Wall clock time and date at job start Fri Apr 10 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47331 * 2 1 4 4 C 1.50697 * 109.46731 * 119.99996 * 2 1 3 5 5 H 1.08001 * 120.00556 * 122.07762 * 4 2 1 6 6 C 1.37878 * 120.00333 * 302.34565 * 4 2 1 7 7 N 1.31519 * 119.99805 * 353.19399 * 6 4 2 8 8 Si 1.86803 * 120.00590 * 173.19182 * 6 4 2 9 9 H 1.48507 * 109.46744 * 94.99013 * 8 6 4 10 10 H 1.48496 * 109.47193 * 214.99053 * 8 6 4 11 11 H 1.48497 * 109.46698 * 334.99290 * 8 6 4 12 12 C 1.53003 * 109.47121 * 239.99515 * 2 1 3 13 13 N 1.46500 * 109.46780 * 60.00529 * 12 2 1 14 14 C 1.34773 * 119.99662 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99807 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00258 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47561 * 180.02562 * 17 16 14 19 19 H 1.09005 * 110.29614 * 305.70442 * 18 17 16 20 20 C 1.54539 * 110.33649 * 183.55190 * 18 17 16 21 21 C 1.54719 * 104.07450 * 217.44631 * 20 18 17 22 22 C 1.53562 * 103.75097 * 0.69999 * 21 20 18 23 23 C 1.52810 * 115.45768 * 253.20494 * 22 21 20 24 24 C 1.53966 * 86.78746 * 217.65661 * 23 22 21 25 25 C 1.52799 * 115.48657 * 152.49424 * 22 21 20 26 26 O 1.43448 * 106.19802 * 22.75078 * 22 21 20 27 27 H 1.09001 * 109.46903 * 300.00334 * 1 2 3 28 28 H 1.09001 * 109.46580 * 59.99956 * 1 2 3 29 29 H 1.08995 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47284 * 174.13051 * 3 2 1 31 31 H 1.09003 * 109.47265 * 294.13075 * 3 2 1 32 32 H 1.09000 * 109.47286 * 54.12771 * 3 2 1 33 33 H 0.96999 * 120.00151 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47033 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47377 * 300.00119 * 12 2 1 36 36 H 0.96999 * 120.00277 * 359.97438 * 13 12 2 37 37 H 0.96999 * 120.00132 * 0.02562 * 16 14 13 38 38 H 1.08999 * 109.47184 * 300.00184 * 17 16 14 39 39 H 1.09007 * 109.46778 * 60.00077 * 17 16 14 40 40 H 1.09001 * 110.50735 * 336.09974 * 20 18 17 41 41 H 1.09000 * 110.51158 * 98.66569 * 20 18 17 42 42 H 1.09000 * 110.56653 * 119.26085 * 21 20 18 43 43 H 1.08994 * 110.57462 * 241.97996 * 21 20 18 44 44 H 1.08996 * 113.66719 * 332.12692 * 23 22 21 45 45 H 1.08994 * 113.66542 * 103.18884 * 23 22 21 46 46 H 1.08999 * 113.58236 * 270.12653 * 24 23 22 47 47 H 1.08996 * 113.58463 * 139.30542 * 24 23 22 48 48 H 1.08997 * 113.66094 * 256.79042 * 25 22 21 49 49 H 1.09000 * 113.66183 * 27.84349 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6805 -1.5686 1.1319 6 6 1.6597 -0.2683 2.4822 7 7 0.9778 0.8492 2.6088 8 14 2.1233 -1.2564 3.9982 9 1 3.3833 -0.7198 4.5725 10 1 1.0374 -1.1553 5.0061 11 1 2.3178 -2.6794 3.6210 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8778 -0.4910 -3.6694 15 8 2.5775 -1.4790 -3.7809 16 7 1.4282 0.1441 -4.7699 17 6 1.7830 -0.3558 -6.1005 18 6 1.1497 0.5395 -7.1673 19 1 0.0750 0.6204 -7.0037 20 6 1.4374 -0.0208 -8.5786 21 6 1.6653 1.2406 -9.4450 22 6 1.5057 2.4000 -8.4508 23 6 0.2154 3.2075 -8.5850 24 6 1.0622 4.4515 -8.2599 25 6 2.2775 3.6728 -8.7957 26 8 1.7606 1.8502 -7.1506 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1249 1.4442 0.1051 31 1 1.7651 1.9251 -0.9379 32 1 1.5934 1.9858 0.8327 33 1 0.7161 1.1605 3.4894 34 1 3.1300 -0.7218 -1.2490 35 1 1.6767 -1.7490 -1.2492 36 1 0.9938 0.7578 -2.3564 37 1 0.8702 0.9326 -4.6809 38 1 2.8669 -0.3460 -6.2152 39 1 1.4146 -1.3753 -6.2158 40 1 2.3321 -0.6432 -8.5672 41 1 0.5826 -0.5892 -8.9454 42 1 2.6687 1.2365 -9.8706 43 1 0.9160 1.3038 -10.2340 44 1 -0.1962 3.2100 -9.5942 45 1 -0.5284 2.9735 -7.8233 46 1 1.1212 4.6726 -7.1942 47 1 0.8040 5.3239 -8.8602 48 1 3.1815 3.8106 -8.2025 49 1 2.4460 3.8062 -9.8643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883740806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:35 Heat of formation + Delta-G solvation = -64.297455 kcal Electronic energy + Delta-G solvation = -26231.911495 eV Core-core repulsion = 22580.380901 eV Total energy + Delta-G solvation = -3651.530594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90141 -39.45648 -37.01831 -36.29158 -34.14376 -33.17300 -32.48967 -30.85110 -29.16662 -26.21746 -25.70362 -25.67320 -25.20423 -24.19132 -22.39723 -21.47941 -20.44980 -19.62964 -18.71709 -18.05052 -16.84353 -16.14849 -16.03231 -15.77091 -15.44056 -15.05890 -14.79216 -14.65137 -14.05829 -13.69904 -13.57540 -13.32480 -13.19912 -12.82181 -12.75270 -12.41930 -12.34308 -12.13184 -12.01129 -11.68758 -11.36226 -11.30504 -11.14845 -11.10393 -10.83187 -10.78610 -10.64025 -10.49050 -10.32986 -10.17530 -9.85475 -9.71903 -9.57181 -9.25797 -8.90999 -8.75556 -8.35411 -8.11130 -5.98931 -4.06966 3.10694 3.30770 3.36049 3.38273 3.43695 3.72900 4.09567 4.16326 4.31292 4.42601 4.46373 4.58541 4.63060 4.76782 4.85996 4.88948 5.09334 5.15689 5.28255 5.28750 5.39894 5.43680 5.51523 5.58524 5.61630 5.63400 5.72485 5.84194 5.92905 5.99299 6.27214 6.42594 6.56273 6.64345 6.73232 6.85639 6.88558 6.96596 7.08275 7.17036 7.37543 7.48430 7.60800 7.74636 8.04585 8.16721 8.42695 8.56232 8.92627 9.12248 9.57987 11.03201 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.002450 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.976122 B =11423.638346 C =12056.756987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.602 6.602 16 N -0.751 5.751 17 C 0.149 3.851 18 C 0.064 3.936 19 H 0.076 0.924 20 C -0.147 4.147 21 C -0.138 4.138 22 C 0.079 3.921 23 C -0.156 4.156 24 C -0.136 4.136 25 C -0.129 4.129 26 O -0.339 6.339 27 H 0.081 0.919 28 H 0.007 0.993 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.004 0.996 32 H 0.083 0.917 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.396 0.604 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 5.692 -24.994 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.482 6.482 16 N -0.407 5.407 17 C 0.024 3.976 18 C 0.006 3.994 19 H 0.094 0.906 20 C -0.185 4.185 21 C -0.175 4.175 22 C 0.039 3.961 23 C -0.194 4.194 24 C -0.174 4.174 25 C -0.166 4.166 26 O -0.258 6.258 27 H 0.100 0.900 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.023 0.977 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.229 0.771 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.415 4.962 -24.730 25.338 hybrid contribution -0.421 0.140 0.787 0.903 sum -2.836 5.101 -23.943 24.644 Atomic orbital electron populations 1.21793 0.97894 0.99121 0.99886 1.18360 0.92665 0.92851 0.90606 1.21838 0.99389 0.98440 0.98886 1.20988 1.29866 1.13692 0.89898 0.92399 1.24878 0.95017 0.94788 0.98779 1.69848 1.39087 1.20331 1.23124 0.86584 0.77980 0.80740 0.82742 1.20837 1.21240 1.19837 1.21556 0.97883 0.95364 0.82421 1.45495 1.55629 1.33026 1.04591 1.16051 0.80485 0.82973 0.80698 1.90874 1.43161 1.27966 1.86165 1.45009 1.57644 1.33441 1.04652 1.21168 1.00529 0.96122 0.79755 1.23319 0.97408 0.83547 0.95084 0.90624 1.22917 1.03289 0.98282 0.94018 1.22742 1.02960 0.93755 0.98087 1.22674 0.96534 0.93062 0.83839 1.23352 0.96917 0.96772 1.02332 1.22843 0.95959 0.96713 1.01863 1.22917 0.98522 0.93680 1.01514 1.89072 1.76374 1.29370 1.30949 0.90019 0.97399 0.95398 0.95266 0.97672 0.89819 0.93096 0.93007 0.92993 0.77199 0.77087 0.91041 0.90441 0.90031 0.90105 0.90345 0.90345 0.89344 0.90790 0.89658 0.91340 0.90332 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.05 37.16 0.30 -2.66 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.51 8.01 -34.44 -0.28 -13.79 16 5 H 0.06 1.56 7.75 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.12 -17.82 -0.09 1.69 16 7 N -0.89 -23.94 9.47 55.43 0.53 -23.42 16 8 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -13.84 4.91 -65.23 -0.32 -14.16 16 14 C 0.70 13.12 8.57 -86.92 -0.74 12.38 16 15 O -0.60 -13.62 16.34 5.29 0.09 -13.54 16 16 N -0.75 -10.66 5.55 -65.22 -0.36 -11.02 16 17 C 0.15 1.81 5.27 -4.04 -0.02 1.79 16 18 C 0.06 0.60 3.32 -25.93 -0.09 0.52 16 19 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 20 C -0.15 -1.06 6.65 -25.02 -0.17 -1.23 16 21 C -0.14 -0.92 6.48 -25.54 -0.17 -1.09 16 22 C 0.08 0.65 1.13 -90.54 -0.10 0.55 16 23 C -0.16 -1.11 7.57 -26.33 -0.20 -1.31 16 24 C -0.14 -1.00 8.09 -25.74 -0.21 -1.21 16 25 C -0.13 -0.96 7.61 -26.33 -0.20 -1.16 16 26 O -0.34 -3.72 11.12 -35.23 -0.39 -4.11 16 27 H 0.08 2.05 6.16 -51.93 -0.32 1.73 16 28 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.00 0.09 6.72 -51.93 -0.35 -0.26 16 32 H 0.08 2.12 6.20 -51.93 -0.32 1.80 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.39 6.70 6.17 -40.82 -0.25 6.45 16 37 H 0.40 4.80 8.49 -40.82 -0.35 4.46 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.08 0.41 7.85 -51.93 -0.41 0.00 16 44 H 0.09 0.49 7.97 -51.93 -0.41 0.08 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -30.57 381.52 -10.13 -40.69 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.63 Total: 7.44 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.76 Total: -3.61 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.16 Total: -48.60 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.31 Total: -17.65 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.57 -10.13 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.604 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds