397 * 18 17 16 39 39 H 1.08999 * 109.51234 * 301.80600 * 18 17 16 40 40 H 1.09001 * 109.50307 * 182.47270 * 19 18 17 41 41 H 1.08999 * 109.50195 * 62.39556 * 19 18 17 42 42 H 1.09002 * 113.88753 * 337.51083 * 21 20 19 43 43 H 1.08999 * 113.88363 * 109.29118 * 21 20 19 44 44 H 1.08996 * 113.88781 * 222.04481 * 23 22 21 45 45 H 1.08999 * 114.00937 * 90.27042 * 23 22 21 46 46 H 1.08998 * 109.50034 * 63.98328 * 24 20 19 47 47 H 1.08997 * 109.50602 * 184.06893 * 24 20 19 48 48 H 1.09005 * 109.48220 * 58.18928 * 25 17 16 49 49 H 1.09003 * 109.49245 * 298.16755 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5459 8 14 1.0275 1.5006 -2.6683 9 1 2.1416 2.4816 -2.7083 10 1 0.2469 1.5864 -3.9288 11 1 0.1417 1.8042 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6696 15 8 2.5759 -1.4799 3.7811 16 7 1.4272 0.1438 4.7700 17 6 1.7811 -0.3567 6.1006 18 6 3.1460 0.2021 6.5071 19 6 3.5369 -0.3565 7.8786 20 6 2.4581 0.0032 8.8959 21 6 2.4992 1.4710 9.3449 22 8 2.2905 0.9486 10.6735 23 6 2.8343 -0.3463 10.3431 24 6 1.0666 -0.4751 8.4921 25 6 0.7204 0.0864 7.1098 26 1 -0.3634 0.6519 0.7945 27 1 -0.3634 0.3621 -0.9617 28 1 -0.3634 -1.0140 0.1673 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6973 -0.6301 -4.4268 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7489 1.2493 35 1 0.9937 0.7578 2.3565 36 1 0.8698 0.9327 4.6810 37 1 1.8278 -1.4455 6.0780 38 1 3.0920 1.2895 6.5594 39 1 3.8933 -0.0898 5.7692 40 1 4.4885 0.0747 8.1894 41 1 3.6315 -1.4406 7.8164 42 1 3.4692 1.9483 9.2056 43 1 1.6691 2.0703 8.9709 44 1 2.2687 -1.1811 10.7568 45 1 3.9077 -0.4326 10.5115 46 1 1.0524 -1.5644 8.4564 47 1 0.3357 -0.1253 9.2212 48 1 -0.2554 -0.2875 6.7995 49 1 0.6945 1.1752 7.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883740545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:30 Heat of formation + Delta-G solvation = -44.170027 kcal Electronic energy + Delta-G solvation = -26582.101146 eV Core-core repulsion = 22931.443342 eV Total energy + Delta-G solvation = -3650.657804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48562 -39.79393 -37.58378 -36.50158 -33.75851 -33.17984 -31.48642 -31.30580 -29.70426 -26.97178 -26.41134 -26.04670 -25.10960 -24.41476 -23.24080 -21.34101 -20.54955 -19.19550 -19.03440 -17.92533 -16.66421 -16.40306 -16.21559 -16.06857 -15.92791 -15.25063 -15.11039 -14.44883 -14.31978 -14.01186 -13.83694 -13.44804 -13.30086 -12.93522 -12.86985 -12.68888 -12.60000 -12.55297 -12.33722 -12.21034 -12.04944 -11.49268 -11.35045 -11.15815 -10.88189 -10.73019 -10.42820 -10.31560 -10.30417 -10.17375 -10.06796 -9.95309 -9.77582 -9.13532 -9.02982 -8.69116 -8.49078 -8.33980 -6.14990 -4.12134 2.96674 3.23212 3.30129 3.34503 3.37872 3.55071 3.77557 4.20893 4.34961 4.40638 4.59612 4.73207 4.76253 4.85080 4.93485 4.97393 5.07191 5.11920 5.15770 5.17586 5.37237 5.42435 5.51087 5.63436 5.69180 5.73336 5.75584 5.78680 5.80389 5.87852 6.03853 6.06898 6.08112 6.13950 6.34928 6.45381 6.53382 6.62179 6.63369 6.70709 6.83181 6.99659 7.20712 7.26988 7.43556 7.72903 8.33300 8.47356 8.90301 8.95810 9.48899 10.98125 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.038345 B = 0.002466 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.040748 B =11352.956006 C =11520.351488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.249 1.249 12 C 0.161 3.839 13 N -0.739 5.739 14 C 0.699 3.301 15 O -0.595 6.595 16 N -0.751 5.751 17 C 0.166 3.834 18 C -0.128 4.128 19 C -0.108 4.108 20 C -0.124 4.124 21 C 0.043 3.957 22 O -0.383 6.383 23 C 0.041 3.959 24 C -0.090 4.090 25 C -0.125 4.125 26 H 0.021 0.979 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.391 0.609 36 H 0.392 0.608 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 5.644 25.381 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.038 3.962 13 N -0.393 5.393 14 C 0.399 3.601 15 O -0.474 6.474 16 N -0.406 5.406 17 C 0.061 3.939 18 C -0.167 4.167 19 C -0.146 4.146 20 C -0.125 4.125 21 C -0.034 4.034 22 O -0.302 6.302 23 C -0.036 4.036 24 C -0.128 4.128 25 C -0.163 4.163 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.395 4.777 25.468 25.950 hybrid contribution -0.691 1.705 -0.608 1.937 sum -2.087 6.482 24.861 25.776 Atomic orbital electron populations 1.22285 0.97890 0.99813 0.99844 1.18725 0.92480 0.92248 0.93807 1.22348 1.01182 0.98348 0.98451 1.20720 1.34019 1.12315 0.87969 0.90515 1.24974 0.94704 0.97297 0.95795 1.69951 1.48210 1.35906 0.98719 0.87288 0.79307 0.85584 0.75942 1.21394 1.23442 1.17558 1.21359 0.98305 0.95420 0.81136 1.45509 1.55898 1.33080 1.04839 1.16052 0.80494 0.82961 0.80613 1.90896 1.42849 1.27633 1.85995 1.45222 1.57332 1.33216 1.04848 1.20707 0.93182 0.99811 0.80242 1.21941 0.97885 1.00355 0.96558 1.21510 0.97149 1.01901 0.94088 1.23354 0.97396 0.96086 0.95625 1.24012 1.01741 0.95597 0.82036 1.89692 1.81699 1.27143 1.31628 1.24004 0.99243 0.87518 0.92851 1.21211 0.94157 1.01188 0.96272 1.21810 0.98917 1.01324 0.94288 0.96030 0.92593 0.93412 0.92813 0.94116 0.95256 0.92566 0.92262 0.92154 0.77468 0.77516 0.89474 0.92012 0.90816 0.91343 0.90975 0.90175 0.89255 0.89193 0.90091 0.90785 0.90663 0.90810 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.15 0.28 -2.56 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -2.94 7.52 37.16 0.28 -2.66 16 4 C -0.51 -13.72 8.62 -34.44 -0.30 -14.02 16 5 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 6 C 0.07 2.08 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 8 Si 0.89 20.99 22.79 -169.99 -3.87 17.12 16 9 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 10 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.25 -5.36 4.65 56.52 0.26 -5.09 16 12 C 0.16 3.23 4.49 -4.04 -0.02 3.21 16 13 N -0.74 -12.00 5.01 -65.22 -0.33 -12.32 16 14 C 0.70 11.36 8.53 -86.92 -0.74 10.62 16 15 O -0.60 -12.13 16.01 5.29 0.08 -12.05 16 16 N -0.75 -8.61 5.08 -58.70 -0.30 -8.91 16 17 C 0.17 1.67 2.40 -67.96 -0.16 1.50 16 18 C -0.13 -1.22 5.43 -26.65 -0.14 -1.36 16 19 C -0.11 -0.82 5.10 -26.86 -0.14 -0.96 16 20 C -0.12 -0.86 0.79 -154.36 -0.12 -0.98 16 21 C 0.04 0.31 8.00 37.39 0.30 0.61 16 22 O -0.38 -3.61 12.36 -35.23 -0.44 -4.04 16 23 C 0.04 0.28 8.35 37.39 0.31 0.59 16 24 C -0.09 -0.61 5.05 -26.86 -0.14 -0.74 16 25 C -0.13 -0.90 5.32 -26.66 -0.14 -1.04 16 26 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 27 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 28 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 31 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.39 5.44 6.27 -40.82 -0.26 5.19 16 36 H 0.39 3.45 8.62 -40.82 -0.35 3.10 16 37 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 38 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 43 H 0.09 0.58 7.53 -51.93 -0.39 0.19 16 44 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 45 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.43 7.54 -51.93 -0.39 0.03 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -32.13 364.91 -7.92 -40.05 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.44 Total: 5.74 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -0.90 Total: -5.26 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.15 Total: -47.06 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.35 Total: -16.09 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -3.87 Total: 17.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.13 -7.92 -40.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.120 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds