Wall clock time and date at job start Fri Apr 10 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47221 * 239.99702 * 2 1 3 5 5 H 1.08002 * 119.99838 * 241.34586 * 4 2 1 6 6 C 1.37877 * 120.00076 * 61.34973 * 4 2 1 7 7 N 1.31512 * 120.00088 * 193.97747 * 6 4 2 8 8 Si 1.86808 * 119.99940 * 13.97009 * 6 4 2 9 9 H 1.48506 * 109.46667 * 84.55477 * 8 6 4 10 10 H 1.48500 * 109.46986 * 204.54747 * 8 6 4 11 11 H 1.48492 * 109.47205 * 324.55242 * 8 6 4 12 12 C 1.52998 * 109.47308 * 119.99661 * 2 1 3 13 13 N 1.46508 * 109.46838 * 300.00455 * 12 2 1 14 14 C 1.34779 * 119.99491 * 179.97438 * 13 12 2 15 15 O 1.21584 * 120.00587 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99610 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99954 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47254 * 180.02562 * 17 16 14 19 19 H 1.09004 * 109.84361 * 59.05748 * 18 17 16 20 20 C 1.54168 * 109.85756 * 180.02562 * 18 17 16 21 21 C 1.55007 * 104.26929 * 121.24456 * 20 18 17 22 22 C 1.53908 * 101.91652 * 19.79004 * 21 20 18 23 23 C 1.52636 * 115.54966 * 195.00745 * 22 21 20 24 24 C 1.53992 * 86.73411 * 217.58211 * 23 22 21 25 25 C 1.52643 * 115.54074 * 93.99269 * 22 21 20 26 26 O 1.43097 * 105.11121 * 324.51284 * 22 21 20 27 27 H 1.09000 * 109.47383 * 309.37142 * 1 2 3 28 28 H 1.08997 * 109.46918 * 69.37201 * 1 2 3 29 29 H 1.08993 * 109.46788 * 189.36652 * 1 2 3 30 30 H 1.08998 * 109.46917 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46781 * 299.99427 * 3 2 1 32 32 H 1.08998 * 109.47435 * 59.99844 * 3 2 1 33 33 H 0.96999 * 119.99945 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47582 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.46941 * 59.99835 * 12 2 1 36 36 H 0.97000 * 119.99918 * 359.71884 * 13 12 2 37 37 H 0.97002 * 119.99864 * 0.02562 * 16 14 13 38 38 H 1.08991 * 109.47835 * 300.00703 * 17 16 14 39 39 H 1.08999 * 109.46995 * 60.01145 * 17 16 14 40 40 H 1.09000 * 110.46882 * 239.94283 * 20 18 17 41 41 H 1.08995 * 110.47337 * 2.41516 * 20 18 17 42 42 H 1.08992 * 110.94136 * 137.94694 * 21 20 18 43 43 H 1.08994 * 110.93640 * 261.63802 * 21 20 18 44 44 H 1.08991 * 113.67185 * 332.04068 * 23 22 21 45 45 H 1.09003 * 113.66920 * 103.12697 * 23 22 21 46 46 H 1.09011 * 113.57830 * 269.98636 * 24 23 22 47 47 H 1.08994 * 113.65296 * 139.20698 * 24 23 22 48 48 H 1.09003 * 113.66655 * 256.88764 * 25 22 21 49 49 H 1.09000 * 113.67273 * 27.87088 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6353 -1.6011 -1.1314 6 6 1.7225 -0.2235 -2.4825 7 7 1.9159 -0.9727 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1417 2.4816 -2.7085 10 1 0.2471 1.5863 -3.9289 11 1 0.1418 1.8042 -1.5160 12 6 2.0401 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8769 -0.4912 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4279 0.1445 4.7700 17 6 1.7809 -0.3566 6.1005 18 6 1.1478 0.5391 7.1673 19 1 0.0645 0.5488 7.0469 20 6 1.5144 0.0198 8.5719 21 6 2.2445 1.2121 9.2414 22 6 1.7710 2.3978 8.3820 23 6 2.5730 3.6869 8.5399 24 6 1.2325 4.4332 8.4072 25 6 0.5506 3.1474 8.9099 26 8 1.6666 1.8772 7.0532 27 1 -0.3634 0.6519 0.7944 28 1 -0.3633 0.3620 -0.9618 29 1 -0.3633 -1.0139 0.1672 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6982 -0.6299 -4.4268 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9973 0.7605 2.3563 37 1 0.8705 0.9333 4.6809 38 1 1.4106 -1.3752 6.2153 39 1 2.8648 -0.3489 6.2159 40 1 0.6143 -0.2381 9.1299 41 1 2.1766 -0.8428 8.4986 42 1 1.9275 1.3308 10.2775 43 1 3.3259 1.0920 9.1777 44 1 3.0389 3.7952 9.5192 45 1 3.2627 3.8767 7.7175 46 1 0.9761 4.6895 7.3791 47 1 1.1318 5.2761 9.0907 48 1 -0.3726 2.9067 8.3826 49 1 0.4440 3.1018 9.9937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883740805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:32 Heat of formation + Delta-G solvation = -44.207388 kcal Electronic energy + Delta-G solvation = -26367.534515 eV Core-core repulsion = 22716.875091 eV Total energy + Delta-G solvation = -3650.659424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98420 -39.57028 -37.19683 -36.58867 -34.19936 -33.21416 -32.56968 -31.43337 -29.32457 -26.39568 -26.31091 -25.92791 -25.06468 -24.32781 -22.55858 -21.58924 -20.50768 -19.62003 -19.12405 -18.05503 -16.79576 -16.24578 -16.17605 -16.04601 -15.51539 -15.28694 -15.04220 -14.87203 -14.06511 -13.84003 -13.74457 -13.46788 -13.21410 -12.90434 -12.78243 -12.63792 -12.52995 -12.47926 -12.16612 -12.05357 -12.00044 -11.84053 -11.43403 -11.23447 -11.14653 -10.80890 -10.50946 -10.38400 -10.26640 -10.13153 -10.02021 -9.83687 -9.77949 -9.09298 -8.98103 -8.64781 -8.44943 -8.26416 -6.11560 -4.08433 2.99954 3.26889 3.30666 3.34119 3.41031 3.63544 4.03065 4.13951 4.27726 4.38636 4.41287 4.51442 4.54068 4.68823 4.79338 4.83705 5.08209 5.10503 5.19460 5.24583 5.34800 5.38848 5.47650 5.53236 5.56712 5.57103 5.68646 5.78986 5.83841 5.89843 5.93191 6.10036 6.13261 6.40367 6.50465 6.57007 6.59983 6.66831 6.73751 6.76221 6.88515 7.05503 7.25947 7.33068 7.48304 7.76936 8.39487 8.51875 8.94040 9.01933 9.52578 11.01611 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.002670 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.357703 B =10482.632960 C =11264.424433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.147 4.147 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.249 1.249 12 C 0.161 3.839 13 N -0.738 5.738 14 C 0.699 3.301 15 O -0.599 6.599 16 N -0.749 5.749 17 C 0.145 3.855 18 C 0.066 3.934 19 H 0.076 0.924 20 C -0.147 4.147 21 C -0.139 4.139 22 C 0.082 3.918 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.155 4.155 26 O -0.341 6.341 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.392 0.608 37 H 0.396 0.604 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 9.353 28.220 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.175 1.175 12 C 0.038 3.962 13 N -0.393 5.393 14 C 0.399 3.601 15 O -0.477 6.477 16 N -0.406 5.406 17 C 0.020 3.980 18 C 0.008 3.992 19 H 0.094 0.906 20 C -0.185 4.185 21 C -0.177 4.177 22 C 0.042 3.958 23 C -0.166 4.166 24 C -0.174 4.174 25 C -0.193 4.193 26 O -0.260 6.260 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.316 8.476 27.887 29.335 hybrid contribution -0.915 1.581 -0.234 1.842 sum -4.231 10.057 27.653 29.728 Atomic orbital electron populations 1.22282 0.97891 0.99811 0.99835 1.18729 0.92488 0.92268 0.93794 1.22347 1.01202 0.98330 0.98462 1.20730 1.33947 1.12297 0.87980 0.90505 1.24971 0.94701 0.97294 0.95784 1.69953 1.48324 1.35905 0.98701 0.87290 0.79332 0.85609 0.75914 1.21386 1.23472 1.17525 1.21363 0.98317 0.95409 0.81134 1.45483 1.56130 1.32898 1.04767 1.16020 0.80474 0.82985 0.80623 1.90892 1.42957 1.27808 1.86089 1.44983 1.57623 1.33303 1.04644 1.21333 1.00483 0.96249 0.79974 1.23086 0.98125 0.82953 0.94989 0.90639 1.22905 1.01605 0.99315 0.94698 1.22913 1.01319 0.93926 0.99504 1.22650 0.96484 0.93366 0.83293 1.22877 0.97298 0.93642 1.02807 1.22853 0.95943 0.96604 1.01965 1.23295 0.98082 0.96767 1.01131 1.88742 1.85159 1.27237 1.24842 0.95999 0.92610 0.93416 0.92803 0.94144 0.95188 0.92594 0.92268 0.92133 0.77417 0.77029 0.90575 0.91187 0.90223 0.89771 0.90070 0.90152 0.88860 0.90287 0.89753 0.91335 0.90851 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 7.53 37.16 0.28 -2.65 16 2 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16 3 C -0.15 -3.05 7.52 37.16 0.28 -2.78 16 4 C -0.51 -13.98 8.62 -34.44 -0.30 -14.28 16 5 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 6 C 0.07 2.11 5.32 -17.82 -0.09 2.02 16 7 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 8 Si 0.89 21.39 22.79 -169.99 -3.87 17.52 16 9 H -0.29 -6.90 7.10 56.52 0.40 -6.49 16 10 H -0.31 -7.55 7.11 56.52 0.40 -7.14 16 11 H -0.25 -5.48 4.65 56.52 0.26 -5.21 16 12 C 0.16 3.37 4.49 -4.04 -0.02 3.35 16 13 N -0.74 -12.88 5.01 -65.22 -0.33 -13.21 16 14 C 0.70 12.40 8.57 -86.91 -0.74 11.66 16 15 O -0.60 -13.03 16.34 5.29 0.09 -12.94 16 16 N -0.75 -9.98 5.48 -65.23 -0.36 -10.33 16 17 C 0.14 1.65 5.15 -4.04 -0.02 1.63 16 18 C 0.07 0.58 3.51 -26.12 -0.09 0.49 16 19 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 20 C -0.15 -0.97 6.65 -25.06 -0.17 -1.14 16 21 C -0.14 -0.89 6.48 -25.20 -0.16 -1.05 16 22 C 0.08 0.64 1.12 -90.53 -0.10 0.53 16 23 C -0.13 -0.91 7.64 -26.40 -0.20 -1.11 16 24 C -0.14 -0.92 8.09 -25.72 -0.21 -1.13 16 25 C -0.16 -1.01 7.63 -26.40 -0.20 -1.21 16 26 O -0.34 -3.48 10.85 -35.23 -0.38 -3.87 16 27 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 28 H 0.06 1.23 4.30 -51.93 -0.22 1.00 16 29 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 32 H 0.03 0.52 6.86 -51.93 -0.36 0.17 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.39 5.95 6.27 -40.82 -0.26 5.70 16 37 H 0.40 4.47 8.43 -40.82 -0.34 4.12 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.54 7.70 -51.93 -0.40 0.14 16 42 H 0.08 0.39 7.96 -51.93 -0.41 -0.02 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.45 8.01 -51.93 -0.42 0.03 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -32.73 371.28 -8.82 -41.55 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.51 Total: 7.00 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.83 Total: -5.11 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.09 Total: -49.74 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.30 Total: -16.81 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -3.87 Total: 17.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.73 -8.82 -41.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.661 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds