Wall clock time and date at job start Fri Apr 10 2020 22:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47380 * 2 1 4 4 C 1.50698 * 109.47172 * 239.99922 * 2 1 3 5 5 H 1.08006 * 120.00032 * 241.34745 * 4 2 1 6 6 C 1.37873 * 120.00017 * 61.34846 * 4 2 1 7 7 N 1.31511 * 120.00034 * 193.97571 * 6 4 2 8 8 Si 1.86800 * 119.99881 * 13.97552 * 6 4 2 9 9 H 1.48498 * 109.47209 * 84.55064 * 8 6 4 10 10 H 1.48512 * 109.46843 * 204.55039 * 8 6 4 11 11 H 1.48495 * 109.47121 * 324.54501 * 8 6 4 12 12 C 1.53004 * 109.47091 * 119.99598 * 2 1 3 13 13 N 1.46497 * 109.47541 * 300.00051 * 12 2 1 14 14 C 1.34775 * 120.00109 * 179.97438 * 13 12 2 15 15 O 1.21587 * 119.99870 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00010 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00074 * 180.02562 * 16 14 13 18 18 C 1.52984 * 109.39527 * 84.75795 * 17 16 14 19 19 C 1.53166 * 109.41275 * 181.80504 * 18 17 16 20 20 C 1.52581 * 109.30796 * 302.43446 * 19 18 17 21 21 C 1.53553 * 113.66656 * 284.24604 * 20 19 18 22 22 O 1.44277 * 85.36749 * 223.40147 * 21 20 19 23 23 C 1.44272 * 93.41584 * 23.84889 * 22 21 20 24 24 C 1.52584 * 113.23038 * 55.93356 * 20 19 18 25 25 C 1.52974 * 109.43580 * 205.00063 * 17 16 14 26 26 H 1.09005 * 109.47288 * 309.36675 * 1 2 3 27 27 H 1.08997 * 109.47353 * 69.37024 * 1 2 3 28 28 H 1.09002 * 109.47445 * 189.36750 * 1 2 3 29 29 H 1.08993 * 109.47473 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47256 * 300.00600 * 3 2 1 31 31 H 1.09006 * 109.46954 * 59.99417 * 3 2 1 32 32 H 0.97006 * 120.00379 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47058 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.46983 * 60.00682 * 12 2 1 35 35 H 0.96998 * 119.99885 * 0.02562 * 13 12 2 36 36 H 0.97004 * 119.99915 * 359.97438 * 16 14 13 37 37 H 1.09005 * 109.43487 * 324.91118 * 17 16 14 38 38 H 1.08998 * 109.44986 * 61.84397 * 18 17 16 39 39 H 1.08999 * 109.51234 * 301.80600 * 18 17 16 40 40 H 1.09001 * 109.50307 * 182.47270 * 19 18 17 41 41 H 1.08999 * 109.50195 * 62.39556 * 19 18 17 42 42 H 1.09002 * 113.88753 * 337.51083 * 21 20 19 43 43 H 1.08999 * 113.88363 * 109.29118 * 21 20 19 44 44 H 1.08996 * 113.88781 * 222.04481 * 23 22 21 45 45 H 1.08999 * 114.00937 * 90.27042 * 23 22 21 46 46 H 1.08998 * 109.50034 * 63.98328 * 24 20 19 47 47 H 1.08997 * 109.50602 * 184.06893 * 24 20 19 48 48 H 1.09005 * 109.48220 * 58.18928 * 25 17 16 49 49 H 1.09003 * 109.49245 * 298.16755 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5459 8 14 1.0275 1.5006 -2.6683 9 1 2.1416 2.4816 -2.7083 10 1 0.2469 1.5864 -3.9288 11 1 0.1417 1.8042 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6696 15 8 2.5759 -1.4799 3.7811 16 7 1.4272 0.1438 4.7700 17 6 1.7811 -0.3567 6.1006 18 6 3.1460 0.2021 6.5071 19 6 3.5369 -0.3565 7.8786 20 6 2.4581 0.0032 8.8959 21 6 2.4992 1.4710 9.3449 22 8 2.2905 0.9486 10.6735 23 6 2.8343 -0.3463 10.3431 24 6 1.0666 -0.4751 8.4921 25 6 0.7204 0.0864 7.1098 26 1 -0.3634 0.6519 0.7945 27 1 -0.3634 0.3621 -0.9617 28 1 -0.3634 -1.0140 0.1673 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6973 -0.6301 -4.4268 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7489 1.2493 35 1 0.9937 0.7578 2.3565 36 1 0.8698 0.9327 4.6810 37 1 1.8278 -1.4455 6.0780 38 1 3.0920 1.2895 6.5594 39 1 3.8933 -0.0898 5.7692 40 1 4.4885 0.0747 8.1894 41 1 3.6315 -1.4406 7.8164 42 1 3.4692 1.9483 9.2056 43 1 1.6691 2.0703 8.9709 44 1 2.2687 -1.1811 10.7568 45 1 3.9077 -0.4326 10.5115 46 1 1.0524 -1.5644 8.4564 47 1 0.3357 -0.1253 9.2212 48 1 -0.2554 -0.2875 6.7995 49 1 0.6945 1.1752 7.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883740545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:29 Heat of formation + Delta-G solvation = -68.290314 kcal Electronic energy + Delta-G solvation = -26583.147080 eV Core-core repulsion = 22931.443342 eV Total energy + Delta-G solvation = -3651.703738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09574 -41.04052 -38.81217 -37.78424 -35.03779 -34.61265 -33.32236 -31.93317 -30.54581 -28.01434 -27.57222 -27.42142 -26.89129 -25.46196 -23.88900 -22.27533 -21.68310 -20.90159 -19.86482 -19.03396 -18.03246 -17.48993 -17.15916 -17.01751 -16.88144 -16.64555 -16.34196 -15.65936 -15.38601 -15.21003 -14.90895 -14.69002 -14.48174 -14.37727 -14.12816 -13.98576 -13.74276 -13.59680 -13.31024 -13.23902 -12.99257 -12.86954 -12.38195 -12.13310 -12.10195 -11.94818 -11.87399 -11.75138 -11.55812 -11.43199 -11.17662 -11.03927 -10.91612 -10.60846 -10.48873 -10.38463 -10.24239 -9.65679 -8.29203 -6.30979 1.37408 1.38732 1.51995 1.80302 2.24384 2.35756 2.81473 3.06747 3.18456 3.45905 3.63154 3.78290 4.09349 4.12344 4.17530 4.18632 4.35230 4.35803 4.39853 4.43004 4.48051 4.51795 4.62698 4.73297 4.76982 4.83243 4.85029 4.87432 4.93988 4.95726 4.97802 5.07955 5.13055 5.14417 5.19657 5.20430 5.21588 5.26664 5.38912 5.43493 5.46361 5.59059 5.66120 5.74881 5.81586 6.12438 6.32490 6.73461 7.22175 7.33813 7.69122 8.88104 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.038345 B = 0.002466 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.040748 B =11352.956006 C =11520.351488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.518 4.518 5 H 0.026 0.974 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.202 1.202 12 C 0.178 3.822 13 N -0.727 5.727 14 C 0.697 3.303 15 O -0.641 6.641 16 N -0.729 5.729 17 C 0.164 3.836 18 C -0.123 4.123 19 C -0.103 4.103 20 C -0.118 4.118 21 C 0.042 3.958 22 O -0.408 6.408 23 C 0.039 3.961 24 C -0.089 4.089 25 C -0.115 4.115 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.264 0.736 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.408 0.592 36 H 0.411 0.589 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 8.884 28.055 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.202 4.202 4 C -0.556 4.556 5 H 0.044 0.956 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.126 1.126 12 C 0.053 3.947 13 N -0.383 5.383 14 C 0.397 3.603 15 O -0.523 6.523 16 N -0.385 5.385 17 C 0.059 3.941 18 C -0.162 4.162 19 C -0.141 4.141 20 C -0.118 4.118 21 C -0.035 4.035 22 O -0.328 6.328 23 C -0.038 4.038 24 C -0.127 4.127 25 C -0.153 4.153 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.245 0.755 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.312 8.067 28.214 29.532 hybrid contribution -0.015 0.552 -1.370 1.477 sum -3.328 8.619 26.844 28.390 Atomic orbital electron populations 1.22205 0.95991 1.00594 1.00890 1.18647 0.93826 0.93129 0.91652 1.22278 1.00914 0.96751 1.00285 1.21040 1.32891 1.11066 0.90641 0.95568 1.25889 0.95427 1.01749 0.95177 1.70119 1.50758 1.38359 0.99420 0.86307 0.79400 0.79739 0.76973 1.20929 1.24582 1.12552 1.20836 0.96882 0.94497 0.82448 1.45103 1.56121 1.33326 1.03731 1.16208 0.80137 0.82615 0.81370 1.90877 1.44911 1.29887 1.86659 1.45049 1.56353 1.33080 1.03984 1.20839 0.94796 0.98397 0.80084 1.21862 0.96462 1.01269 0.96618 1.21463 0.98010 1.01360 0.93301 1.23276 0.97062 0.96264 0.95235 1.24156 1.02608 0.95620 0.81070 1.89671 1.82072 1.28203 1.32834 1.24147 0.99933 0.87073 0.92633 1.21209 0.94216 1.01165 0.96061 1.21744 0.97787 1.02449 0.93274 0.91421 0.93639 0.94213 0.93626 0.94692 0.90656 0.92691 0.94472 0.94669 0.75490 0.75288 0.92233 0.90418 0.94175 0.90453 0.91822 0.89475 0.88203 0.88382 0.89229 0.90971 0.89931 0.90283 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 7.53 71.98 0.54 -4.65 16 2 C 0.03 1.21 0.50 -52.93 -0.03 1.18 16 3 C -0.15 -5.34 7.52 71.98 0.54 -4.80 16 4 C -0.52 -28.67 8.62 25.60 0.22 -28.45 16 5 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 6 C 0.01 0.84 5.32 84.65 0.45 1.29 16 7 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 8 Si 0.95 42.41 22.79 68.60 1.56 43.98 16 9 H -0.28 -12.39 7.10 99.48 0.71 -11.68 16 10 H -0.32 -14.66 7.11 99.48 0.71 -13.95 16 11 H -0.20 -7.53 4.65 99.48 0.46 -7.07 16 12 C 0.18 7.18 4.49 86.38 0.39 7.57 16 13 N -0.73 -21.99 5.01 -478.52 -2.40 -24.39 16 14 C 0.70 21.79 8.53 179.05 1.53 23.32 16 15 O -0.64 -26.59 16.01 -3.99 -0.06 -26.66 16 16 N -0.73 -14.88 5.08 -457.89 -2.32 -17.21 16 17 C 0.16 3.01 2.40 44.98 0.11 3.11 16 18 C -0.12 -2.16 5.43 30.64 0.17 -1.99 16 19 C -0.10 -1.42 5.10 30.51 0.16 -1.26 16 20 C -0.12 -1.35 0.79 -52.09 -0.04 -1.39 16 21 C 0.04 0.48 8.00 72.13 0.58 1.06 16 22 O -0.41 -6.78 12.36 -148.98 -1.84 -8.62 16 23 C 0.04 0.46 8.35 72.13 0.60 1.06 16 24 C -0.09 -0.96 5.05 30.51 0.15 -0.81 16 25 C -0.11 -1.28 5.32 30.64 0.16 -1.12 16 26 H 0.07 1.90 7.13 -2.38 -0.02 1.88 16 27 H 0.04 1.79 4.30 -2.39 -0.01 1.78 16 28 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.34 2.25 -2.39 -0.01 1.33 16 31 H 0.07 2.07 6.86 -2.38 -0.02 2.05 16 32 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 33 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 34 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 9.47 6.27 -92.71 -0.58 8.89 16 36 H 0.41 5.47 8.62 -92.71 -0.80 4.68 16 37 H 0.06 1.46 7.58 -2.38 -0.02 1.44 16 38 H 0.08 1.11 8.03 -2.39 -0.02 1.09 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.88 8.05 -2.39 -0.02 0.86 16 43 H 0.10 0.93 7.53 -2.39 -0.02 0.91 16 44 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 45 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 0.84 8.07 -2.39 -0.02 0.82 16 48 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.09 0.69 7.54 -2.39 -0.02 0.68 16 Total: -1.00 -74.78 364.91 0.09 -74.68 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.67 Total: 22.76 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.53 Total: -5.90 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -4.42 Total: -100.25 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.91 Total: -35.28 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.56 Total: 43.98 kcal Total: -74.78 0.09 -74.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.394 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds