Wall clock time and date at job start Fri Apr 10 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47221 * 239.99702 * 2 1 3 5 5 H 1.08002 * 119.99838 * 241.34586 * 4 2 1 6 6 C 1.37877 * 120.00076 * 61.34973 * 4 2 1 7 7 N 1.31512 * 120.00088 * 193.97747 * 6 4 2 8 8 Si 1.86808 * 119.99940 * 13.97009 * 6 4 2 9 9 H 1.48506 * 109.46667 * 84.55477 * 8 6 4 10 10 H 1.48500 * 109.46986 * 204.54747 * 8 6 4 11 11 H 1.48492 * 109.47205 * 324.55242 * 8 6 4 12 12 C 1.52998 * 109.47308 * 119.99661 * 2 1 3 13 13 N 1.46508 * 109.46838 * 300.00455 * 12 2 1 14 14 C 1.34779 * 119.99491 * 179.97438 * 13 12 2 15 15 O 1.21584 * 120.00587 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99610 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99954 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47254 * 180.02562 * 17 16 14 19 19 H 1.09004 * 109.84361 * 59.05748 * 18 17 16 20 20 C 1.54168 * 109.85756 * 180.02562 * 18 17 16 21 21 C 1.55007 * 104.26929 * 121.24456 * 20 18 17 22 22 C 1.53908 * 101.91652 * 19.79004 * 21 20 18 23 23 C 1.52636 * 115.54966 * 195.00745 * 22 21 20 24 24 C 1.53992 * 86.73411 * 217.58211 * 23 22 21 25 25 C 1.52643 * 115.54074 * 93.99269 * 22 21 20 26 26 O 1.43097 * 105.11121 * 324.51284 * 22 21 20 27 27 H 1.09000 * 109.47383 * 309.37142 * 1 2 3 28 28 H 1.08997 * 109.46918 * 69.37201 * 1 2 3 29 29 H 1.08993 * 109.46788 * 189.36652 * 1 2 3 30 30 H 1.08998 * 109.46917 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46781 * 299.99427 * 3 2 1 32 32 H 1.08998 * 109.47435 * 59.99844 * 3 2 1 33 33 H 0.96999 * 119.99945 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47582 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.46941 * 59.99835 * 12 2 1 36 36 H 0.97000 * 119.99918 * 359.71884 * 13 12 2 37 37 H 0.97002 * 119.99864 * 0.02562 * 16 14 13 38 38 H 1.08991 * 109.47835 * 300.00703 * 17 16 14 39 39 H 1.08999 * 109.46995 * 60.01145 * 17 16 14 40 40 H 1.09000 * 110.46882 * 239.94283 * 20 18 17 41 41 H 1.08995 * 110.47337 * 2.41516 * 20 18 17 42 42 H 1.08992 * 110.94136 * 137.94694 * 21 20 18 43 43 H 1.08994 * 110.93640 * 261.63802 * 21 20 18 44 44 H 1.08991 * 113.67185 * 332.04068 * 23 22 21 45 45 H 1.09003 * 113.66920 * 103.12697 * 23 22 21 46 46 H 1.09011 * 113.57830 * 269.98636 * 24 23 22 47 47 H 1.08994 * 113.65296 * 139.20698 * 24 23 22 48 48 H 1.09003 * 113.66655 * 256.88764 * 25 22 21 49 49 H 1.09000 * 113.67273 * 27.87088 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6353 -1.6011 -1.1314 6 6 1.7225 -0.2235 -2.4825 7 7 1.9159 -0.9727 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1417 2.4816 -2.7085 10 1 0.2471 1.5863 -3.9289 11 1 0.1418 1.8042 -1.5160 12 6 2.0401 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8769 -0.4912 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4279 0.1445 4.7700 17 6 1.7809 -0.3566 6.1005 18 6 1.1478 0.5391 7.1673 19 1 0.0645 0.5488 7.0469 20 6 1.5144 0.0198 8.5719 21 6 2.2445 1.2121 9.2414 22 6 1.7710 2.3978 8.3820 23 6 2.5730 3.6869 8.5399 24 6 1.2325 4.4332 8.4072 25 6 0.5506 3.1474 8.9099 26 8 1.6666 1.8772 7.0532 27 1 -0.3634 0.6519 0.7944 28 1 -0.3633 0.3620 -0.9618 29 1 -0.3633 -1.0139 0.1672 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6982 -0.6299 -4.4268 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9973 0.7605 2.3563 37 1 0.8705 0.9333 4.6809 38 1 1.4106 -1.3752 6.2153 39 1 2.8648 -0.3489 6.2159 40 1 0.6143 -0.2381 9.1299 41 1 2.1766 -0.8428 8.4986 42 1 1.9275 1.3308 10.2775 43 1 3.3259 1.0920 9.1777 44 1 3.0389 3.7952 9.5192 45 1 3.2627 3.8767 7.7175 46 1 0.9761 4.6895 7.3791 47 1 1.1318 5.2761 9.0907 48 1 -0.3726 2.9067 8.3826 49 1 0.4440 3.1018 9.9937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883740805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:32 Heat of formation + Delta-G solvation = -68.052998 kcal Electronic energy + Delta-G solvation = -26368.568538 eV Core-core repulsion = 22716.875091 eV Total energy + Delta-G solvation = -3651.693447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61767 -40.95536 -38.61001 -37.57856 -35.35889 -34.95513 -33.45411 -33.10633 -30.19966 -28.02694 -27.53487 -26.96835 -26.65582 -25.42354 -23.19296 -22.32485 -21.84006 -20.92472 -20.15902 -19.46011 -18.04339 -17.63003 -17.22677 -17.10385 -16.76340 -16.47988 -16.14607 -15.83542 -15.41812 -15.08128 -14.92242 -14.76755 -14.55195 -14.36198 -13.98330 -13.77385 -13.75093 -13.68539 -13.31749 -13.10480 -12.90938 -12.61570 -12.47214 -12.38539 -12.13766 -11.95253 -11.92586 -11.76194 -11.67988 -11.36831 -11.31725 -11.04730 -11.02776 -10.61367 -10.44008 -10.39781 -10.33802 -9.69313 -8.29701 -6.31356 1.37247 1.38277 1.51355 1.76559 2.19543 2.35267 2.65454 3.06217 3.38580 3.48754 3.64319 3.70224 3.90962 3.97311 4.00274 4.07861 4.15708 4.26053 4.34282 4.41683 4.43242 4.56354 4.66319 4.75043 4.81257 4.83486 4.86200 4.87135 4.88099 4.95307 4.97410 5.03727 5.06659 5.07447 5.14985 5.18732 5.19172 5.34324 5.43247 5.43990 5.50380 5.56610 5.73362 5.80210 6.05046 6.10568 6.31951 6.72776 7.15284 7.33308 7.62678 8.87626 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.002670 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.357703 B =10482.632960 C =11264.424433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.518 4.518 5 H 0.027 0.973 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.282 1.282 10 H -0.314 1.314 11 H -0.204 1.204 12 C 0.177 3.823 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.643 6.643 16 N -0.729 5.729 17 C 0.142 3.858 18 C 0.073 3.927 19 H 0.089 0.911 20 C -0.145 4.145 21 C -0.136 4.136 22 C 0.070 3.930 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.147 4.147 26 O -0.366 6.366 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.407 0.593 37 H 0.410 0.590 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 12.084 31.388 34.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.556 4.556 5 H 0.046 0.954 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.775 3.225 9 H -0.210 1.210 10 H -0.244 1.244 11 H -0.127 1.127 12 C 0.052 3.948 13 N -0.382 5.382 14 C 0.397 3.603 15 O -0.525 6.525 16 N -0.386 5.386 17 C 0.018 3.982 18 C 0.015 3.985 19 H 0.107 0.893 20 C -0.183 4.183 21 C -0.174 4.174 22 C 0.031 3.969 23 C -0.169 4.169 24 C -0.175 4.175 25 C -0.184 4.184 26 O -0.286 6.286 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.244 0.756 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.087 0.913 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.405 11.257 31.123 33.535 hybrid contribution -0.183 0.627 -1.160 1.331 sum -5.588 11.884 29.964 32.715 Atomic orbital electron populations 1.22203 0.95951 1.00644 1.00863 1.18650 0.93873 0.93036 0.91676 1.22285 1.00918 0.96870 1.00196 1.21030 1.32937 1.11110 0.90572 0.95421 1.25864 0.95384 1.01668 0.95160 1.70113 1.50744 1.38311 0.99412 0.86316 0.79408 0.79816 0.76970 1.20965 1.24389 1.12747 1.20881 0.96926 0.94625 0.82324 1.45105 1.56270 1.33117 1.03724 1.16176 0.80155 0.82658 0.81361 1.90869 1.44968 1.29939 1.86738 1.44857 1.56568 1.33005 1.04133 1.21492 0.99778 0.97292 0.79686 1.23073 0.98317 0.82161 0.94960 0.89335 1.22936 1.02558 0.99291 0.93519 1.22929 1.00915 0.93096 1.00433 1.22883 0.97508 0.93985 0.82572 1.22955 0.97158 0.93619 1.03123 1.22844 0.95783 0.97396 1.01518 1.23288 0.97146 0.95787 1.02186 1.88705 1.85463 1.27783 1.26640 0.91628 0.93547 0.94047 0.93626 0.94591 0.90948 0.92644 0.94442 0.94328 0.75565 0.75395 0.90421 0.92948 0.88208 0.89885 0.87903 0.90864 0.87019 0.92116 0.91223 0.90013 0.91291 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 7.53 71.98 0.54 -4.84 16 2 C 0.03 1.26 0.50 -52.93 -0.03 1.23 16 3 C -0.15 -5.64 7.52 71.98 0.54 -5.09 16 4 C -0.52 -29.21 8.62 25.60 0.22 -28.99 16 5 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 6 C 0.02 0.95 5.32 84.66 0.45 1.40 16 7 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 8 Si 0.95 43.29 22.79 68.60 1.56 44.85 16 9 H -0.28 -12.70 7.10 99.48 0.71 -11.99 16 10 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 11 H -0.20 -7.86 4.65 99.48 0.46 -7.40 16 12 C 0.18 7.45 4.49 86.38 0.39 7.84 16 13 N -0.73 -23.98 5.01 -478.52 -2.40 -26.38 16 14 C 0.70 24.00 8.57 179.05 1.53 25.53 16 15 O -0.64 -28.25 16.34 -3.98 -0.07 -28.32 16 16 N -0.73 -18.10 5.48 -478.55 -2.62 -20.72 16 17 C 0.14 3.07 5.15 86.38 0.44 3.51 16 18 C 0.07 1.10 3.51 30.99 0.11 1.21 16 19 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 20 C -0.14 -1.54 6.65 31.68 0.21 -1.33 16 21 C -0.14 -1.38 6.48 31.59 0.20 -1.17 16 22 C 0.07 0.92 1.12 -10.74 -0.01 0.91 16 23 C -0.13 -1.62 7.64 30.81 0.24 -1.38 16 24 C -0.14 -1.57 8.09 31.25 0.25 -1.32 16 25 C -0.15 -1.47 7.63 30.81 0.24 -1.23 16 26 O -0.37 -6.81 10.85 -148.98 -1.62 -8.43 16 27 H 0.06 1.96 7.13 -2.39 -0.02 1.94 16 28 H 0.05 1.88 4.30 -2.39 -0.01 1.87 16 29 H 0.04 1.63 8.12 -2.39 -0.02 1.61 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.43 2.25 -2.39 -0.01 1.43 16 32 H 0.07 2.18 6.86 -2.39 -0.02 2.16 16 33 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 10.78 6.27 -92.71 -0.58 10.20 16 37 H 0.41 8.06 8.43 -92.71 -0.78 7.28 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.91 7.70 -2.39 -0.02 0.89 16 42 H 0.10 0.60 7.96 -2.39 -0.02 0.58 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.11 0.66 8.01 -2.39 -0.02 0.64 16 Total: -1.00 -74.92 371.28 -0.17 -75.08 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.66 Total: 26.81 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.33 Total: -3.73 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -4.72 Total: -106.28 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.68 Total: -36.74 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.56 Total: 44.85 kcal Total: -74.92 -0.17 -75.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.031 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds